Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1499 ATGGGTCGCTTCAATCTCCTTATTGTACTCTCTCTTCTTTCTCCCTTCTTCTTTCCTTCCCCAACACTCGCCCAACTCCGACAAAACTTCTACGCCAATATTTGCCCCAATGTCGAAAACATTGTCCGCTCCGAAGTTACCAAAAAATTTCAACAAACTTTCGTCACTGTTCCCGCCACTCTCCGCCTCTTCTTCCATGATTGCTTTGTTCAGGGATGTGATGCCTCTGTAATTATTGCTTCCACCGCATCCAACAAGGCCGAGAAGGACCATCCCGATAACCTCTCACTCGCCGGAGATGGATTCGACACCGTCATCAAAGCTAAAGCCGCCCTCGACGCCGTCCCTCAATGCCGAAACAGAGTCTCCTGTGCCGATATTCTCGCTTTAGCCACTCGTGATGTCATCGCATTGTCCGGCGGACCATCGTATGCGGTGGAGCTGGGAAGATTAGACGGCCTGGTTTCTAGAGCCTCCGACGTGGACGGGAGACTTCCAGCACCGACGTTTAATCTCAATCAGCTCAATTCTCTGTTTGCTGCGAATGGGCTTACACAACAAGACATGATCGCACTCTCAGCGGCTCACACCGTGGGATTCTCCCACTGTGGAAAATTCTCAAATCGAATTTACAGCTTTGCCCCTGGGAAACAAGTGGACCCTACACTAAACAAAACGTATGCAACCCAGCTACAAGCGATGTGCCCGAAGAATGTGGACCCGAGAGTGGCGATTAACATGGACCCAATCACGCCCAGAGCGTTTGACAACATTTACTTTAGAAATCTACAGCAAGGGATGGGGTTGTTCGCGTCGGACCAGGTTCTATTTACGGACGCCCGGTCCAGGCCCACAGTGAACGCGTGGGCTACCAATTCCCAAGCCTTTAATAAAGCGTTTATTGAAGCTATGACTAAGTTGGGGCGGGTCGGGGTGAAGACCGGTAGAAACGGTAATATTCGGCGCGATTGTGGAGCTTTCAATTGA 987 50.56 MGRFNLLIVLSLLSPFFFPSPTLAQLRQNFYANICPNVENIVRSEVTKKFQQTFVTVPATLRLFFHDCFVQGCDASVIIASTASNKAEKDHPDNLSLAGDGFDTVIKAKAALDAVPQCRNRVSCADILALATRDVIALSGGPSYAVELGRLDGLVSRASDVDGRLPAPTFNLNQLNSLFAANGLTQQDMIALSAAHTVGFSHCGKFSNRIYSFAPGKQVDPTLNKTYATQLQAMCPKNVDPRVAINMDPITPRAFDNIYFRNLQQGMGLFASDQVLFTDARSRPTVNAWATNSQAFNKAFIEAMTKLGRVGVKTGRNGNIRRDCGAFN 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30414089 30415393 + CcPI632755_04g014990.1 Cco04g1499 176724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1499 328 ProSitePatterns Peroxidases proximal heme-ligand signature. 188 198 IPR019793 -
Cco04g1499 328 Gene3D - 29 328 - -
Cco04g1499 328 PRINTS Haem peroxidase superfamily signature 188 203 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1499 328 PRINTS Haem peroxidase superfamily signature 140 152 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1499 328 PRINTS Haem peroxidase superfamily signature 122 139 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1499 328 PRINTS Haem peroxidase superfamily signature 248 263 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1499 328 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1499 328 ProSitePatterns Peroxidases active site signature. 57 68 IPR019794 GO:0004601(InterPro)
Cco04g1499 328 FunFam Peroxidase 29 174 - -
Cco04g1499 328 CDD secretory_peroxidase 25 327 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cco04g1499 328 Pfam Peroxidase 42 292 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1499 328 ProSiteProfiles Plant heme peroxidase family profile. 25 328 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1499 328 FunFam Peroxidase 166 307 - -
Cco04g1499 328 Gene3D Peroxidase, domain 2 166 307 - -
Cco04g1499 328 SUPERFAMILY Heme-dependent peroxidases 25 328 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1499 328 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1499 328 PRINTS Plant peroxidase signature 140 155 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1499 328 PRINTS Plant peroxidase signature 262 279 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1499 328 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1499 328 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1499 328 PRINTS Plant peroxidase signature 302 315 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1499 328 PRINTS Plant peroxidase signature 121 131 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1499 328 PRINTS Plant peroxidase signature 187 199 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1499 328 PRINTS Plant peroxidase signature 246 261 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1499 328 PANTHER - 13 328 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1437 Cco-Chr1:26147403 Cco04g1499 Cco-Chr4:30414089 1.00E-77 dispersed
Cco02g1316 Cco-Chr2:24978794 Cco04g1499 Cco-Chr4:30414089 4.00E-143 dispersed
Cco04g1499 Cco-Chr4:30414089 Cco05g1994 Cco-Chr5:29062166 1.30E-114 dispersed
Cco02g2050 Cco-Chr2:33449353 Cco04g1499 Cco-Chr4:30414089 2.20E-48 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1499 K00430 - csv:101206860 612.838