Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1511 ATGGATACCTTGTTTCGGCTTGTCAATCTTCAATCTGAACAATCTTACAATTCCAGTAGAACTAATTCTAGCAGCTCTAGATCTTCTAGACAAAACCAATATCATCATTACCATCAACAGGATCAAGACGAAGAATGCTACAATCTTCTCATGGATGAGGAAGATTTCTCATCGTCTAGTAATTCTAGACAATATTATAATCCATACCATCCTCACCCACCTTCTACGGCTACTCCCACCGCCACCGCCACCGCCTCCACCACTCCAACTCCGATAGATCAATTCTCATTCGTTTCCCCTTCACCGGATTTCAACTTCGAATTTTCCGGGAGGTGGGCCCCTGATATTCTCCTTCAAACCGCTAGGGCTATTTCTGACAGGAACAGCGCCCGCGTTCAGCAACTCATGTGGATGCTAAACGAACTTAGCTCTCCCTATGGAGATACGGATCAAAAGCTGGCTGCCTATTTCCTGCAGGCTTTGTTTAGCCGTATGACAGATTCCGGCGACCGTAATTACCGCGCTTTGGCCTCCGCTTCAGAGAAAACATGCTCATTCGAATCAACTAGGAAAGTGATGCTCAAGTTTCAGGAGGTTAGCCCCTGGACCACTTTTGGCCATGTTTCTTGTAATGGCGCATTAATTGAAGCCTTAGAAGGCGAAACAAAGCTACATATAATCGATATCAGCAACACCTATTGCACTCAATGGCCTACTTTGCTTGAAGCTCTTGCAACTCGTACGGACGACACGCCGCACCTCCGCCTCACCACGGTGGTTACCACTAAGCCAAGCGGTGGGACTGGAGTAGCCGCGTCTCAAAAAGTAATGAAAGAAATAGGTACAAGAATGGAAAAGTTCGCTAGGCTTATGGGCGTACCTTTTAAATTCAATGCGCTGTACCATTCCGGTGACCTTTCGGAATTGGACTTAACCAAATTAGACATTAAAGAAGACGAAGCACTTGCCGTTAACTGCGTCGGAGCCTTACGTTCCGTGACGGCGATTAACAACCGTCGAGATTTCTTGATTTCGTCTTTCCGCAGTTTACGGCCACGGATTATCACGGTGATAGAAGAGGAAGCCGATCTCGACGTTGGCGTCGATGGTATTGAATTTATGAGAGGGTTTCAAGAATGTTTGCGGTGGTTTAGGGTTTACTTCGAGACATTGGATGAGAGTTTCTCAAGGACGAGCAACGAACGGTTGATGCTCGAGAGAGCGGCCGGTAGGGCAATCGTGGACCTAGTGGCTTGCTCGGCGGCGGACTCGGTTGAGAGGCGGGAATCGGCGGCGCGGTGGGCTCAGCGGCTGCATGGAAACGGATTCGGTCCGGTGACGTTCAGCGATGAAGTGTGCGACGACGTTAGGGCGCTGTTGAGGAGATACAAGGAAGGATGGGCAATGACACAGAGCTCCGACGTCGCCGGAATATTCTTGACGTGGAAAGAGCAACCGGTAGTGTGGGCCAGTGCATGGAGACCTTGA 1488 49.13 MDTLFRLVNLQSEQSYNSSRTNSSSSRSSRQNQYHHYHQQDQDEECYNLLMDEEDFSSSSNSRQYYNPYHPHPPSTATPTATATASTTPTPIDQFSFVSPSPDFNFEFSGRWAPDILLQTARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDSGDRNYRALASASEKTCSFESTRKVMLKFQEVSPWTTFGHVSCNGALIEALEGETKLHIIDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTTKPSGGTGVAASQKVMKEIGTRMEKFARLMGVPFKFNALYHSGDLSELDLTKLDIKEDEALAVNCVGALRSVTAINNRRDFLISSFRSLRPRIITVIEEEADLDVGVDGIEFMRGFQECLRWFRVYFETLDESFSRTSNERLMLERAAGRAIVDLVACSAADSVERRESAARWAQRLHGNGFGPVTFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQPVVWASAWRP 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30542929 30544416 - CcPI632755_04g015110.1 Cco04g1511 176736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1511 495 Pfam GRAS domain family 116 494 IPR005202 -
Cco04g1511 495 MobiDBLite consensus disorder prediction 14 41 - -
Cco04g1511 495 MobiDBLite consensus disorder prediction 14 33 - -
Cco04g1511 495 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 64 493 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0008356(PANTHER)|GO:0009956(PANTHER)|GO:0043565(PANTHER)|GO:0045930(PANTHER)|GO:0048366(PANTHER)|GO:0055072(PANTHER)
Cco04g1511 495 MobiDBLite consensus disorder prediction 58 94 - -
Cco04g1511 495 ProSiteProfiles GRAS family profile. 104 494 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1360 Cco-Chr2:25637267 Cco04g1511 Cco-Chr4:30542929 4.00E-142 dispersed
Cco04g1511 Cco-Chr4:30542929 Cco06g0100 Cco-Chr6:927779 1.60E-116 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59082 PF03514 GRAS 3.10E-105 CL0063 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1511 K27743 - csv:101204711 876.7