Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco04g1470 | ATGGAAAATTACTCTTTGCTTTGCCTTTTTCTCTCTCTTATCTCTCTCCTCTTCGCTTTCAATCTCCGCCGTCGCAGAAACTTACCGCCCAGTCCGCTGTCTCTTCCCATCATCGGCCACCTCCATTACCTCAAAATCCCCGTCCACCGAACTTTCCAGAACCTCTCTGCAAAATACGGACCAGTAATCTCTCTTTGGTTCGGATCTCGCCTCGTCGTCGTCATCTCGTCATTGGACGTGATGGAGGAGTGCTTCACTAAGAACGATATCGTTTTAGCCAACCGTCCTCGGTTGCTAGTCGGCAAATACATCGGCTACAACCACACTACGATGGTAGCGTCACCGTACGGCGAACACTGGCGGAACCTCCGCCGAATTGGAGCCATCGAGATCTTTTCGGCATCTCGCCTCAATAAATTAGCTGGAATCCGAAAGGACGAAGTGGAACGGTTACTGAGGAAGCTATCGAGGAATTCGTTGTATGAATTCTCGAAGGTACATATGCAATCGGTGATTTCGGAACTGACGTTTAACATATCGATGAGAATGGCGGCCGGAAAGAGGTATTTCGGTGAGGAAGTGACGGATGAAGAGGAAGCGAGACAGTTCAGAGATTTGATTAAACAGGTGGTGGCGTTGGGAGGAGTTTCGAATCCAGGAGATTTCATTCCGATGATAAATTGGATTCCGAACGGGTTCAAGAGGAAGGTTTCGGGACTTGCAAAGAGGACGGACGCGTTTTTGCAGGGATTGATCGAGGAACATCGGAGCAAGAAGGAAGAAGGAAGGAACACGATGATCGATCATTTGCTCTCTCTGCAAGAATCAGAGCCGGAGAACTATGGAGATCAAATTATCAAAGGAATTATTCTGGTTTTGTTACTAGCAGGAACGGACACATCAGCTGTGACAATTGAATGGGCTCTAGCTCACTTACTCAACAATCCAGAGGTACTCAAAAAGGCTAGAGAAGAGCTAGACGCTCAAATCGGAGAAGATCGACTAGTGGAAGAATCAGACGTCCCCAAGTTACCATATCTTCAAGGAATCATCTCTGAGACTCTTCGGCTGAACCCAGCTGCTCCGATGCTAGTGCCACATCTCACCTCCGACGATTGCACAATCAGCGGCTACGACATACCACGTGACACAATTGTATTGGTTAATGCGTGGGCCATCCACAGAGATCCTAATCTATGGGAAGAACCCACACTATTCAAACCAGAAAGACACCAAAAGTCATCAGAACTAGGTGAACATCAGGTCCACAAGTTGGTTCCATTTGGAGTTGGACGACGAGCTTGCCCTGGGTCCGGCATGGCTCAACGAGTGGTGGGGTTGGCTCTGGCGGCCCTGATTCAGTGCTACGAATGGCAGAGGATTGGTGAAGAAAAAATAGACATGACGGAGGGACGAGGCGTCACTATGCCCAAGGCAGTGCCATTGGAAGCCATGTGCAAACCTCGTCGTATCATCCACAACCTTTTTAACTGA | 1494 | 48.59 | MENYSLLCLFLSLISLLFAFNLRRRRNLPPSPLSLPIIGHLHYLKIPVHRTFQNLSAKYGPVISLWFGSRLVVVISSLDVMEECFTKNDIVLANRPRLLVGKYIGYNHTTMVASPYGEHWRNLRRIGAIEIFSASRLNKLAGIRKDEVERLLRKLSRNSLYEFSKVHMQSVISELTFNISMRMAAGKRYFGEEVTDEEEARQFRDLIKQVVALGGVSNPGDFIPMINWIPNGFKRKVSGLAKRTDAFLQGLIEEHRSKKEEGRNTMIDHLLSLQESEPENYGDQIIKGIILVLLLAGTDTSAVTIEWALAHLLNNPEVLKKAREELDAQIGEDRLVEESDVPKLPYLQGIISETLRLNPAAPMLVPHLTSDDCTISGYDIPRDTIVLVNAWAIHRDPNLWEEPTLFKPERHQKSSELGEHQVHKLVPFGVGRRACPGSGMAQRVVGLALAALIQCYEWQRIGEEKIDMTEGRGVTMPKAVPLEAMCKPRRIIHNLFN | 497 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 30145027 | 30147857 | - | CcPI632755_04g014700.1 | Cco04g1470 | 176695 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco04g1470 | 497 | PRINTS | P450 superfamily signature | 426 | 435 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1470 | 497 | PRINTS | P450 superfamily signature | 296 | 313 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1470 | 497 | PRINTS | P450 superfamily signature | 435 | 446 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1470 | 497 | PRINTS | P450 superfamily signature | 349 | 360 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1470 | 497 | PRINTS | E-class P450 group I signature | 425 | 435 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1470 | 497 | PRINTS | E-class P450 group I signature | 435 | 458 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1470 | 497 | PRINTS | E-class P450 group I signature | 305 | 331 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1470 | 497 | PRINTS | E-class P450 group I signature | 56 | 75 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1470 | 497 | PRINTS | E-class P450 group I signature | 175 | 193 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1470 | 497 | PRINTS | E-class P450 group I signature | 80 | 101 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1470 | 497 | PRINTS | E-class P450 group I signature | 348 | 366 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1470 | 497 | PRINTS | E-class P450 group I signature | 285 | 302 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1470 | 497 | PRINTS | E-class P450 group I signature | 389 | 413 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1470 | 497 | FunFam | Cytochrome P450 family protein | 20 | 492 | - | - | |
| Cco04g1470 | 497 | CDD | CYP81 | 60 | 482 | - | - | |
| Cco04g1470 | 497 | SUPERFAMILY | Cytochrome P450 | 29 | 489 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1470 | 497 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 428 | 437 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cco04g1470 | 497 | Gene3D | Cytochrome P450 | 19 | 491 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1470 | 497 | Pfam | Cytochrome P450 | 29 | 478 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1470 | 497 | PANTHER | CYTOCHROME P450 82C3-RELATED | 14 | 489 | IPR050651 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco02g0878 | Cco-Chr2:10491878 | Cco04g1470 | Cco-Chr4:30145027 | 4.90E-139 | dispersed | |
| Cco02g0890 | Cco-Chr2:10719186 | Cco04g1470 | Cco-Chr4:30145027 | 3.70E-164 | dispersed | |
| Cco02g0892 | Cco-Chr2:10742102 | Cco04g1470 | Cco-Chr4:30145027 | 5.40E-149 | dispersed | |
| Cco04g1470 | Cco-Chr4:30145027 | Cco06g0155 | Cco-Chr6:1584689 | 3.30E-165 | dispersed | |
| Cco11g0907 | Cco-Chr11:12415077 | Cco04g1470 | Cco-Chr4:30145027 | 1.50E-14 | dispersed | |
| Cco04g1470 | Cco-Chr4:30145027 | Cco04g1472 | Cco-Chr4:30157823 | 3.90E-211 | proximal | |
| Cco02g2032 | Cco-Chr2:33302515 | Cco04g1470 | Cco-Chr4:30145027 | 4.50E-61 | wgd | |
| Cco04g1470 | Cco-Chr4:30145027 | Cco05g2296 | Cco-Chr5:31624290 | 1.60E-140 | wgd | |
| Cco04g1470 | Cco-Chr4:30145027 | Cco08g1815 | Cco-Chr8:29216257 | 6.20E-132 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco04g1470 | K13260 | - | csv:101211829 | 832.402 |