Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1512 ATGGGGAAGAAACAGCACAGTAAAGACCGTCTGTTTATAACGAAAACTGAATGGGCCACCGAATGGGGTGGCGCCAAACCCAAGGACTCTCAAACCCCTTTCAAACGCCTTCCTTTCTATTGCTGCGCGCTTACATTTACACCCTTCGAGGACCCTGTTTGTACCGCCGATGGCAGCGTGTTCGAGATTATGAATATCATCCCTTATATTCGAAAGTATGGTAAAAATCCTGTTACTGGAGCTTCCCTGAAGCAGGAGGAACTAATTCCGCTGACATTCCACAAGAATTCTGAAGGCGAGTTCCAATGTCCTGTACTAAACAAAGTTTTTACCGAGTTCACTCACATAGTTGCTATAAAGACCACTGGAAATGTCTTCTGCTACGAGGCAGTTAAAGAATTAAATATCAAGACAAAAAACTGGAAGGAACTTCTCACTGATGAACCATTTAGTAGGGGAGATATTATAACCATTCAGAACCCTAGTGCTCTTGATAGTAAGGTTCTACTGGATTTTGATCATGTGAAAAATAGCCTAAAAGTTGATGATGAAGAACTTCAAAAAATGAAATCAGATCCAACATATAACATAAATGTGTCGGGGGACATCAAGCAGATGCTGCAGGAACTTGGAACCGAAAAGGGAAGGCAAACTGCACTTCATGGGGGAGGTGGTGGCAAGGCACAAAAAGAAAGGGCGGCTGCACTTGCTGCAATTTTAGCTGCTAGGTCACGCATTAAAGAGGACTCCAAGGAGAATGCAAAAGGAGAGGATAAACCTACACAGGCATTTAGTATTGTGGATGCTGCATCTGCCTCAGTGCATGGAAGAAGTGCAGCTGCTGCGAAAGCTGCACCAAGTGAAAAAACTGCTGCTCGAATTGCGATGCACATGGCGGGTGAGAGGGCACCAGTAAATGCTAAAATGGTAAAGAGTCGTTACACTACTGGTGCTGCATCCCGGTCCTTCACATCTACATCTTACGACCCTGTTACAAAGAATGAACATGAATATATCAAGGTTGAGAAAAACCCAAAGAAGAAAGGATATGTACAGTTGCATACAACACATGGAGATTTGAATATTGAACTACATTGTGATATTACTCCAAGAACATGCGAGAATTTCATCACACTTTGTGAAAATGGCTACTATAATGGAGTTGCTTTTCATAGAAGTATTAGGAATTTCATGATTCAAGGTGGTGATCCAACTGGTACTGGGAGAGGGGGTGAATCTATATGGGGAAAGCCCTTCAAAGATGAACTTAACTCCAAGCTGCTTCATTCTGGAAGGGGTGTTGTCAGTATGGCAAATAGTGGTCCCCACACTAATGGTTCCCAGTTCTTTATTCTTTACAAATCTGCCAATCACTTAAACTTCAAGCATACCGTATTTGGCGGTGTTGTTGGTGGGTTGACTGCTTTGGCAGCAATGGAAAAGGTTCCTGTTGATGACAATGATCGGCCTCTGGAGGAGATCAAGATAACGAGTGTCACAGTTTTTGTGAATCCATACTCGGAACCTGATGAAGAGGAAGAAAAGCAAAAAGACGAGAAGAATGTGGAGGATGAAGAAAACGATAAGGTTGGATCATGGTATAGTAACCCAGGCACCGGGGTAGCTGAAGATGGAGCTGCTGGTGGCGGTGTAGGGAAGTATTTGAAAGCAAGAAATGCCCAATCCAAACCCCCAGCTGTTGATAGTAGTCTAAAACAAACTACCTCGACCAAGAAAAGAACAGCTGCAGGAGAATTCAAAGACTTCTCTTCTTGGTAA 1779 43.23 MGKKQHSKDRLFITKTEWATEWGGAKPKDSQTPFKRLPFYCCALTFTPFEDPVCTADGSVFEIMNIIPYIRKYGKNPVTGASLKQEELIPLTFHKNSEGEFQCPVLNKVFTEFTHIVAIKTTGNVFCYEAVKELNIKTKNWKELLTDEPFSRGDIITIQNPSALDSKVLLDFDHVKNSLKVDDEELQKMKSDPTYNINVSGDIKQMLQELGTEKGRQTALHGGGGGKAQKERAAALAAILAARSRIKEDSKENAKGEDKPTQAFSIVDAASASVHGRSAAAAKAAPSEKTAARIAMHMAGERAPVNAKMVKSRYTTGAASRSFTSTSYDPVTKNEHEYIKVEKNPKKKGYVQLHTTHGDLNIELHCDITPRTCENFITLCENGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDELNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGGVVGGLTALAAMEKVPVDDNDRPLEEIKITSVTVFVNPYSEPDEEEEKQKDEKNVEDEENDKVGSWYSNPGTGVAEDGAAGGGVGKYLKARNAQSKPPAVDSSLKQTTSTKKRTAAGEFKDFSSW 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30551298 30554647 - CcPI632755_04g015120.1 Cco04g1512 176737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1512 592 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 96 IPR013083 -
Cco04g1512 592 MobiDBLite consensus disorder prediction 563 580 - -
Cco04g1512 592 FunFam Peptidyl-prolyl cis-trans isomerase cyp65 331 515 - -
Cco04g1512 592 ProSiteProfiles U-box domain profile. 35 108 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco04g1512 592 MobiDBLite consensus disorder prediction 508 530 - -
Cco04g1512 592 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 433 448 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco04g1512 592 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 364 379 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco04g1512 592 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 390 402 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco04g1512 592 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 448 460 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco04g1512 592 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 461 476 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco04g1512 592 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 385 402 IPR020892 GO:0003755(InterPro)|GO:0006457(InterPro)
Cco04g1512 592 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 350 501 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco04g1512 592 SMART Ubox_2 39 101 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco04g1512 592 Coils Coil 508 528 - -
Cco04g1512 592 Gene3D - 330 515 IPR029000 -
Cco04g1512 592 CDD cyclophilin_RING 350 508 - -
Cco04g1512 592 FunFam Peptidyl-prolyl cis-trans isomerase 2 41 96 - -
Cco04g1512 592 SUPERFAMILY Cyclophilin-like 350 517 IPR029000 -
Cco04g1512 592 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 339 507 IPR044666 GO:0000209(PANTHER)|GO:0061630(PANTHER)|GO:0071013(PANTHER)
Cco04g1512 592 MobiDBLite consensus disorder prediction 503 592 - -
Cco04g1512 592 Pfam U-box domain 39 91 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco04g1512 592 SUPERFAMILY RING/U-box 37 104 - -
Cco04g1512 592 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 354 501 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco04g1512 592 CDD RING-Ubox_PPIL2 38 110 IPR026951 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1512 Cco-Chr4:30551298 Cco06g0192 Cco-Chr6:2011036 1.60E-30 dispersed
Cco01g1378 Cco-Chr1:24532479 Cco04g1512 Cco-Chr4:30551298 4.90E-41 transposed
Cco05g0251 Cco-Chr5:1981795 Cco04g1512 Cco-Chr4:30551298 1.80E-48 transposed
Cco05g2043 Cco-Chr5:29498297 Cco04g1512 Cco-Chr4:30551298 1.40E-37 transposed
Cco10g1866 Cco-Chr10:32255126 Cco04g1512 Cco-Chr4:30551298 4.00E-43 transposed
Cco02g2090 Cco-Chr2:33780555 Cco04g1512 Cco-Chr4:30551298 1.20E-25 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1512 K10598 - csv:101204462 1070.07