Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco04g1472 | ATGGATTTAGACACTTACTTCCTTTACTCTTCCCTCTCTCTTTTCTTTCTTCTTCTTGCTTTCAATCTCATTCGTCGATCACTTCGAGTTCGCAATAACTTACCGCCGAGTCCGCCTTCTCTTCCGATCATCGGTCATCTCCATCTCTTGAAAAAGCCACTACACCGAAATTTCCAGAACCTCTCTGCCAAATATGGCCCTGTTATGTCTCTCCGCCTCGGATCTAAGCTCGCAGTCGTTATATCCTCGTCGGCGGCGGTGGAGGAGTGCTTCACTAAAAACGACGTTGTTCTCGCCAACCGTCCGCGTTTGCTCATTGGAAAATACATCGGCTATAACTACACTACCATGATTGCGGCTCCGTACGGCGACCACTGGCGGAACCTTCGTCGAATAGGCGCCATTGAAATCTTCTCTTTATCTCGAATCAACGAATTCGCCGATATCCGGAGGGATGAAGTGAATCGATTGGTGCGAAAACTATCGCATAATTCGATTCATCAGTTCTCGAAAGTAGAAATTCAAACGGCGATGTCGGAGCTGACGTTCAACATCTCAATGAGAATGGCGGCCGGGAAGAGGTATTACGGCGAGGACGTGACGAACGAAGAAGAGGCGAGGAGATTCAGGGAGTTAATTAAAGAGATTGTGGCGATAGCAGGAGTATCAAATCCAGGGGATTTCTTACCCATATTGAACTGGATCTCGAATGGTTTTGAAAGGAAATTAATTCAATTGGGGAAGAAAGTGGATGCGTTCTTGCAGGGGCTAATTGATGAACACCGAAGGAAGAAGGAAGAAGGAAGGAACACGATGATCGATCACTTGCTTTCTCTACAAGAATCGGAACCCGATCACTATAACGATCAAATAATCAAGGGATTTACAATGGTATTACTGACTGCGGGGTCCGACACATCAGCTGTGACAATGGAATGGGCCTTGTCTCATCTACTAAACAATCCCCAAGTGTTAAGGAAGGCAAAAGACGAAGTAGACACTCAAATTGGAGGAGAACGACTCATGGAAGAACCAGACATTTTCAAACTACCTTATCTTCAGAAAATCATCTCTGAGACTCTTCGGCTGAATCCCGCGGCACCCATGTTGGTTCCCCATTATGCAGCCAATGACTGCACAATATGTGGATACGATGTGCCACGCGGTACGATGGTACTAGTCAATGCCTGGGCCATACATAGGGATTCAAATGAATGGGAGGATCCCATAAGTTTCAAACCAGAGCGATACCAAAAGTCAGAAGCCGTGGAGGTATACAAGTTGTTGCCTTTTGGAGTAGGGAGACGAGCTTGTCCTGGGTCTGCCATGGCGCACAGAGTGATGGGTCTAACTTTGGCAACTCTGATTCAATGCTTTGAGTGGGAGAAGATTGGAGAAGAAGACATCGATATGAGTGAGCGGAGTGGTGCCACAATGACCAAGATGGTGCCACTGGAGGCCATGTGCAAAGCTCGTCCCATCATCAACAACCTTCTTCACTAA | 1503 | 46.77 | MDLDTYFLYSSLSLFFLLLAFNLIRRSLRVRNNLPPSPPSLPIIGHLHLLKKPLHRNFQNLSAKYGPVMSLRLGSKLAVVISSSAAVEECFTKNDVVLANRPRLLIGKYIGYNYTTMIAAPYGDHWRNLRRIGAIEIFSLSRINEFADIRRDEVNRLVRKLSHNSIHQFSKVEIQTAMSELTFNISMRMAAGKRYYGEDVTNEEEARRFRELIKEIVAIAGVSNPGDFLPILNWISNGFERKLIQLGKKVDAFLQGLIDEHRRKKEEGRNTMIDHLLSLQESEPDHYNDQIIKGFTMVLLTAGSDTSAVTMEWALSHLLNNPQVLRKAKDEVDTQIGGERLMEEPDIFKLPYLQKIISETLRLNPAAPMLVPHYAANDCTICGYDVPRGTMVLVNAWAIHRDSNEWEDPISFKPERYQKSEAVEVYKLLPFGVGRRACPGSAMAHRVMGLTLATLIQCFEWEKIGEEDIDMSERSGATMTKMVPLEAMCKARPIINNLLH | 500 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 30157823 | 30160535 | - | CcPI632755_04g014720.1 | Cco04g1472 | 176697 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco04g1472 | 500 | CDD | CYP81 | 66 | 485 | - | - | |
| Cco04g1472 | 500 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 431 | 440 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cco04g1472 | 500 | Pfam | Cytochrome P450 | 35 | 477 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1472 | 500 | PRINTS | E-class P450 group I signature | 428 | 438 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1472 | 500 | PRINTS | E-class P450 group I signature | 395 | 419 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1472 | 500 | PRINTS | E-class P450 group I signature | 438 | 461 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1472 | 500 | PRINTS | E-class P450 group I signature | 311 | 337 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1472 | 500 | PRINTS | E-class P450 group I signature | 181 | 199 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1472 | 500 | PRINTS | E-class P450 group I signature | 291 | 308 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1472 | 500 | PRINTS | E-class P450 group I signature | 62 | 81 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1472 | 500 | PRINTS | E-class P450 group I signature | 86 | 107 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1472 | 500 | PRINTS | E-class P450 group I signature | 354 | 372 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1472 | 500 | PANTHER | CYTOCHROME P450 82C3-RELATED | 16 | 492 | IPR050651 | - | |
| Cco04g1472 | 500 | PRINTS | P450 superfamily signature | 355 | 366 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1472 | 500 | PRINTS | P450 superfamily signature | 438 | 449 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1472 | 500 | PRINTS | P450 superfamily signature | 429 | 438 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1472 | 500 | PRINTS | P450 superfamily signature | 302 | 319 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1472 | 500 | FunFam | Cytochrome P450 family protein | 26 | 495 | - | - | |
| Cco04g1472 | 500 | SUPERFAMILY | Cytochrome P450 | 35 | 492 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1472 | 500 | Gene3D | Cytochrome P450 | 20 | 491 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco02g0879 | Cco-Chr2:10508197 | Cco04g1472 | Cco-Chr4:30157823 | 1.30E-161 | dispersed | |
| Cco04g1472 | Cco-Chr4:30157823 | Cco06g0155 | Cco-Chr6:1584689 | 3.20E-160 | dispersed | |
| Cco04g1470 | Cco-Chr4:30145027 | Cco04g1472 | Cco-Chr4:30157823 | 3.90E-211 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco04g1472 | K13260 | - | csv:101215449 | 865.914 |