Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g1501 | ATGAGTTGCAACGGTTGCCGTGTTCTTCGTAAGGGCTGCAGCGAATCCTGTATTCTTCGCCCTTGTTTGCAGTGGATTGACACCGCCGAAGCTCAAGGTCACGCTACTGTCTTCGTCGCTAAGTTCTTCGGCCGTGCCGGCCTCATGTCCTTCATCTCCGCCGTCCCTGAATCTCAGCGACCTTCTTTGTTTCAGTCTTTGTTGTTCGAAGCCTGCGGACGCACCGTCAATCCCGTCAACGGCGCCGTTGGTCTTCTCTGGACTGGCAACTGGCACGTTTGTCAGGCCGCCGTCGACACCGTCCTACGAGGCGGCACTTTGCGGCCAATCAATGATTTCCTTGCTGCTGGATCCCCCAATCTAGCCTCCGACGACACTTCCGAGGCTGAAGTAGGCTGTACCGACATGTGGAAGATACGAGATTCTTATCCCAATTCTCGATTCTCCAACTCTCGATCCAGGCTCTCACCAAAACGCAAACGATCCGAGGAATCATCTCCCAAACACCAACTGAATGACCTAGATCTCCGCTTGACGCCCACTTTTCCAGCCAAATCAACCCTGCGCGCGGCTACTCCATCCATGAATTCCGAGGAATCCGAGACCACAACGTGCTTCGAGAGCGGCCTTGGGGATAATCATCATCAACATCAATACTATCCAGAAGAAGGAACTACCCAACGGAAACTTCTCAATTTGTTCGTCTAA | 708 | 52.97 | MSCNGCRVLRKGCSESCILRPCLQWIDTAEAQGHATVFVAKFFGRAGLMSFISAVPESQRPSLFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVDTVLRGGTLRPINDFLAAGSPNLASDDTSEAEVGCTDMWKIRDSYPNSRFSNSRSRLSPKRKRSEESSPKHQLNDLDLRLTPTFPAKSTLRAATPSMNSEESETTTCFESGLGDNHHQHQYYPEEGTTQRKLLNLFV | 235 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 30444222 | 30445013 | - | CcPI632755_04g015010.1 | Cco04g1501 | 176726 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g1501 | 235 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 38 | 1 | 234 | - | GO:0010468(PANTHER) | |
Cco04g1501 | 235 | Pfam | Lateral organ boundaries (LOB) domain | 2 | 100 | IPR004883 | - | |
Cco04g1501 | 235 | ProSiteProfiles | LOB domain profile. | 1 | 107 | IPR004883 | - | |
Cco04g1501 | 235 | MobiDBLite | consensus disorder prediction | 156 | 171 | - | - | |
Cco04g1501 | 235 | MobiDBLite | consensus disorder prediction | 185 | 211 | - | - | |
Cco04g1501 | 235 | MobiDBLite | consensus disorder prediction | 146 | 218 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g1501 | Cco-Chr4:30444222 | Cco05g1355 | Cco-Chr5:14554073 | 1.40E-44 | dispersed | |
Cco04g1501 | Cco-Chr4:30444222 | Cco05g2313 | Cco-Chr5:31710860 | 1.50E-51 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59079 | PF03195 | LOB | 4.00E-25 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g1501 | - | - | - | 0.0 |