Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1540 ATGAGCAGTAGAGTAATAGGGAGAAACGGCGCCGTATGCGAACATGGTGGATTTTATTCACCATTATCTGCCATGCCACTCAAGTCAGATGGCTCAATTTGTTCAATGGAAGCTCTCAGCAGGCAGCATCCACAAGTGGTGAGTAGCTCTACTCCAAAACTAGAGGATTTCTTTGGTGGTGCAACTATGGGGTCCCATCACTATGAAAGCAATGACAGGGAAGCTATGGCTCTCAGCCTAGACAGCATATTTTGCCATCAAAACCCAACTCATGAGCCCAACAACCAAACCTTTGCACATTTCTCATCCTTAAGGAGCCGTGAACTGATGCTTCAAGACTCGAAGGCAATCCTGCCTGATGGGTGCAATCTGCAGCAGCAGCAGCAACACCATCCAGCAGTAGCCCAGAGTGATATTTCTGGTATGAAGAATTGGGCTGTTCCTAGAAACTATGCTGCCACTAACAATGGTTCGTTCGAGCAGAAGATGGTGAATTGCATGAGTGAAAATAGCGGTGAATCTGGTCCCATTAATGCCATGACTTATGGAGATTTACAGTCATTGAGCTTGTCCATGACTATGAGCCCCAGCTCTCAGTCAAGCTGTGTCACAACCACACAGCATGTCTCACCTGCCATGGCTGACTGTTCTGCCATGGATACAAAGAAAAGAGGCCATGAGAAGGTTGATCAGAAGCAAATTGTTCATAGGAAGTCTTTAGATACCTTTGGACAGAGAACCTCACAGTATAGAGGGGTTACAAGGCACAGATGGACGGGTAGGTATGAAGCACATTTATGGGACAACAGTTGCAAGAAAGAAGGTCAAAGCAGGAAGGGAAGGCAAGTGTACCTTGGAGGTTATGATATGGAAGAAAAAGCCGCTAGAGCTTATGATCTTGCTGCACTCAAGTATTGGGGACCCTCCACCCACATTAACTTTCCTTTGGAAAACTATCAGAAAGAATTAGAGGAAATGAAAAACATGAGCAGGCAGGAATATGTCGCTCACCTGAGAAGAAGAAGCAGCGGGTTCTCAAGAGGGGCCTCGATATACAGAGGTGTAACAAGGCATCATCAACATGGAAGATGGCAGGCTCGGATTGGCCGAGTTGCTGGTAACAAAGATCTGTATCTTGGGACATTCAGTACTCAAGAGGAAGCTGCCGAGGCTTATGACATAGCAGCCATAAAATTTCGAGGAATGAATGCCGTTACTAATTTCGATATCACGAGGTATGACGTGGAGCGGATTATTGCAAGCAATACCCTCCTTAGTGGCGATCTAGCTAAGAGAAAGCAGCAGCCAGAGTTTGATAATGAATCACTTAGACGAAGCCCTACTCACAACGGCAATTCAGAAGCTATGCCTCTGCCCTCACAGAATAGCAGTCAAAGTGAATCAGACTGGAAAATGGCTCTTTATCAGTCATCACAGCAGCTCGTTCCGAAGCAACGAATGTTGTCTGCAATAAACGATGATGGATCACAAATTGGAGTCGAAGATTCGGCCAGAATGGGAGCTCATTTCTCCAATGCATCTTCAATGGTGACTAGCTGCAGCTTGAGCAGCTCAAGGGAGGAGAGTCCAGACAAGACAAGCCTTTCGATGGTGTTTGGAATGCCTCAATCGACATCTAAGCCGTTTGCTGCCTCGGCTAGTAATATGAACACCTCCTGGATTGCATCTGCCCAACAGTTAAGGGCAGCAAATTGTATGAGCCAGTTGCCAGTTTTTGCTGCCTGGACTGATACTTAA 1758 46.25 MSSRVIGRNGAVCEHGGFYSPLSAMPLKSDGSICSMEALSRQHPQVVSSSTPKLEDFFGGATMGSHHYESNDREAMALSLDSIFCHQNPTHEPNNQTFAHFSSLRSRELMLQDSKAILPDGCNLQQQQQHHPAVAQSDISGMKNWAVPRNYAATNNGSFEQKMVNCMSENSGESGPINAMTYGDLQSLSLSMTMSPSSQSSCVTTTQHVSPAMADCSAMDTKKRGHEKVDQKQIVHRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQKELEEMKNMSRQEYVAHLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGMNAVTNFDITRYDVERIIASNTLLSGDLAKRKQQPEFDNESLRRSPTHNGNSEAMPLPSQNSSQSESDWKMALYQSSQQLVPKQRMLSAINDDGSQIGVEDSARMGAHFSNASSMVTSCSLSSSREESPDKTSLSMVFGMPQSTSKPFAASASNMNTSWIASAQQLRAANCMSQLPVFAAWTDT 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30761904 30765976 + CcPI632755_04g015400.1 Cco04g1540 176765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1540 585 SMART rav1_2 351 415 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1540 585 SMART rav1_2 249 321 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1540 585 ProSiteProfiles AP2/ERF domain profile. 351 409 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1540 585 Coils Coil 316 336 - -
Cco04g1540 585 PRINTS Ethylene responsive element binding protein signature 250 261 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1540 585 PRINTS Ethylene responsive element binding protein signature 391 411 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1540 585 FunFam AP2-like ethylene-responsive transcription factor 350 411 - -
Cco04g1540 585 SUPERFAMILY DNA-binding domain 248 317 IPR016177 GO:0003677(InterPro)
Cco04g1540 585 CDD AP2 248 315 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1540 585 Gene3D AP2/ERF domain 248 317 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1540 585 Gene3D AP2/ERF domain 351 411 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1540 585 FunFam AP2-like ethylene-responsive transcription factor ANT 248 317 - -
Cco04g1540 585 CDD AP2 350 411 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1540 585 Pfam AP2 domain 352 402 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1540 585 Pfam AP2 domain 249 307 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1540 585 MobiDBLite consensus disorder prediction 430 468 - -
Cco04g1540 585 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 186 477 - -
Cco04g1540 585 MobiDBLite consensus disorder prediction 445 468 - -
Cco04g1540 585 ProSiteProfiles AP2/ERF domain profile. 249 315 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1540 585 SUPERFAMILY DNA-binding domain 350 410 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1540 Cco-Chr4:30761904 Cco05g2921 Cco-Chr5:36731248 6.00E-134 dispersed
Cco02g2489 Cco-Chr2:37230020 Cco04g1540 Cco-Chr4:30761904 4.90E-91 transposed
Cco06g1537 Cco-Chr6:25868736 Cco04g1540 Cco-Chr4:30761904 7.70E-95 transposed
Cco04g1540 Cco-Chr4:30761904 Cco08g1852 Cco-Chr8:29537290 1.40E-154 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59087 PF00847 AP2 1.10E-13 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1540 K09285 - csv:101203323 1054.66