Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1518 ATGGAAAGGTTTTTGGAGGAGAATTTTGGTGGCGTCAAACCTAAAAACTCGTCTGAGGAGGTGCTGCAGAGGTGGAGAGAGCTTTGTGGAGTTGTCAAGAATCCCAAAAGGAGGTTTCGATTCACTGCTAATCTCTCTAAGCGTGGCGAAGCTGCTGCTATGCGACAGAATAATCAGGAGAAGTTGAGGATCGCAGTTTTAGTCTCAAAAGCTGCATTTCAATTCATCCAAGGTGTGCAACCAAGTGACTATACCGTTCCAGAGGAAGTCAAAGCTGCAGGTTTCCATATTTGTGCTGATGAACTTGGGTCTATTGTTGAAGGCCATGATCCAAAGAAGTTTAAATATCATGGCGGGGTTGAAGGGATTGCTGGGAAGCTCTGTACATCAACAACAAATGGGCTTAATGCTGATGCTGATGCACTCAACCGTAGGCAAGAGATTTATGGAGTCAACAAATTTGCTGAGAGCGAACAGAGGAGTTTCTTGGTGTTTGTTTGGGAAGCCCTTCAAGACATGACTCTCATGATCCTTGGACTCTGTGCTTTCGTCTCTTTGGTGGTTGGCATAATAACAGAAGGATGGCCACATGGGGCTCACGATGGCCTTGGAATTGTTGCAAGTATCTTATTAGTTGTGTTTGTCACAGCAACTAGTGATTATCGACAATCCTTGCAGTTCAAGGACTTGGATAAGGAGAAAAAGAAGATATCAATTCAGGTTACAAGGAATGGTTATAGACAGAAAATGTCGATCTACGATTTACTTCCTGGAGATATTGTACACCTGTCTATTGGGGATCAAGTCCCTGCTGATGGACTATTTGTTTCAGGGTTTTCTGTGTTGATTGATGAGTCAAGCTTAACTGGAGAAAGTGAGCCAGTGATGGTGAGTGCAGAAAATCCTTATCTTCTATCTGGGACTAAAGTTCAAGATGGATCCTGCAAGATGATGGTCACTACTGTTGGGATGAGAACCCAATGGGGTAAGTTGATGGCCACTCTTAGTGAAGGTGGAGATGATGAAACTCCATTGCAGGTGAAATTAAATGGGGTGGCAACAATTATTGGGAAAATAGGTCTTTTCTTTGCCATCATCACTTTTGCTGTGTTGGTTCAAGGACTACTTAGCCGTAAAATCCGAGAAGGAACTCACTGGAGCTGGTCTGGAGATGACGCATTAGAGATATTGGAATTCTTTGCTGTTGCAGTTACAATTGTTGTTGTTGCTGTGCCAGAGGGGCTTCCTTTGGCTGTGACGTTAAGCCTTGCCTTTGCCATGAAGAAAATGATGAATGATAAGGCTCTGGTCCGTCACCTGGCAGCTTGTGAAACTATGGGTTCTGCCACAAGTATTTGTAGTGACAAAACTGGGACAATCACCACAAATCGCATGACAGTAGTCAAATCATGCATTTGCATGAATGTCAAGGAATCATGTAATAATGCATCAGGCTTCTCTTCTGACCTTCCAGCCTCTGTTGTCAAACTTCTGCTGCAATCAATATTCAACAACACTGGAGGAGAAGTTGTAATCAACAAAGACGGCAAACGTGAGTTGTTGGGCACTCCCACTGAGACTGCATTATTAGAGTTTGGTCTCTCACTTGGTGGGGATTTTCAGGCTGAGAGACAGGCAGGTAAACTTATTAAAATTGAGCCGTTCAACTCTTTGAAAAAGCGGATGGGTATTGTCCTACAATTTCCTGAAGGTGGTTTCCGTGCTCACACTAAAGGGGCTTCGGAAATAGTATTGGCTGCCTGTGACAAGGTGATCAACTCGAGTGGTGAGGTTGTTCCTTTAGATGAAGCTTCCATCAAGCATCTCAATGTTATTATCAATCAATTTGCTGGCGAAGCTCTCCGAACACTTTGTCTTGCCTATATGGAACTGGAAAATGGATTCTCTGTCAATGATTCTATTCCAGTTTCTGGTTATACCTGTATAGGGATTGTGGGTATTAAAGATCCTGTTCGTCCTGGTGTTAAGGAGTCTGTTGCAGTTTGTCGTTCAGCTGGTATTACTGTACGAATGGTTACTGGTGACAATATCAATACTGCAAAAGCTATTGCTAGGGAATGTGGAATTCTCACCGATGATGGTATAGCCATTGAGGGTCCAGATTTCAGAGAGAAGAGTCAAGAGGAATTGCTTCAAATTATTCCCAAAATTCAGGTGATGGCTCGTTCTTCACCTCTAGATAAGCATACTCTGGTCAAGCATTTGCGGACCACCTTTGATGAAGTTGTTGCAGTTACTGGTGATGGGACAAATGATGCTCCTGCACTTCACGAAGCAGATATTGGATTAGCAATGGGCATCGCTGGAACTGAGGTTGCAAAAGAGAGTGCTGATGTGATCATTCTTGATGATAATTTCTCTACAATAGTGACTGTGGGAAAATGGGGTCGTTCCGTTTACATAAACATTCAAAAATTTGTGCAATTCCAGCTGACCGTTAACATAGTGGCGTTGATCGTAAACTTCTCTTCAGCTTGTTTGACAGGTAATGCTCCTCTTACTGCAGTCCAGCTCTTGTGGGTGAACATGATTATGGATACACTTGGAGCGCTGGCTCTGGCCACTGAGCCTCCAAATGATGAACTGATGAAGCGGCTACCTGTTGGGAGGAGAGGAAGTTTTATCAGCAATGTCATGTGGAGAAATATCATGGGCCAGTCCTTGTATCAGTTCTCAGTCATATGGTTTTTACAGGCCAAAGGAAAATCAGCATTCGATCTTGACGGCCCTGATTCAGATCTTACACTAAATACACTCATCTTCAATTCCTTTGTGTTCTGTCAGATCTTTAACGAAATAAGTTCGAGGGAGATGGACAAAATCGATGTGTTCAAAGGCATACTCAATAACTATGTGTTTGTTGCTGTCATTGGTTCCACCGTCATCTTCCAAATAATCATCATCGAATTCCTGGGAACATTTGCGAGCACAACCCCTCTGAATATGTCGCAGTGGCTCTTCAGCGTGGTGATTGGATTTCTAGGCATGCCAATTGCTGCTTTCTTGAAGACGATTGCAAGGAAGACTGTGCTCTTGCGTGCGCGGGGTTCAGTTGAAGGCCTATATAAATCAGTAGCCCCTTTCTATCCTCCTAACTTAGCAGTTTCCGTGGAGTCTTTGCTTCCGGAAATGGAAGCTTTGAGCAGAAATGCGCCAATTCCTTCACCCAAGTTTGAACCAGATACCGACAAAATTAAGCGAACGCTCCTTCAGAAGGGTGTTCATCCCACTCCCAAAGTCGTCCGCTCACTCCGCAAGAAAGAAATTCAGAAGCACAATCGCAAACTCAAGCGACTGGCCCAACGACAAGCCGATCAGTCGCCACCTCTTTCTGAGTCCCAAAAGCAACTAATCGCCGAGGAAACTCATTTTCTGACGTTGAGAAGCGAGTACAAGGAGTTTTCGAAGGCCATTGAGGCAAAACCAGCCGGTGGCTTGATGGTCGGAAGGCCTTGGGAGAGACTGGAAAGAGTTAACCTTAAAGAACTTACCGGTTTTAGAACGGGATACAATCGAGATAATCTGAAGAAGGAGAGTTTGAGAGAATTGAGGAAGCTGTTTGAGGCTCGTAAGCTCGAGGAATTGCAGTGGGCTTTGGACGACGATGTGGAACTGAAGGAAGAGTGGTTGGAGAGTGAAAATGGTCACTGTGACGCCGTGAAACGGAGGCGTGGCGACGGAGAGGTTATTCGCTTCCTTGTTGACAGGCTCAGTTCGAGACCAATTTCCATGAGAGATTGGAAATTCTCAAAGATGATGATACGGTCAGGATTGCAGTTTAATGAAGGCCAATTACTTAAAATTTTGGATGCCCTCGGTGCTAAGGGATGTTGGAAACAGGCCTTATCAGTGGTTGAATGGGTGTACAATCTTAAAAGCCACAGTCATTTTAAAAGCAGGTTTGTCTATACAAAGCTTTTAGCTGTTCTTGGGATGGCGAGGAAACCTCAGGAAGCCCTTAAGATATTTAATTTGATGAGGGGAGATGGCCAGATATATCCTGATATGGCTGCATATCACAGTATAGCTGTTACGCTGGGTCAAGCTGGTCTCTTGAAACAATTGCTGAAAGTTATTGAATGCATGAGGCAGCAACCGTCTAAAAAAGTTAGAAACAAGTGCCGCAAATCTTGGGATCCTGCAGTTGAACCCGACCTTGTTATATATAATGCTATTTTGAACGCATGCATTCCCACCCTCGAGTGGAAAGGTGTCTACTGGGTCTTTACACAATTGAGAAAGAGTGGTTTGAGACCTAATGGAGCAACATATGGGCTTTCTATGGAGGTTATGCTGAAATCTGGAAAGTATGAGCAACTTCACAAGCTTTTTACAAAAATGAAGAAGAGTGGAGAAACTCTAAAGGCAAACACTTACAGAGTTCTTGTCAAAGCTTTTTGGGAGGAGGGAAATGTCAATGGAGCTATTGAGGCAGTCAGGGATATGGAACAAAGAGGAGTAGTTGGATCTGCCAGTGTCTATTATGAACTAGCTTGTTGTCTATGCTACAATGGGAGGTGGCAAGATGCATTAGTAGAGGTGGAAAAATTGAAAACACTATCACACATGAAACCTTTGGTGGTGACCTTCACTGGCATGATCTTATCTTCCTTCGATGGTGGACATATTGATGATTGTATATCTATCTTCGAGTACATGAAGCAAAAATGTGTGCCAAATATAGGAACCATAAATGCCATGCTTAAAGTTTATGGCCGAGATGATATGTTTTCTAAAGCTAAAGATTTATTTGAAGAAATAAAGAGAAAAGCTGGTCGTTCCTCCAACAGTAGTGCTGTTCCTTCTTTAGTCCCAGATGAATATACGTATGGCTCAATGCTTGAGGCAGCTGCTAGTGCACTCCAATGGGAATATTTTGAGAATGTATACAGGGAAATGGCTCTGTCGGGATATCGGCTTGATCATAGTAAACATGCAATGCTACTTGTGGAAGCATCCAGAGCTGGGAAGTGGTATCTTTTAGATCATGCATTTGACACAATCTTGGAAGATGGACAGATTCCCCATCCACTATTATTCACAGAAATGATATTGCAACTTACAACTCAAGGTAACTATGAGCAGGCTGTCATCTTAGTTAGAACCATGGGTTATGCTCCATTTCAAGTGAGTGAAAGGCAATGGACAGAACTTTTTGAAAGGAACATGGACAGAATTTGTTGGAATAGCTTGAAAAAACTGTCAGATGCTCTTAGCGACTGCGATGCATCAGAAGCCACGGTCTTGAACTTGTCAAGGTCACTGCAGTCTCTTTGCAAACTTGACATACCAGAGAACACCTCCCAGTCTGTTGCTTCTGACCATGATGCAACAGATGGATTACAACTTCCTGGTTCCGAAATCATGGAGAATATGGAACTTCACCCAGATCGCGTCTCTGATTGTTGTGACAAATCATTGGATATTACTCCTGTTAACAGCTATGCAAGCTTGAACATGAAGGTCAAGAGTGACTCAAAGATGTCCTCTTGGTCACCGAGTATTTCTGAAGGTGTTTTAGGGACTGACGAATTTTCGGATCGTTCCAACAATGAGCTCTCAACTTTTGATTTGTGTGATGACAACGAAGACGATGAGGAAGAACTTAACACGTTGCTTGATGAATTTGATGATTCTTATGATTCAAGCTTACCTTCTGTCAATGAAATACTGAAAACCTGGAAAGAGGAGAGGAAAACTGATGGGTTATTTCTCCACCCTTTGAATTAG 5751 43.19 MERFLEENFGGVKPKNSSEEVLQRWRELCGVVKNPKRRFRFTANLSKRGEAAAMRQNNQEKLRIAVLVSKAAFQFIQGVQPSDYTVPEEVKAAGFHICADELGSIVEGHDPKKFKYHGGVEGIAGKLCTSTTNGLNADADALNRRQEIYGVNKFAESEQRSFLVFVWEALQDMTLMILGLCAFVSLVVGIITEGWPHGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRNGYRQKMSIYDLLPGDIVHLSIGDQVPADGLFVSGFSVLIDESSLTGESEPVMVSAENPYLLSGTKVQDGSCKMMVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAIITFAVLVQGLLSRKIREGTHWSWSGDDALEILEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATSICSDKTGTITTNRMTVVKSCICMNVKESCNNASGFSSDLPASVVKLLLQSIFNNTGGEVVINKDGKRELLGTPTETALLEFGLSLGGDFQAERQAGKLIKIEPFNSLKKRMGIVLQFPEGGFRAHTKGASEIVLAACDKVINSSGEVVPLDEASIKHLNVIINQFAGEALRTLCLAYMELENGFSVNDSIPVSGYTCIGIVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPDFREKSQEELLQIIPKIQVMARSSPLDKHTLVKHLRTTFDEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVGKWGRSVYINIQKFVQFQLTVNIVALIVNFSSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPNDELMKRLPVGRRGSFISNVMWRNIMGQSLYQFSVIWFLQAKGKSAFDLDGPDSDLTLNTLIFNSFVFCQIFNEISSREMDKIDVFKGILNNYVFVAVIGSTVIFQIIIIEFLGTFASTTPLNMSQWLFSVVIGFLGMPIAAFLKTIARKTVLLRARGSVEGLYKSVAPFYPPNLAVSVESLLPEMEALSRNAPIPSPKFEPDTDKIKRTLLQKGVHPTPKVVRSLRKKEIQKHNRKLKRLAQRQADQSPPLSESQKQLIAEETHFLTLRSEYKEFSKAIEAKPAGGLMVGRPWERLERVNLKELTGFRTGYNRDNLKKESLRELRKLFEARKLEELQWALDDDVELKEEWLESENGHCDAVKRRRGDGEVIRFLVDRLSSRPISMRDWKFSKMMIRSGLQFNEGQLLKILDALGAKGCWKQALSVVEWVYNLKSHSHFKSRFVYTKLLAVLGMARKPQEALKIFNLMRGDGQIYPDMAAYHSIAVTLGQAGLLKQLLKVIECMRQQPSKKVRNKCRKSWDPAVEPDLVIYNAILNACIPTLEWKGVYWVFTQLRKSGLRPNGATYGLSMEVMLKSGKYEQLHKLFTKMKKSGETLKANTYRVLVKAFWEEGNVNGAIEAVRDMEQRGVVGSASVYYELACCLCYNGRWQDALVEVEKLKTLSHMKPLVVTFTGMILSSFDGGHIDDCISIFEYMKQKCVPNIGTINAMLKVYGRDDMFSKAKDLFEEIKRKAGRSSNSSAVPSLVPDEYTYGSMLEAAASALQWEYFENVYREMALSGYRLDHSKHAMLLVEASRAGKWYLLDHAFDTILEDGQIPHPLLFTEMILQLTTQGNYEQAVILVRTMGYAPFQVSERQWTELFERNMDRICWNSLKKLSDALSDCDASEATVLNLSRSLQSLCKLDIPENTSQSVASDHDATDGLQLPGSEIMENMELHPDRVSDCCDKSLDITPVNSYASLNMKVKSDSKMSSWSPSISEGVLGTDEFSDRSNNELSTFDLCDDNEDDEEELNTLLDEFDDSYDSSLPSVNEILKTWKEERKTDGLFLHPLN 1916
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 30587493 30598039 + CcPI632755_04g015180.1 Cco04g1518 176743
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1518 1916 PANTHER CATION TRANSPORTING ATPASE 77 1013 - GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER)
Cco04g1518 1916 NCBIfam calcium-translocating P-type ATPase, PMCA-type 114 1012 IPR006408 GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro)
Cco04g1518 1916 FunFam Calcium-transporting ATPase 17 77 - -
Cco04g1518 1916 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1567 1601 IPR002885 -
Cco04g1518 1916 SUPERFAMILY HAD-like 452 858 IPR036412 -
Cco04g1518 1916 NCBIfam pentatricopeptide repeat 1570 1597 IPR002885 -
Cco04g1518 1916 Gene3D - 140 336 - -
Cco04g1518 1916 Gene3D - 168 1014 - -
Cco04g1518 1916 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1392 1426 IPR002885 -
Cco04g1518 1916 Pfam PPR repeat 1309 1337 IPR002885 -
Cco04g1518 1916 Pfam PPR repeat 1465 1494 IPR002885 -
Cco04g1518 1916 Coils Coil 1093 1113 - -
Cco04g1518 1916 PRINTS P-type cation-transporting ATPase superfamily signature 753 772 - -
Cco04g1518 1916 PRINTS P-type cation-transporting ATPase superfamily signature 777 789 - -
Cco04g1518 1916 PRINTS P-type cation-transporting ATPase superfamily signature 672 682 - -
Cco04g1518 1916 PRINTS P-type cation-transporting ATPase superfamily signature 284 298 - -
Cco04g1518 1916 PRINTS P-type cation-transporting ATPase superfamily signature 650 661 - -
Cco04g1518 1916 PRINTS P-type cation-transporting ATPase superfamily signature 453 467 - -
Cco04g1518 1916 PRINTS H+-transporting ATPase (proton pump) signature 785 810 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco04g1518 1916 PRINTS H+-transporting ATPase (proton pump) signature 753 769 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco04g1518 1916 PRINTS H+-transporting ATPase (proton pump) signature 609 627 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco04g1518 1916 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 50 IPR024750 GO:0005516(InterPro)
Cco04g1518 1916 FunFam Calcium-transporting ATPase 216 336 - -
Cco04g1518 1916 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1462 1496 IPR002885 -
Cco04g1518 1916 ProSitePatterns E1-E2 ATPases phosphorylation site. 455 461 IPR018303 -
Cco04g1518 1916 FunFam Calcium-transporting ATPase 646 798 - -
Cco04g1518 1916 Pfam Cation transporter/ATPase, N-terminus 116 185 IPR004014 -
Cco04g1518 1916 FunFam Predicted protein 1528 1661 - -
Cco04g1518 1916 SFLD p-type atpase 435 805 IPR044492 -
Cco04g1518 1916 SFLD C1.7: P-type atpase like 435 805 - -
Cco04g1518 1916 Pfam Cation transport ATPase (P-type) 513 591 - -
Cco04g1518 1916 Pfam Pentatricopeptide repeat domain 1389 1435 IPR002885 -
Cco04g1518 1916 Pfam Pentatricopeptide repeat domain 1531 1579 IPR002885 -
Cco04g1518 1916 FunFam Calcium-transporting ATPase 770 1016 - -
Cco04g1518 1916 SUPERFAMILY Calcium ATPase, transduction domain A 239 333 IPR008250 -
Cco04g1518 1916 Gene3D - 17 77 - -
Cco04g1518 1916 CDD P-type_ATPase_Ca_PMCA-like 142 886 - -
Cco04g1518 1916 Gene3D - 463 657 IPR023299 GO:0000166(InterPro)
Cco04g1518 1916 NCBIfam HAD-IC family P-type ATPase 720 834 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco04g1518 1916 NCBIfam HAD-IC family P-type ATPase 205 475 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco04g1518 1916 MobiDBLite consensus disorder prediction 1099 1122 - -
Cco04g1518 1916 Pfam Cation transporting ATPase, C-terminus 838 1011 IPR006068 -
Cco04g1518 1916 Gene3D - 450 798 IPR023214 -
Cco04g1518 1916 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 459 662 IPR023299 GO:0000166(InterPro)
Cco04g1518 1916 Pfam E1-E2 ATPase 236 432 - -
Cco04g1518 1916 Pfam haloacid dehalogenase-like hydrolase 647 767 - -
Cco04g1518 1916 Gene3D Tetratricopeptide repeat domain 1241 1407 IPR011990 GO:0005515(InterPro)
Cco04g1518 1916 Gene3D Tetratricopeptide repeat domain 1408 1517 IPR011990 GO:0005515(InterPro)
Cco04g1518 1916 FunFam Calcium-transporting ATPase 463 657 - -
Cco04g1518 1916 Gene3D Tetratricopeptide repeat domain 1609 1845 IPR011990 GO:0005515(InterPro)
Cco04g1518 1916 Gene3D Tetratricopeptide repeat domain 1523 1608 IPR011990 GO:0005515(InterPro)
Cco04g1518 1916 SUPERFAMILY Calcium ATPase, transmembrane domain M 116 1015 IPR023298 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1518 Cco-Chr4:30587493 Cco10g1561 Cco-Chr10:28801858 0.00E+00 dispersed
Cco01g0932 Cco-Chr1:10512501 Cco04g1518 Cco-Chr4:30587493 3.00E-95 transposed
Cco02g1330 Cco-Chr2:25164598 Cco04g1518 Cco-Chr4:30587493 9.30E-22 wgd
Cco04g1518 Cco-Chr4:30587493 Cco05g2319 Cco-Chr5:31780376 0.00E+00 wgd
Cco04g1518 Cco-Chr4:30587493 Cco08g1842 Cco-Chr8:29407488 6.20E-79 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1518 K01537 - csv:101212315 1910.19