Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1455 ATGAACCCTAACCACCCCACATTTCTCTCTTCCCTTCCACTTTTCTGTTCTGTTGTACTGTTTTCTCTCTCCGCTTCTGCCGCCTCTGGATTGGCCTTTCAAATTTCGCCGGAAGACTTACTGCTGCCCTCCGACGCCGTTTCTCTTCTTTCCTTCAAGTCCAAAGCCGATTTGAACAACAAGCTTCTTTACACTCTCAATGAGCGCTTTGATTACTGTCAATGGCAGGGCGTGAAGTGTGTACAGGGTCGTGTTGTTCGACTGGTTCTTCAGTCGTTCGGTCTCCGAGGGACATTGGCTCCAAATACAGTGTCTCAGCTCGACCAGCTTCGGATCCTCAGCCTGCATAATAACTCCCTCGAAGGACCCATCCCTGACCTATCTAGACTCTTCAATCTTAAATCTCTGTTCCTTGGCCGAAACTCCTTCGTTGGGTCTTTTCCGCCGTCGATTCTCACTCTTCACCGGCTTCAGACTCTTGATCTTTCCTATAACAACTTTACTGGTCCGCTCCCGACGAGGCTTTCCTCGTTGGACCGACTCATTACTCTTAGGCTTGAATGGAATGGTTTCAATGGAAGTATTCCTCCCTTAAATCAGTCATTCCTTGAGGTCTTCAATGTCACGGGGAACAACCTGACCGGCCAAATTCCAGTTACCCCCACTCTGTCACGTTTTAACACGTCGTCGTTTTTCTGGAACCCAAATCTCTGTGGCGAGATCGTTAACAAGGCATGTCATTCACCCACTCCATTCTTTGAAGCTTCCAATGCCACTCCGCCATCTATCCCTTCCGTCCAAAGTGCACAATCACAGGACGTACTTCTCTCTCCTGTTACTCATGTTAAGCACAAGGAAACCGGTATGATTTTGGGGCTTTCAGTCGGCACTGTCGTTTTAATAGTCGGTGTTTTATGTTTCTATGTAGCTACCAGAACCCAGAGAAGTCAAACTGCGTCGAAGCCGGCAATGCCGCAATTCGAAACCGACACTACTTTTTCCACAGCTTCCGCAATTAACAACCGAGTCGAGGGGAAAGGCGAATTTCAAGCCAAAATGAAAGAAAGTGAAGAAATGCCAAAAGCCCAGAAGAGTGGTAATCTTATATTTTGTGAAGGGGAAGCAGAATTATTCAACTTAGAGCAGTTAATGAAGGCTTCGGCCGAATTGCTCGGTAGAGGCACAATGGGAACTACATACAAAGCAGTGCTCTGCAACCAGCTCATCATAACGGTGAAGCGTCTTGATGCTAATAAGACTGCCGCGACGAGCAGCGAAGTGTTCGACCGACATTTGGGAGCACTGGGTGCGCTTCATCACCCTAATTTGGTACCAGTTAGGGCATACTTCCAATCGAAGGGAGAGAGATTAGTGGTGTACGATTACCAACCTAACGGCAGTCTTTACAACCTCATTCACGGTTCAAGATCAGCGAGGGCTAAGCCTTTGCATTGGACGTCATGCTTGAAGATTGCAGAAGATTTAGCTCAGGGCATTGCCTATATACATCAAGCCTCGAATTTAATCCATGGCAACTTAAAGTCTTCTAATGTTCTCCTTGGTGCAGAGTTTGAGGCTTGTCTCACAGACTATGGGCTTTCTGCTCTGGCAGAGGCCTATGAAGATCCAGATTGTTCACGATACCAAGCCCCTGAAACTCGCAAGTCGAGCCGGAACGCAACCCAGAAGAGCGATGTCTATGCCTTCGGCGTCCTTTTGCTGGAACTTTTGACAGGAAGACATCCTGCACACCATCCATTTCTTGAGCCAACTGACATGCCAGAATGGGTGAGAGTAGTTAGGGAAGATGATGGTGGGGATAGTAACCAACTTGGAATGCTTACTGAGGTGGCTAGCATCTGCAGTACTACATCCCCTGAACAGAGGCCGGCCATGTGGCAAGTTTTGAAAATGATACTGGAGATTAAAGAGAGTGTCATGACAGAGGACAGTGAATCTAGTGGCTTTTAA 1971 47.54 MNPNHPTFLSSLPLFCSVVLFSLSASAASGLAFQISPEDLLLPSDAVSLLSFKSKADLNNKLLYTLNERFDYCQWQGVKCVQGRVVRLVLQSFGLRGTLAPNTVSQLDQLRILSLHNNSLEGPIPDLSRLFNLKSLFLGRNSFVGSFPPSILTLHRLQTLDLSYNNFTGPLPTRLSSLDRLITLRLEWNGFNGSIPPLNQSFLEVFNVTGNNLTGQIPVTPTLSRFNTSSFFWNPNLCGEIVNKACHSPTPFFEASNATPPSIPSVQSAQSQDVLLSPVTHVKHKETGMILGLSVGTVVLIVGVLCFYVATRTQRSQTASKPAMPQFETDTTFSTASAINNRVEGKGEFQAKMKESEEMPKAQKSGNLIFCEGEAELFNLEQLMKASAELLGRGTMGTTYKAVLCNQLIITVKRLDANKTAATSSEVFDRHLGALGALHHPNLVPVRAYFQSKGERLVVYDYQPNGSLYNLIHGSRSARAKPLHWTSCLKIAEDLAQGIAYIHQASNLIHGNLKSSNVLLGAEFEACLTDYGLSALAEAYEDPDCSRYQAPETRKSSRNATQKSDVYAFGVLLLELLTGRHPAHHPFLEPTDMPEWVRVVREDDGGDSNQLGMLTEVASICSTTSPEQRPAMWQVLKMILEIKESVMTEDSESSGF 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29990859 29993830 - CcPI632755_04g014550.1 Cco04g1455 176680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1455 656 SUPERFAMILY Protein kinase-like (PK-like) 389 643 IPR011009 -
Cco04g1455 656 ProSiteProfiles Leucine-rich repeat profile. 109 131 IPR001611 GO:0005515(InterPro)
Cco04g1455 656 Gene3D Transferase(Phosphotransferase) domain 1 464 654 - -
Cco04g1455 656 Gene3D Ribonuclease Inhibitor 43 199 IPR032675 -
Cco04g1455 656 SUPERFAMILY L domain-like 47 239 - -
Cco04g1455 656 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 44 648 IPR046959 -
Cco04g1455 656 FunFam Leucine-rich repeat receptor-like protein kinase 156 248 - -
Cco04g1455 656 Pfam Leucine Rich Repeat 109 126 IPR001611 GO:0005515(InterPro)
Cco04g1455 656 Pfam Leucine Rich Repeat 156 178 IPR001611 GO:0005515(InterPro)
Cco04g1455 656 ProSiteProfiles Protein kinase domain profile. 385 647 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g1455 656 Pfam Protein tyrosine and serine/threonine kinase 389 637 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g1455 656 Gene3D Ribonuclease Inhibitor 200 249 IPR032675 -
Cco04g1455 656 Gene3D Phosphorylase Kinase; domain 1 349 462 - -
Cco04g1455 656 FunFam Probable inactive receptor kinase At5g67200 44 154 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1455 Cco-Chr4:29990859 Cco10g1936 Cco-Chr10:32933408 1.40E-70 dispersed
Cco07g0770 Cco-Chr7:16370208 Cco04g1455 Cco-Chr4:29990859 1.10E-107 transposed
Cco02g2029 Cco-Chr2:33256133 Cco04g1455 Cco-Chr4:29990859 3.40E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86760 PF07714 PK_Tyr_Ser-Thr 3.20E-30 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1455 - - - 0.0