Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g1540 | ATGAGCAGTAGAGTAATAGGGAGAAACGGCGCCGTATGCGAACATGGTGGATTTTATTCACCATTATCTGCCATGCCACTCAAGTCAGATGGCTCAATTTGTTCAATGGAAGCTCTCAGCAGGCAGCATCCACAAGTGGTGAGTAGCTCTACTCCAAAACTAGAGGATTTCTTTGGTGGTGCAACTATGGGGTCCCATCACTATGAAAGCAATGACAGGGAAGCTATGGCTCTCAGCCTAGACAGCATATTTTGCCATCAAAACCCAACTCATGAGCCCAACAACCAAACCTTTGCACATTTCTCATCCTTAAGGAGCCGTGAACTGATGCTTCAAGACTCGAAGGCAATCCTGCCTGATGGGTGCAATCTGCAGCAGCAGCAGCAACACCATCCAGCAGTAGCCCAGAGTGATATTTCTGGTATGAAGAATTGGGCTGTTCCTAGAAACTATGCTGCCACTAACAATGGTTCGTTCGAGCAGAAGATGGTGAATTGCATGAGTGAAAATAGCGGTGAATCTGGTCCCATTAATGCCATGACTTATGGAGATTTACAGTCATTGAGCTTGTCCATGACTATGAGCCCCAGCTCTCAGTCAAGCTGTGTCACAACCACACAGCATGTCTCACCTGCCATGGCTGACTGTTCTGCCATGGATACAAAGAAAAGAGGCCATGAGAAGGTTGATCAGAAGCAAATTGTTCATAGGAAGTCTTTAGATACCTTTGGACAGAGAACCTCACAGTATAGAGGGGTTACAAGGCACAGATGGACGGGTAGGTATGAAGCACATTTATGGGACAACAGTTGCAAGAAAGAAGGTCAAAGCAGGAAGGGAAGGCAAGTGTACCTTGGAGGTTATGATATGGAAGAAAAAGCCGCTAGAGCTTATGATCTTGCTGCACTCAAGTATTGGGGACCCTCCACCCACATTAACTTTCCTTTGGAAAACTATCAGAAAGAATTAGAGGAAATGAAAAACATGAGCAGGCAGGAATATGTCGCTCACCTGAGAAGAAGAAGCAGCGGGTTCTCAAGAGGGGCCTCGATATACAGAGGTGTAACAAGGCATCATCAACATGGAAGATGGCAGGCTCGGATTGGCCGAGTTGCTGGTAACAAAGATCTGTATCTTGGGACATTCAGTACTCAAGAGGAAGCTGCCGAGGCTTATGACATAGCAGCCATAAAATTTCGAGGAATGAATGCCGTTACTAATTTCGATATCACGAGGTATGACGTGGAGCGGATTATTGCAAGCAATACCCTCCTTAGTGGCGATCTAGCTAAGAGAAAGCAGCAGCCAGAGTTTGATAATGAATCACTTAGACGAAGCCCTACTCACAACGGCAATTCAGAAGCTATGCCTCTGCCCTCACAGAATAGCAGTCAAAGTGAATCAGACTGGAAAATGGCTCTTTATCAGTCATCACAGCAGCTCGTTCCGAAGCAACGAATGTTGTCTGCAATAAACGATGATGGATCACAAATTGGAGTCGAAGATTCGGCCAGAATGGGAGCTCATTTCTCCAATGCATCTTCAATGGTGACTAGCTGCAGCTTGAGCAGCTCAAGGGAGGAGAGTCCAGACAAGACAAGCCTTTCGATGGTGTTTGGAATGCCTCAATCGACATCTAAGCCGTTTGCTGCCTCGGCTAGTAATATGAACACCTCCTGGATTGCATCTGCCCAACAGTTAAGGGCAGCAAATTGTATGAGCCAGTTGCCAGTTTTTGCTGCCTGGACTGATACTTAA | 1758 | 46.25 | MSSRVIGRNGAVCEHGGFYSPLSAMPLKSDGSICSMEALSRQHPQVVSSSTPKLEDFFGGATMGSHHYESNDREAMALSLDSIFCHQNPTHEPNNQTFAHFSSLRSRELMLQDSKAILPDGCNLQQQQQHHPAVAQSDISGMKNWAVPRNYAATNNGSFEQKMVNCMSENSGESGPINAMTYGDLQSLSLSMTMSPSSQSSCVTTTQHVSPAMADCSAMDTKKRGHEKVDQKQIVHRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQKELEEMKNMSRQEYVAHLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGMNAVTNFDITRYDVERIIASNTLLSGDLAKRKQQPEFDNESLRRSPTHNGNSEAMPLPSQNSSQSESDWKMALYQSSQQLVPKQRMLSAINDDGSQIGVEDSARMGAHFSNASSMVTSCSLSSSREESPDKTSLSMVFGMPQSTSKPFAASASNMNTSWIASAQQLRAANCMSQLPVFAAWTDT | 585 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 30761904 | 30765976 | + | CcPI632755_04g015400.1 | Cco04g1540 | 176765 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g1540 | 585 | SMART | rav1_2 | 351 | 415 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco04g1540 | 585 | SMART | rav1_2 | 249 | 321 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco04g1540 | 585 | ProSiteProfiles | AP2/ERF domain profile. | 351 | 409 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco04g1540 | 585 | Coils | Coil | 316 | 336 | - | - | |
Cco04g1540 | 585 | PRINTS | Ethylene responsive element binding protein signature | 250 | 261 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco04g1540 | 585 | PRINTS | Ethylene responsive element binding protein signature | 391 | 411 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco04g1540 | 585 | FunFam | AP2-like ethylene-responsive transcription factor | 350 | 411 | - | - | |
Cco04g1540 | 585 | SUPERFAMILY | DNA-binding domain | 248 | 317 | IPR016177 | GO:0003677(InterPro) | |
Cco04g1540 | 585 | CDD | AP2 | 248 | 315 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco04g1540 | 585 | Gene3D | AP2/ERF domain | 248 | 317 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco04g1540 | 585 | Gene3D | AP2/ERF domain | 351 | 411 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco04g1540 | 585 | FunFam | AP2-like ethylene-responsive transcription factor ANT | 248 | 317 | - | - | |
Cco04g1540 | 585 | CDD | AP2 | 350 | 411 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco04g1540 | 585 | Pfam | AP2 domain | 352 | 402 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco04g1540 | 585 | Pfam | AP2 domain | 249 | 307 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco04g1540 | 585 | MobiDBLite | consensus disorder prediction | 430 | 468 | - | - | |
Cco04g1540 | 585 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 186 | 477 | - | - | |
Cco04g1540 | 585 | MobiDBLite | consensus disorder prediction | 445 | 468 | - | - | |
Cco04g1540 | 585 | ProSiteProfiles | AP2/ERF domain profile. | 249 | 315 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco04g1540 | 585 | SUPERFAMILY | DNA-binding domain | 350 | 410 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g1540 | Cco-Chr4:30761904 | Cco05g2921 | Cco-Chr5:36731248 | 6.00E-134 | dispersed | |
Cco02g2489 | Cco-Chr2:37230020 | Cco04g1540 | Cco-Chr4:30761904 | 4.90E-91 | transposed | |
Cco06g1537 | Cco-Chr6:25868736 | Cco04g1540 | Cco-Chr4:30761904 | 7.70E-95 | transposed | |
Cco04g1540 | Cco-Chr4:30761904 | Cco08g1852 | Cco-Chr8:29537290 | 1.40E-154 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59087 | PF00847 | AP2 | 1.10E-13 | CL0081 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g1540 | K09285 | - | csv:101203323 | 1054.66 |