Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1512 ATGGGGAAGAAACAGCACAGTAAAGACCGTCTGTTTATAACGAAAACTGAATGGGCCACCGAATGGGGTGGCGCCAAACCCAAGGACTCTCAAACCCCTTTCAAACGCCTTCCTTTCTATTGCTGCGCGCTTACATTTACACCCTTCGAGGACCCTGTTTGTACCGCCGATGGCAGCGTGTTCGAGATTATGAATATCATCCCTTATATTCGAAAGTATGGTAAAAATCCTGTTACTGGAGCTTCCCTGAAGCAGGAGGAACTAATTCCGCTGACATTCCACAAGAATTCTGAAGGCGAGTTCCAATGTCCTGTACTAAACAAAGTTTTTACCGAGTTCACTCACATAGTTGCTATAAAGACCACTGGAAATGTCTTCTGCTACGAGGCAGTTAAAGAATTAAATATCAAGACAAAAAACTGGAAGGAACTTCTCACTGATGAACCATTTAGTAGGGGAGATATTATAACCATTCAGAACCCTAGTGCTCTTGATAGTAAGGTTCTACTGGATTTTGATCATGTGAAAAATAGCCTAAAAGTTGATGATGAAGAACTTCAAAAAATGAAATCAGATCCAACATATAACATAAATGTGTCGGGGGACATCAAGCAGATGCTGCAGGAACTTGGAACCGAAAAGGGAAGGCAAACTGCACTTCATGGGGGAGGTGGTGGCAAGGCACAAAAAGAAAGGGCGGCTGCACTTGCTGCAATTTTAGCTGCTAGGTCACGCATTAAAGAGGACTCCAAGGAGAATGCAAAAGGAGAGGATAAACCTACACAGGCATTTAGTATTGTGGATGCTGCATCTGCCTCAGTGCATGGAAGAAGTGCAGCTGCTGCGAAAGCTGCACCAAGTGAAAAAACTGCTGCTCGAATTGCGATGCACATGGCGGGTGAGAGGGCACCAGTAAATGCTAAAATGGTAAAGAGTCGTTACACTACTGGTGCTGCATCCCGGTCCTTCACATCTACATCTTACGACCCTGTTACAAAGAATGAACATGAATATATCAAGGTTGAGAAAAACCCAAAGAAGAAAGGATATGTACAGTTGCATACAACACATGGAGATTTGAATATTGAACTACATTGTGATATTACTCCAAGAACATGCGAGAATTTCATCACACTTTGTGAAAATGGCTACTATAATGGAGTTGCTTTTCATAGAAGTATTAGGAATTTCATGATTCAAGGTGGTGATCCAACTGGTACTGGGAGAGGGGGTGAATCTATATGGGGAAAGCCCTTCAAAGATGAACTTAACTCCAAGCTGCTTCATTCTGGAAGGGGTGTTGTCAGTATGGCAAATAGTGGTCCCCACACTAATGGTTCCCAGTTCTTTATTCTTTACAAATCTGCCAATCACTTAAACTTCAAGCATACCGTATTTGGCGGTGTTGTTGGTGGGTTGACTGCTTTGGCAGCAATGGAAAAGGTTCCTGTTGATGACAATGATCGGCCTCTGGAGGAGATCAAGATAACGAGTGTCACAGTTTTTGTGAATCCATACTCGGAACCTGATGAAGAGGAAGAAAAGCAAAAAGACGAGAAGAATGTGGAGGATGAAGAAAACGATAAGGTTGGATCATGGTATAGTAACCCAGGCACCGGGGTAGCTGAAGATGGAGCTGCTGGTGGCGGTGTAGGGAAGTATTTGAAAGCAAGAAATGCCCAATCCAAACCCCCAGCTGTTGATAGTAGTCTAAAACAAACTACCTCGACCAAGAAAAGAACAGCTGCAGGAGAATTCAAAGACTTCTCTTCTTGGTAA 1779 43.23 MGKKQHSKDRLFITKTEWATEWGGAKPKDSQTPFKRLPFYCCALTFTPFEDPVCTADGSVFEIMNIIPYIRKYGKNPVTGASLKQEELIPLTFHKNSEGEFQCPVLNKVFTEFTHIVAIKTTGNVFCYEAVKELNIKTKNWKELLTDEPFSRGDIITIQNPSALDSKVLLDFDHVKNSLKVDDEELQKMKSDPTYNINVSGDIKQMLQELGTEKGRQTALHGGGGGKAQKERAAALAAILAARSRIKEDSKENAKGEDKPTQAFSIVDAASASVHGRSAAAAKAAPSEKTAARIAMHMAGERAPVNAKMVKSRYTTGAASRSFTSTSYDPVTKNEHEYIKVEKNPKKKGYVQLHTTHGDLNIELHCDITPRTCENFITLCENGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDELNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGGVVGGLTALAAMEKVPVDDNDRPLEEIKITSVTVFVNPYSEPDEEEEKQKDEKNVEDEENDKVGSWYSNPGTGVAEDGAAGGGVGKYLKARNAQSKPPAVDSSLKQTTSTKKRTAAGEFKDFSSW 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30551298 30554647 - CcPI632755_04g015120.1 Cco04g1512 176737

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1512 592 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 96 IPR013083 -
Cco04g1512 592 MobiDBLite consensus disorder prediction 563 580 - -
Cco04g1512 592 FunFam Peptidyl-prolyl cis-trans isomerase cyp65 331 515 - -
Cco04g1512 592 ProSiteProfiles U-box domain profile. 35 108 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco04g1512 592 MobiDBLite consensus disorder prediction 508 530 - -
Cco04g1512 592 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 433 448 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco04g1512 592 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 364 379 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco04g1512 592 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 390 402 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco04g1512 592 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 448 460 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco04g1512 592 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 461 476 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco04g1512 592 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 385 402 IPR020892 GO:0003755(InterPro)|GO:0006457(InterPro)
Cco04g1512 592 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 350 501 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco04g1512 592 SMART Ubox_2 39 101 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco04g1512 592 Coils Coil 508 528 - -
Cco04g1512 592 Gene3D - 330 515 IPR029000 -
Cco04g1512 592 CDD cyclophilin_RING 350 508 - -
Cco04g1512 592 FunFam Peptidyl-prolyl cis-trans isomerase 2 41 96 - -
Cco04g1512 592 SUPERFAMILY Cyclophilin-like 350 517 IPR029000 -
Cco04g1512 592 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 339 507 IPR044666 GO:0000209(PANTHER)|GO:0061630(PANTHER)|GO:0071013(PANTHER)
Cco04g1512 592 MobiDBLite consensus disorder prediction 503 592 - -
Cco04g1512 592 Pfam U-box domain 39 91 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco04g1512 592 SUPERFAMILY RING/U-box 37 104 - -
Cco04g1512 592 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 354 501 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco04g1512 592 CDD RING-Ubox_PPIL2 38 110 IPR026951 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1512 K10598 - - csv:101204462 1070.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1512 Cco-Chr4:30551298 Cco06g0192 Cco-Chr6:2011036 1.60E-30 dispersed
Cco01g1378 Cco-Chr1:24532479 Cco04g1512 Cco-Chr4:30551298 4.90E-41 transposed
Cco05g0251 Cco-Chr5:1981795 Cco04g1512 Cco-Chr4:30551298 1.80E-48 transposed
Cco05g2043 Cco-Chr5:29498297 Cco04g1512 Cco-Chr4:30551298 1.40E-37 transposed
Cco10g1866 Cco-Chr10:32255126 Cco04g1512 Cco-Chr4:30551298 4.00E-43 transposed
Cco02g2090 Cco-Chr2:33780555 Cco04g1512 Cco-Chr4:30551298 1.20E-25 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco10g1534 . 1 1041 U-box Gene Family AT5G15400 76.1 0.0e+00 1579.3
Cco02g1344 . 296 940 U-box Gene Family AT2G23140 66.2 1.4e-123 440.7
Cco08g1897 . 1 780 U-box Gene Family AT1G24330 59.8 1.3e-245 846.3
Cco11g1436 . 1 755 U-box Gene Family AT1G24330 58.2 1.0e-229 793.5
Cco08g1897 . 1 779 U-box Gene Family AT1G67530 59.8 2.8e-243 838.6
Cco11g1436 . 1 756 U-box Gene Family AT1G67530 57.3 2.3e-226 782.3
Cco04g2025 . 1 362 U-box Gene Family AT4G21350 61.8 7.0e-120 427.6
Cco07g0211 . 135 455 U-box Gene Family AT3G07360 54.6 5.2e-79 291.6
Cco07g0680 . 265 452 U-box Gene Family AT1G71020 70.9 8.3e-73 271.6
Cco01g0639 . 1067 1266 U-box Gene Family AT1G71020 55.4 1.5e-53 207.6
Cco03g0164 . 276 445 U-box Gene Family AT1G71020 57.8 9.2e-48 188.3
Cco05g2381 . 249 414 U-box Gene Family AT1G71020 58.0 4.6e-47 186.0
Cco02g2163 . 255 425 U-box Gene Family AT1G71020 57.6 1.7e-46 184.1
Cco07g0680 . 16 656 U-box Gene Family AT1G23030 56.6 2.8e-110 396.4
Cco01g0639 . 853 1456 U-box Gene Family AT1G23030 51.9 3.3e-82 303.1
Cco03g0164 . 111 650 U-box Gene Family AT2G28830 59.7 2.3e-101 366.7
Cco02g2163 . 93 635 U-box Gene Family AT2G28830 50.6 8.2e-99 358.2
Cco03g0164 . 19 688 U-box Gene Family AT3G46510 67.8 1.9e-168 589.7
Cco02g2163 . 3 638 U-box Gene Family AT3G46510 66.4 2.0e-157 553.1
Cco05g2381 . 16 623 U-box Gene Family AT3G46510 58.8 3.9e-121 432.6
Cco05g2381 . 12 625 U-box Gene Family AT3G54850 68.5 6.7e-163 571.2
Cco02g2163 . 13 628 U-box Gene Family AT3G54850 57.1 5.7e-114 408.7
Cco02g1080 . 92 644 U-box Gene Family AT5G42340 64.0 9.5e-128 454.5
Cco04g0823 . 9 669 U-box Gene Family AT5G01830 57.4 1.5e-197 686.4
Cco03g0707 . 1 714 U-box Gene Family AT1G29340 67.9 7.2e-246 847.0
Cco05g1300 . 27 405 U-box Gene Family AT5G37490 51.8 7.2e-100 361.3
Cco04g0773 . 4 422 U-box Gene Family AT3G52450 51.9 6.9e-119 424.5
Cco10g1817 . 1 403 U-box Gene Family AT3G52450 50.5 2.3e-114 409.5
Cco10g1817 . 1 403 U-box Gene Family AT2G35930 55.1 1.0e-119 427.2
Cco04g0773 . 4 422 U-box Gene Family AT2G35930 50.8 1.2e-115 413.7
Cco05g1175 . 9 424 U-box Gene Family AT3G19380 64.4 2.0e-147 519.2
Cco05g1175 . 1 424 U-box Gene Family AT1G49780 64.6 6.0e-152 534.3
Cco04g1311 . 1 407 U-box Gene Family AT5G64660 53.7 2.1e-120 429.5
Cco04g1311 . 1 407 U-box Gene Family AT5G09800 50.6 5.4e-105 378.3
Cco08g1844 . 1 454 U-box Gene Family AT3G49810 63.2 1.8e-154 542.7
Cco05g2930 . 1 454 U-box Gene Family AT3G49810 62.8 5.8e-153 537.7
Cco08g1844 . 1 454 U-box Gene Family AT5G65920 64.3 3.0e-154 542.0
Cco05g2930 . 1 454 U-box Gene Family AT5G65920 61.5 8.0e-147 517.3
Cco05g0188 . 1 872 U-box Gene Family AT2G45910 52.9 3.0e-235 812.0
Cco01g0483 . 68 847 U-box Gene Family AT4G25160 50.4 1.9e-213 739.6
Cco09g2079 . 1 551 U-box Gene Family AT5G40140 53.9 3.3e-94 342.8
Cco01g1435 . 29 498 U-box Gene Family AT5G40140 51.9 4.0e-55 213.0
Cco08g1083 . 1 516 U-box Gene Family AT1G76390 64.3 3.3e-175 612.5
Cco08g1086 . 26 312 U-box Gene Family AT1G76390 55.6 2.1e-84 310.8
Cco08g1083 . 1 516 U-box Gene Family AT1G20780 63.8 3.2e-178 622.5
Cco08g1086 . 35 312 U-box Gene Family AT1G20780 57.7 3.3e-90 330.1
Cco08g1897 . 1 782 U-box Gene Family AT1G27910 62.8 6.4e-269 923.7
Cco11g1436 . 1 767 U-box Gene Family AT1G27910 62.3 1.5e-262 902.5
Cco04g1512 . 1 592 U-box Gene Family AT5G67530 74.2 2.9e-261 897.9
Cco05g0251 . 657 814 U-box Gene Family AT5G67530 52.5 3.1e-45 180.3
Cco10g1866 . 12 162 U-box Gene Family AT5G67530 50.3 9.4e-42 168.7
Cco04g1594 . 48 845 U-box Gene Family AT5G65500 50.1 5.9e-209 724.5
Cco05g0459 . 1 517 U-box Gene Family AT1G04510 74.4 4.0e-222 767.7
Cco05g0459 . 1 486 U-box Gene Family AT2G33340 73.6 3.6e-209 724.5
Cco07g0210 . 10 278 U-box Gene Family AT3G07370 66.9 2.9e-102 368.6
Cco10g1534 . 1 1041 U-box Gene Family AT5G15400 76.1 0.0e+00 1579.3
Cco02g1344 . 296 940 U-box Gene Family AT2G23140 66.2 1.4e-123 440.7
Cco08g1897 . 1 780 U-box Gene Family AT1G24330 59.8 1.3e-245 846.3
Cco11g1436 . 1 755 U-box Gene Family AT1G24330 58.2 1.0e-229 793.5
Cco08g1897 . 1 779 U-box Gene Family AT1G67530 59.8 2.8e-243 838.6
Cco11g1436 . 1 756 U-box Gene Family AT1G67530 57.3 2.3e-226 782.3
Cco04g2025 . 1 362 U-box Gene Family AT4G21350 61.8 7.0e-120 427.6
Cco07g0211 . 135 455 U-box Gene Family AT3G07360 54.6 5.2e-79 291.6
Cco07g0680 . 265 452 U-box Gene Family AT1G71020 70.9 8.3e-73 271.6
Cco01g0639 . 1067 1266 U-box Gene Family AT1G71020 55.4 1.5e-53 207.6
Cco03g0164 . 276 445 U-box Gene Family AT1G71020 57.8 9.2e-48 188.3
Cco05g2381 . 249 414 U-box Gene Family AT1G71020 58.0 4.6e-47 186.0
Cco02g2163 . 255 425 U-box Gene Family AT1G71020 57.6 1.7e-46 184.1
Cco07g0680 . 16 656 U-box Gene Family AT1G23030 56.6 2.8e-110 396.4
Cco01g0639 . 853 1456 U-box Gene Family AT1G23030 51.9 3.3e-82 303.1
Cco03g0164 . 111 650 U-box Gene Family AT2G28830 59.7 2.3e-101 366.7
Cco02g2163 . 93 635 U-box Gene Family AT2G28830 50.6 8.2e-99 358.2
Cco03g0164 . 19 688 U-box Gene Family AT3G46510 67.8 1.9e-168 589.7
Cco02g2163 . 3 638 U-box Gene Family AT3G46510 66.4 2.0e-157 553.1
Cco05g2381 . 16 623 U-box Gene Family AT3G46510 58.8 3.9e-121 432.6
Cco05g2381 . 12 625 U-box Gene Family AT3G54850 68.5 6.7e-163 571.2
Cco02g2163 . 13 628 U-box Gene Family AT3G54850 57.1 5.7e-114 408.7
Cco02g1080 . 92 644 U-box Gene Family AT5G42340 64.0 9.5e-128 454.5
Cco04g0823 . 9 669 U-box Gene Family AT5G01830 57.4 1.5e-197 686.4
Cco03g0707 . 1 714 U-box Gene Family AT1G29340 67.9 7.2e-246 847.0
Cco05g1300 . 27 405 U-box Gene Family AT5G37490 51.8 7.2e-100 361.3
Cco04g0773 . 4 422 U-box Gene Family AT3G52450 51.9 6.9e-119 424.5
Cco10g1817 . 1 403 U-box Gene Family AT3G52450 50.5 2.3e-114 409.5
Cco10g1817 . 1 403 U-box Gene Family AT2G35930 55.1 1.0e-119 427.2
Cco04g0773 . 4 422 U-box Gene Family AT2G35930 50.8 1.2e-115 413.7
Cco05g1175 . 9 424 U-box Gene Family AT3G19380 64.4 2.0e-147 519.2
Cco05g1175 . 1 424 U-box Gene Family AT1G49780 64.6 6.0e-152 534.3
Cco04g1311 . 1 407 U-box Gene Family AT5G64660 53.7 2.1e-120 429.5
Cco04g1311 . 1 407 U-box Gene Family AT5G09800 50.6 5.4e-105 378.3
Cco08g1844 . 1 454 U-box Gene Family AT3G49810 63.2 1.8e-154 542.7
Cco05g2930 . 1 454 U-box Gene Family AT3G49810 62.8 5.8e-153 537.7
Cco08g1844 . 1 454 U-box Gene Family AT5G65920 64.3 3.0e-154 542.0
Cco05g2930 . 1 454 U-box Gene Family AT5G65920 61.5 8.0e-147 517.3
Cco05g0188 . 1 872 U-box Gene Family AT2G45910 52.9 3.0e-235 812.0
Cco01g0483 . 68 847 U-box Gene Family AT4G25160 50.4 1.9e-213 739.6
Cco09g2079 . 1 551 U-box Gene Family AT5G40140 53.9 3.3e-94 342.8
Cco01g1435 . 29 498 U-box Gene Family AT5G40140 51.9 4.0e-55 213.0
Cco08g1083 . 1 516 U-box Gene Family AT1G76390 64.3 3.3e-175 612.5
Cco08g1086 . 26 312 U-box Gene Family AT1G76390 55.6 2.1e-84 310.8
Cco08g1083 . 1 516 U-box Gene Family AT1G20780 63.8 3.2e-178 622.5
Cco08g1086 . 35 312 U-box Gene Family AT1G20780 57.7 3.3e-90 330.1
Cco08g1897 . 1 782 U-box Gene Family AT1G27910 62.8 6.4e-269 923.7
Cco11g1436 . 1 767 U-box Gene Family AT1G27910 62.3 1.5e-262 902.5
Cco04g1512 . 1 592 U-box Gene Family AT5G67530 74.2 2.9e-261 897.9
Cco05g0251 . 657 814 U-box Gene Family AT5G67530 52.5 3.1e-45 180.3
Cco10g1866 . 12 162 U-box Gene Family AT5G67530 50.3 9.4e-42 168.7
Cco04g1594 . 48 845 U-box Gene Family AT5G65500 50.1 5.9e-209 724.5
Cco05g0459 . 1 517 U-box Gene Family AT1G04510 74.4 4.0e-222 767.7
Cco05g0459 . 1 486 U-box Gene Family AT2G33340 73.6 3.6e-209 724.5
Cco07g0210 . 10 278 U-box Gene Family AT3G07370 66.9 2.9e-102 368.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005406 1 2 3 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39