Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g1453 | ATGGACGGCGGAGGAGAAGCTACCAGAAAAAGAGGGCTAGACAATCAGAGGCTTTACAAAGGGATAAGGATGAGGAAGTGGGGAAAGTGGGTGGCTGAGATTCGAGAGCCCAATAAGCGCTCTAGGATTTGGCTCGGCTCTTACTCTTCTCCAGTCGCCGCCGCCAGGGCCTACGATACCGCCGTTTTTTACCTCAGAGGTCCTTCCGCCAGGCTTAATTTTCCCGAGTTGTTAGCAGGGGAAGGCCGTGGAATTAGCGCCGGCGCCGGCGACATGTCGGCGGCTACTATACGGAAGAAAGCCACGGAGGTGGGTGCAAGAGTGGATGCTCTGGAGAGTTCTTTAGGGCAACACAGTCACCACAACCGGAACCATCATTCCCACGCATCGGCGTCTCCGCCAGAGACAAAAGGCTGCAGCGGGTTTTTGGATCGGGTGGATTTGAACAAATTACCCGACCCGGAAGAAGAAGATGAAGAAGGGGATGGAGAATTCGAGTGGGAGAGAGTCGAGAGACACTGA | 522 | 54.79 | MDGGGEATRKRGLDNQRLYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDTAVFYLRGPSARLNFPELLAGEGRGISAGAGDMSAATIRKKATEVGARVDALESSLGQHSHHNRNHHSHASASPPETKGCSGFLDRVDLNKLPDPEEEDEEGDGEFEWERVERH | 173 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 29969044 | 29969565 | - | CcPI632755_04g014530.1 | Cco04g1453 | 176678 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g1453 | 173 | CDD | AP2 | 19 | 77 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco04g1453 | 173 | ProSiteProfiles | AP2/ERF domain profile. | 18 | 75 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco04g1453 | 173 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED | 12 | 160 | - | - | |
Cco04g1453 | 173 | FunFam | Ethylene-responsive transcription factor 2 | 17 | 76 | - | - | |
Cco04g1453 | 173 | MobiDBLite | consensus disorder prediction | 114 | 173 | - | - | |
Cco04g1453 | 173 | Gene3D | AP2/ERF domain | 18 | 76 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco04g1453 | 173 | SMART | rav1_2 | 18 | 81 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco04g1453 | 173 | Pfam | AP2 domain | 19 | 67 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco04g1453 | 173 | SUPERFAMILY | DNA-binding domain | 18 | 76 | IPR016177 | GO:0003677(InterPro) | |
Cco04g1453 | 173 | PRINTS | Ethylene responsive element binding protein signature | 57 | 77 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco04g1453 | 173 | PRINTS | Ethylene responsive element binding protein signature | 19 | 30 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g1453 | Cco-Chr4:29969044 | Cco08g0160 | Cco-Chr8:2582201 | 2.90E-20 | dispersed | |
Cco02g1323 | Cco-Chr2:25032317 | Cco04g1453 | Cco-Chr4:29969044 | 2.40E-42 | wgd | |
Cco04g1453 | Cco-Chr4:29969044 | Cco05g2274 | Cco-Chr5:31455193 | 4.80E-39 | wgd | |
Cco04g1453 | Cco-Chr4:29969044 | Cco08g1797 | Cco-Chr8:29091200 | 2.10E-34 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59075 | PF00847 | AP2 | 2.30E-11 | CL0081 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g1453 | K09286 | - | csv:101214481 | 292.737 |