Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1457 ATGGCTGTGGAGATCAAGTCCCACCCTTACCCACTCCTCACTATGGAAGCCAACGCCGTCCAAGAAGCCGCTTCCGGCCTCGAAAGCGTCGAGAAGCTCATCCGATTACTTTCTAATGCAAATGCCCCTCAACCTCACTCCTTACCCTCCTCCACTCAATCCCCCATCGATTTCCCCACCGACTGCCGCGCCGCTGCCGATGTAGCCGTTTCCAAGTTCAAAAAGGTTATTTCTCTCCTTGGCCGTAGCCGCCTCGGCCACGCTCGTTTCAGGAGAGCTCCTCTGCCTCAACAACCTCACTACGCTACTCCCATACAGCAGATCCCACCCCATCCCCACCTTGATAACAACCACAACAATAACAACGACTCTGTTAATTTCTCCGCCCATAATTCCTTCATTTCCTCGTTGACCGGCGACGCCGACACCAAGCATCCTTCTTCCTCTTCCTCACCTTTTCTCATTACCAACCTCTCCCAAGTCTCCTCCATTGGGAAACCACCTCTTTCTACTTCTTCCCTTAAGAGGAAGTGCAGCTCAGATAACTTGAGATCCGGCAAGTGCGCTGCTGCTTCTTCCTCTGCCCGATGTCACTGTTCCAAGAAGAGAAAACTGAGGGTGAAGAGGGTGGTGAGAGTTCCGGCGATAAGCTTGAAAATGGCGGATATCCCACCGGACGATTATTCATGGCGGAAATATGGTCAAAAGCCCATTAAAGGCTCTCCACATCCCAGGGGTTATTACAAGTGTAGCAGTGTGAGAGGTTGCCCAGCCCGAAAACACGTAGAACGGGCCGTAGACGATCCGACGATGCTAGTGGTGACTTACGAAGGAGAGCACAATCACACACTCTCTGTGCCCGAAACCTCCAGTCTCATCCTCGAGTCTTCTTAG 894 52.35 MAVEIKSHPYPLLTMEANAVQEAASGLESVEKLIRLLSNANAPQPHSLPSSTQSPIDFPTDCRAAADVAVSKFKKVISLLGRSRLGHARFRRAPLPQQPHYATPIQQIPPHPHLDNNHNNNNDSVNFSAHNSFISSLTGDADTKHPSSSSSPFLITNLSQVSSIGKPPLSTSSLKRKCSSDNLRSGKCAAASSSARCHCSKKRKLRVKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERAVDDPTMLVVTYEGEHNHTLSVPETSSLILESS 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30010269 30011380 - CcPI632755_04g014570.1 Cco04g1457 176682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1457 297 ProSiteProfiles WRKY domain profile. 219 285 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco04g1457 297 Pfam Plant zinc cluster domain 175 222 IPR018872 -
Cco04g1457 297 SUPERFAMILY WRKY DNA-binding domain 221 283 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco04g1457 297 Gene3D WRKY domain 210 285 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco04g1457 297 FunFam WRKY transcription factor 65 208 285 - -
Cco04g1457 297 Pfam WRKY DNA -binding domain 226 282 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco04g1457 297 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 19 285 IPR044810 GO:0003700(InterPro)
Cco04g1457 297 SMART WRKY_cls 224 284 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0860 Cco-Chr2:10025138 Cco04g1457 Cco-Chr4:30010269 4.80E-84 dispersed
Cco04g1457 Cco-Chr4:30010269 Cco05g2915 Cco-Chr5:36685428 1.70E-52 dispersed
Cco04g1457 Cco-Chr4:30010269 Cco05g2281 Cco-Chr5:31505655 5.70E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59076 PF03106 WRKY 3.80E-26 CL0274 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1457 - - - 0.0