Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g1461 | ATGAGATCGAGCCCAAGTTTTCTATTCGTCGCTGTAAGTTGGCCTGCATTTTCATTTCAAACTCCGCATTTGCGTTCCCGAATCTTACAAGCATGTGTGATTAATTTAAGTGACAGATTGGATATAGAGATTAACTACGGAAGCTCCAACTTCATTGTGGATATCTCTACTGTCACCAATTCAGCTCCAATAGTTGATAGCCAAAGTAGTAAAGGAGATAATTTGACATCTATTTTATCTTCGTCTGGAATATCATCTTGGGCTAAGAGTTTCAGAAATCCACAACCACCTGAAGCAGCAGAAAATGACTCCAAAGCAGGAAATTCTGGGATGTCAGCAATTGCTCGTTTCAGTAGTGGTTTTGGACTCCGGATACCTGCGATGTCTCCTGTACAAAGTGATGGTGCTGCAGATACCAAACCAGCAATGCAATCTGGTGTTTTTGAATCACTCACAAAAGGTTTAGTTGACACATCTCAGAATGCAGTAAAGGCTATGCAGGTAAAAGCACGTCATATTGTCTCTCAGAACAAGCGAAGATATCAGGAAGGAGAATTTGATTTGGATATGACATATATCACCGAAAACATAATTGCTATGGGGTTTCCTGCTGGTCACATGAGCTCTGGTTTTTTCGGATTCCTTGAGGGATTTTACAGAAACCATATGGAGGAAGTGATCAAATTTTTTGAAACTCATCATAAGGGAAAATACAAAGTTTACAATCTTTGCTCAGAGCGTTTGTATGATGCCGCATTATTTGAGGGGAAGGTTGCACATTTCCCGTTTGATGATCATAATTGTCCTCCTATCCATCTCACAAAATCATTTTGTCAAAGTGCATATGCATGGTTAAAGGAGGATATTGAGAATGTGGTTGTTGTTCATTGTAAAGCTGGTATGGCAAGAACAGGGCTAATGATTTGCAGCCTCCTTTTATTCCTAAAGTTCTTCCAAACATCAGCAGAGGCGATTGACTATTATAATCAGAAAAGATGCGTGGATGGGAAGGCTTTGGTTCTTCCTAGCCAGATTAGGTATGTCAAGTATTTTGAGCGGATTTTAACACATTTCAACGGAAATACTCCACCAGGACGGAGGTGCATGCTGAGAGGTTTTCGGCTTCACAAGTGCCCGTATTGGGTTAGGCCTTCCATTACGATATCAAATCACAGTGAGATTTTGTTCTCAACAAGAAAGCATCCAAAGACAAAGGATTTAATGCCAGAAGATTTCTGGATTAGGGCACCAAAGAAAGGATTTGTAGTCTTTGCACTGCCAGGTGAGCCTGGTTTGACAGAGTTGTCTGGGGATTTCAAGATTCATTTTCATGACCGGCATGGAGACTTTTACTGTTGGTTAAATACAACAATGACAGAAAACAAAATATTAATAAGTGACACGGATCTTGATGGTTTCGATAAGAGAAAACTTCCAACCCCTGGATTTCAAGTCGAAGTTGTGATGATAGACTATGATGGTTCTTTGCCAACACGATTGAAAACTGATTCAACTAGTAAAGGATCTGATCGTCGCTCTATTCATGATCGAGCATCAGGTAATGAAGCAGCACAATCCAACACAAATAAAATTTCCGGAGGTGAAGAAAATGATGACGACGTATTCTCCGATAGTGATGAAGAAAATGGTGACATAAAAACCAGTCTAGCTCAATCAACTTCTGGAACTGGAAATGGAACTTCAAAAGCTGATCATTCAACAACAACAATTGCCTCCGGAAGAATTGGGAGTTTAGCGCATGACACTAGTTGTTTGACCCTCGGAAATGAGAAAAACTCACAACCTAATGCTCCGAAAGAACCTGCCGTAATACAACGATCAGCCCTTGAGATCCCAAATTTGGATTTAGTAAGAGCGAGTGATTTCAAGGCAATAGCCGCCGATGCGTCAGTCTTCACATTTGGGGATGAAGAAGACTTTGATAGTGAATGA | 1953 | 40.5 | MRSSPSFLFVAVSWPAFSFQTPHLRSRILQACVINLSDRLDIEINYGSSNFIVDISTVTNSAPIVDSQSSKGDNLTSILSSSGISSWAKSFRNPQPPEAAENDSKAGNSGMSAIARFSSGFGLRIPAMSPVQSDGAADTKPAMQSGVFESLTKGLVDTSQNAVKAMQVKARHIVSQNKRRYQEGEFDLDMTYITENIIAMGFPAGHMSSGFFGFLEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDAALFEGKVAHFPFDDHNCPPIHLTKSFCQSAYAWLKEDIENVVVVHCKAGMARTGLMICSLLLFLKFFQTSAEAIDYYNQKRCVDGKALVLPSQIRYVKYFERILTHFNGNTPPGRRCMLRGFRLHKCPYWVRPSITISNHSEILFSTRKHPKTKDLMPEDFWIRAPKKGFVVFALPGEPGLTELSGDFKIHFHDRHGDFYCWLNTTMTENKILISDTDLDGFDKRKLPTPGFQVEVVMIDYDGSLPTRLKTDSTSKGSDRRSIHDRASGNEAAQSNTNKISGGEENDDDVFSDSDEENGDIKTSLAQSTSGTGNGTSKADHSTTTIASGRIGSLAHDTSCLTLGNEKNSQPNAPKEPAVIQRSALEIPNLDLVRASDFKAIAADASVFTFGDEEDFDSE | 650 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 30047214 | 30052255 | + | CcPI632755_04g014610.1 | Cco04g1461 | 176686 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g1461 | 650 | MobiDBLite | consensus disorder prediction | 552 | 582 | - | - | |
Cco04g1461 | 650 | ProSiteProfiles | C2 tensin-type domain profile. | 365 | 492 | IPR014020 | - | |
Cco04g1461 | 650 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 192 | 359 | IPR029021 | - | |
Cco04g1461 | 650 | MobiDBLite | consensus disorder prediction | 499 | 582 | - | - | |
Cco04g1461 | 650 | ProSiteProfiles | Phosphatase tensin-type domain profile. | 179 | 358 | IPR029023 | - | |
Cco04g1461 | 650 | CDD | PTP_PTEN | 189 | 354 | IPR045101 | GO:0016791(InterPro) | |
Cco04g1461 | 650 | MobiDBLite | consensus disorder prediction | 504 | 518 | - | - | |
Cco04g1461 | 650 | Pfam | Polymorphic toxin system, DSP-PTPase phosphatase | 257 | 313 | - | - | |
Cco04g1461 | 650 | PANTHER | PHOSPHATASE WITH HOMOLOGY TO TENSIN | 166 | 569 | IPR051281 | GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER) | |
Cco04g1461 | 650 | Pfam | PTEN2, C2 domain | 365 | 493 | - | - | |
Cco04g1461 | 650 | Gene3D | Protein tyrosine phosphatase superfamily | 164 | 361 | IPR029021 | - | |
Cco04g1461 | 650 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 293 | 332 | IPR000387 | GO:0016311(InterPro) | |
Cco04g1461 | 650 | SMART | PTEN_C2_2 | 363 | 491 | IPR014020 | - | |
Cco04g1461 | 650 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 295 | 305 | IPR016130 | GO:0016311(InterPro) | |
Cco04g1461 | 650 | FunFam | Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 | 164 | 361 | - | - | |
Cco04g1461 | 650 | MobiDBLite | consensus disorder prediction | 88 | 107 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g0686 | Cco-Chr2:6863544 | Cco04g1461 | Cco-Chr4:30047214 | 2.80E-202 | dispersed | |
Cco04g1461 | Cco-Chr4:30047214 | Cco10g1533 | Cco-Chr10:28543351 | 1.60E-39 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g1461 | K01110 | - | csv:101213277 | 1081.24 |