Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g1457 | ATGGCTGTGGAGATCAAGTCCCACCCTTACCCACTCCTCACTATGGAAGCCAACGCCGTCCAAGAAGCCGCTTCCGGCCTCGAAAGCGTCGAGAAGCTCATCCGATTACTTTCTAATGCAAATGCCCCTCAACCTCACTCCTTACCCTCCTCCACTCAATCCCCCATCGATTTCCCCACCGACTGCCGCGCCGCTGCCGATGTAGCCGTTTCCAAGTTCAAAAAGGTTATTTCTCTCCTTGGCCGTAGCCGCCTCGGCCACGCTCGTTTCAGGAGAGCTCCTCTGCCTCAACAACCTCACTACGCTACTCCCATACAGCAGATCCCACCCCATCCCCACCTTGATAACAACCACAACAATAACAACGACTCTGTTAATTTCTCCGCCCATAATTCCTTCATTTCCTCGTTGACCGGCGACGCCGACACCAAGCATCCTTCTTCCTCTTCCTCACCTTTTCTCATTACCAACCTCTCCCAAGTCTCCTCCATTGGGAAACCACCTCTTTCTACTTCTTCCCTTAAGAGGAAGTGCAGCTCAGATAACTTGAGATCCGGCAAGTGCGCTGCTGCTTCTTCCTCTGCCCGATGTCACTGTTCCAAGAAGAGAAAACTGAGGGTGAAGAGGGTGGTGAGAGTTCCGGCGATAAGCTTGAAAATGGCGGATATCCCACCGGACGATTATTCATGGCGGAAATATGGTCAAAAGCCCATTAAAGGCTCTCCACATCCCAGGGGTTATTACAAGTGTAGCAGTGTGAGAGGTTGCCCAGCCCGAAAACACGTAGAACGGGCCGTAGACGATCCGACGATGCTAGTGGTGACTTACGAAGGAGAGCACAATCACACACTCTCTGTGCCCGAAACCTCCAGTCTCATCCTCGAGTCTTCTTAG | 894 | 52.35 | MAVEIKSHPYPLLTMEANAVQEAASGLESVEKLIRLLSNANAPQPHSLPSSTQSPIDFPTDCRAAADVAVSKFKKVISLLGRSRLGHARFRRAPLPQQPHYATPIQQIPPHPHLDNNHNNNNDSVNFSAHNSFISSLTGDADTKHPSSSSSPFLITNLSQVSSIGKPPLSTSSLKRKCSSDNLRSGKCAAASSSARCHCSKKRKLRVKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERAVDDPTMLVVTYEGEHNHTLSVPETSSLILESS | 297 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 30010269 | 30011380 | - | CcPI632755_04g014570.1 | Cco04g1457 | 176682 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g1457 | 297 | ProSiteProfiles | WRKY domain profile. | 219 | 285 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco04g1457 | 297 | Pfam | Plant zinc cluster domain | 175 | 222 | IPR018872 | - | |
Cco04g1457 | 297 | SUPERFAMILY | WRKY DNA-binding domain | 221 | 283 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco04g1457 | 297 | Gene3D | WRKY domain | 210 | 285 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco04g1457 | 297 | FunFam | WRKY transcription factor 65 | 208 | 285 | - | - | |
Cco04g1457 | 297 | Pfam | WRKY DNA -binding domain | 226 | 282 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco04g1457 | 297 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 19 | 285 | IPR044810 | GO:0003700(InterPro) | |
Cco04g1457 | 297 | SMART | WRKY_cls | 224 | 284 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g0860 | Cco-Chr2:10025138 | Cco04g1457 | Cco-Chr4:30010269 | 4.80E-84 | dispersed | |
Cco04g1457 | Cco-Chr4:30010269 | Cco05g2915 | Cco-Chr5:36685428 | 1.70E-52 | dispersed | |
Cco04g1457 | Cco-Chr4:30010269 | Cco05g2281 | Cco-Chr5:31505655 | 5.70E-72 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59076 | PF03106 | WRKY | 3.80E-26 | CL0274 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g1457 | - | - | - | 0.0 |