Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1461 ATGAGATCGAGCCCAAGTTTTCTATTCGTCGCTGTAAGTTGGCCTGCATTTTCATTTCAAACTCCGCATTTGCGTTCCCGAATCTTACAAGCATGTGTGATTAATTTAAGTGACAGATTGGATATAGAGATTAACTACGGAAGCTCCAACTTCATTGTGGATATCTCTACTGTCACCAATTCAGCTCCAATAGTTGATAGCCAAAGTAGTAAAGGAGATAATTTGACATCTATTTTATCTTCGTCTGGAATATCATCTTGGGCTAAGAGTTTCAGAAATCCACAACCACCTGAAGCAGCAGAAAATGACTCCAAAGCAGGAAATTCTGGGATGTCAGCAATTGCTCGTTTCAGTAGTGGTTTTGGACTCCGGATACCTGCGATGTCTCCTGTACAAAGTGATGGTGCTGCAGATACCAAACCAGCAATGCAATCTGGTGTTTTTGAATCACTCACAAAAGGTTTAGTTGACACATCTCAGAATGCAGTAAAGGCTATGCAGGTAAAAGCACGTCATATTGTCTCTCAGAACAAGCGAAGATATCAGGAAGGAGAATTTGATTTGGATATGACATATATCACCGAAAACATAATTGCTATGGGGTTTCCTGCTGGTCACATGAGCTCTGGTTTTTTCGGATTCCTTGAGGGATTTTACAGAAACCATATGGAGGAAGTGATCAAATTTTTTGAAACTCATCATAAGGGAAAATACAAAGTTTACAATCTTTGCTCAGAGCGTTTGTATGATGCCGCATTATTTGAGGGGAAGGTTGCACATTTCCCGTTTGATGATCATAATTGTCCTCCTATCCATCTCACAAAATCATTTTGTCAAAGTGCATATGCATGGTTAAAGGAGGATATTGAGAATGTGGTTGTTGTTCATTGTAAAGCTGGTATGGCAAGAACAGGGCTAATGATTTGCAGCCTCCTTTTATTCCTAAAGTTCTTCCAAACATCAGCAGAGGCGATTGACTATTATAATCAGAAAAGATGCGTGGATGGGAAGGCTTTGGTTCTTCCTAGCCAGATTAGGTATGTCAAGTATTTTGAGCGGATTTTAACACATTTCAACGGAAATACTCCACCAGGACGGAGGTGCATGCTGAGAGGTTTTCGGCTTCACAAGTGCCCGTATTGGGTTAGGCCTTCCATTACGATATCAAATCACAGTGAGATTTTGTTCTCAACAAGAAAGCATCCAAAGACAAAGGATTTAATGCCAGAAGATTTCTGGATTAGGGCACCAAAGAAAGGATTTGTAGTCTTTGCACTGCCAGGTGAGCCTGGTTTGACAGAGTTGTCTGGGGATTTCAAGATTCATTTTCATGACCGGCATGGAGACTTTTACTGTTGGTTAAATACAACAATGACAGAAAACAAAATATTAATAAGTGACACGGATCTTGATGGTTTCGATAAGAGAAAACTTCCAACCCCTGGATTTCAAGTCGAAGTTGTGATGATAGACTATGATGGTTCTTTGCCAACACGATTGAAAACTGATTCAACTAGTAAAGGATCTGATCGTCGCTCTATTCATGATCGAGCATCAGGTAATGAAGCAGCACAATCCAACACAAATAAAATTTCCGGAGGTGAAGAAAATGATGACGACGTATTCTCCGATAGTGATGAAGAAAATGGTGACATAAAAACCAGTCTAGCTCAATCAACTTCTGGAACTGGAAATGGAACTTCAAAAGCTGATCATTCAACAACAACAATTGCCTCCGGAAGAATTGGGAGTTTAGCGCATGACACTAGTTGTTTGACCCTCGGAAATGAGAAAAACTCACAACCTAATGCTCCGAAAGAACCTGCCGTAATACAACGATCAGCCCTTGAGATCCCAAATTTGGATTTAGTAAGAGCGAGTGATTTCAAGGCAATAGCCGCCGATGCGTCAGTCTTCACATTTGGGGATGAAGAAGACTTTGATAGTGAATGA 1953 40.5 MRSSPSFLFVAVSWPAFSFQTPHLRSRILQACVINLSDRLDIEINYGSSNFIVDISTVTNSAPIVDSQSSKGDNLTSILSSSGISSWAKSFRNPQPPEAAENDSKAGNSGMSAIARFSSGFGLRIPAMSPVQSDGAADTKPAMQSGVFESLTKGLVDTSQNAVKAMQVKARHIVSQNKRRYQEGEFDLDMTYITENIIAMGFPAGHMSSGFFGFLEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDAALFEGKVAHFPFDDHNCPPIHLTKSFCQSAYAWLKEDIENVVVVHCKAGMARTGLMICSLLLFLKFFQTSAEAIDYYNQKRCVDGKALVLPSQIRYVKYFERILTHFNGNTPPGRRCMLRGFRLHKCPYWVRPSITISNHSEILFSTRKHPKTKDLMPEDFWIRAPKKGFVVFALPGEPGLTELSGDFKIHFHDRHGDFYCWLNTTMTENKILISDTDLDGFDKRKLPTPGFQVEVVMIDYDGSLPTRLKTDSTSKGSDRRSIHDRASGNEAAQSNTNKISGGEENDDDVFSDSDEENGDIKTSLAQSTSGTGNGTSKADHSTTTIASGRIGSLAHDTSCLTLGNEKNSQPNAPKEPAVIQRSALEIPNLDLVRASDFKAIAADASVFTFGDEEDFDSE 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30047214 30052255 + CcPI632755_04g014610.1 Cco04g1461 176686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1461 650 MobiDBLite consensus disorder prediction 552 582 - -
Cco04g1461 650 ProSiteProfiles C2 tensin-type domain profile. 365 492 IPR014020 -
Cco04g1461 650 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 192 359 IPR029021 -
Cco04g1461 650 MobiDBLite consensus disorder prediction 499 582 - -
Cco04g1461 650 ProSiteProfiles Phosphatase tensin-type domain profile. 179 358 IPR029023 -
Cco04g1461 650 CDD PTP_PTEN 189 354 IPR045101 GO:0016791(InterPro)
Cco04g1461 650 MobiDBLite consensus disorder prediction 504 518 - -
Cco04g1461 650 Pfam Polymorphic toxin system, DSP-PTPase phosphatase 257 313 - -
Cco04g1461 650 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 166 569 IPR051281 GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)
Cco04g1461 650 Pfam PTEN2, C2 domain 365 493 - -
Cco04g1461 650 Gene3D Protein tyrosine phosphatase superfamily 164 361 IPR029021 -
Cco04g1461 650 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 293 332 IPR000387 GO:0016311(InterPro)
Cco04g1461 650 SMART PTEN_C2_2 363 491 IPR014020 -
Cco04g1461 650 ProSitePatterns Tyrosine specific protein phosphatases active site. 295 305 IPR016130 GO:0016311(InterPro)
Cco04g1461 650 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 164 361 - -
Cco04g1461 650 MobiDBLite consensus disorder prediction 88 107 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0686 Cco-Chr2:6863544 Cco04g1461 Cco-Chr4:30047214 2.80E-202 dispersed
Cco04g1461 Cco-Chr4:30047214 Cco10g1533 Cco-Chr10:28543351 1.60E-39 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1461 K01110 - csv:101213277 1081.24