Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1501 ATGAGTTGCAACGGTTGCCGTGTTCTTCGTAAGGGCTGCAGCGAATCCTGTATTCTTCGCCCTTGTTTGCAGTGGATTGACACCGCCGAAGCTCAAGGTCACGCTACTGTCTTCGTCGCTAAGTTCTTCGGCCGTGCCGGCCTCATGTCCTTCATCTCCGCCGTCCCTGAATCTCAGCGACCTTCTTTGTTTCAGTCTTTGTTGTTCGAAGCCTGCGGACGCACCGTCAATCCCGTCAACGGCGCCGTTGGTCTTCTCTGGACTGGCAACTGGCACGTTTGTCAGGCCGCCGTCGACACCGTCCTACGAGGCGGCACTTTGCGGCCAATCAATGATTTCCTTGCTGCTGGATCCCCCAATCTAGCCTCCGACGACACTTCCGAGGCTGAAGTAGGCTGTACCGACATGTGGAAGATACGAGATTCTTATCCCAATTCTCGATTCTCCAACTCTCGATCCAGGCTCTCACCAAAACGCAAACGATCCGAGGAATCATCTCCCAAACACCAACTGAATGACCTAGATCTCCGCTTGACGCCCACTTTTCCAGCCAAATCAACCCTGCGCGCGGCTACTCCATCCATGAATTCCGAGGAATCCGAGACCACAACGTGCTTCGAGAGCGGCCTTGGGGATAATCATCATCAACATCAATACTATCCAGAAGAAGGAACTACCCAACGGAAACTTCTCAATTTGTTCGTCTAA 708 52.97 MSCNGCRVLRKGCSESCILRPCLQWIDTAEAQGHATVFVAKFFGRAGLMSFISAVPESQRPSLFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVDTVLRGGTLRPINDFLAAGSPNLASDDTSEAEVGCTDMWKIRDSYPNSRFSNSRSRLSPKRKRSEESSPKHQLNDLDLRLTPTFPAKSTLRAATPSMNSEESETTTCFESGLGDNHHQHQYYPEEGTTQRKLLNLFV 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30444222 30445013 - CcPI632755_04g015010.1 Cco04g1501 176726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1501 235 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 234 - GO:0010468(PANTHER)
Cco04g1501 235 Pfam Lateral organ boundaries (LOB) domain 2 100 IPR004883 -
Cco04g1501 235 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Cco04g1501 235 MobiDBLite consensus disorder prediction 156 171 - -
Cco04g1501 235 MobiDBLite consensus disorder prediction 185 211 - -
Cco04g1501 235 MobiDBLite consensus disorder prediction 146 218 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1501 Cco-Chr4:30444222 Cco05g1355 Cco-Chr5:14554073 1.40E-44 dispersed
Cco04g1501 Cco-Chr4:30444222 Cco05g2313 Cco-Chr5:31710860 1.50E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59079 PF03195 LOB 4.00E-25 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1501 - - - 0.0