Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1550 ATGGGTTTTGATGATCTTTCTAATACAGGCCTTCTACTGGGTTTGGGATTAAATCTTCCCTCTAATCCTCCCCATCTTTCTCAAAAACCCAAGAAGCCCCTGGATTTGCTCTGTTTTCCCGCCCCTGAATCCGAGCCTTCCTTAACTTTGGGGCTTTCCACCGTCGACACTTACCCATCTGAAACCGCGGATTTGTCACGGCAACCATCTCCTCACAGTGCGATTTCTTCTTTCTCTGGCGGTAAGGTCAAGCGTGAAAGAGATGTTTCCGGTGGTGAAGATATTGAAGAAGAGAAAGCTTCTTCTCGAGTTAGCGACGAAGAAGAAGATGGTTCTAATGCTAGAAAAAAACTTAGGCTAACTAAAGAACAATCTGCCCTTTTGGAAGAGAGCTTCAAACTTCACAGTACTCTCAACCCTAAGCAAAAGCAAGCCTTAGCTAGAGAGTTAAATCTCCTGCCTCGACAAGTTGAAGTTTGGTTCCAGAATAGGAGAGCCAGGACAAAGCTAAAGCAAACAGAAGTGGATTGCGAGTTTCTAAAGAGATGCTGCGAAACGCTAACGGACGAAAACAGGAGGCTGCAGAAAGAGCTGCAAGAACTGAAAGCCCTGAAACTAGCGCAGCCTCTGTTCATGCAAATGCCGGCGGCGACACTCACTATGTGCCCGTCTTGCGAGCGGATCGGCGGTGGTGCCGCCACCGTTAACGGCGACGGCAATTCCAAGGGCCCATTTTCGATGGCCTCCAACCCCCGGTTTTACAAAGCCTTCACCAAGCCCTCCGCTGCTTGCTAA 795 48.81 MGFDDLSNTGLLLGLGLNLPSNPPHLSQKPKKPLDLLCFPAPESEPSLTLGLSTVDTYPSETADLSRQPSPHSAISSFSGGKVKRERDVSGGEDIEEEKASSRVSDEEEDGSNARKKLRLTKEQSALLEESFKLHSTLNPKQKQALARELNLLPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTDENRRLQKELQELKALKLAQPLFMQMPAATLTMCPSCERIGGGAATVNGDGNSKGPFSMASNPRFYKAFTKPSAAC 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30894023 30895013 + CcPI632755_04g015500.1 Cco04g1550 176775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1550 264 SMART halz 171 214 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco04g1550 264 MobiDBLite consensus disorder prediction 81 118 - -
Cco04g1550 264 FunFam Homeobox-leucine zipper protein 18 100 176 - -
Cco04g1550 264 MobiDBLite consensus disorder prediction 12 118 - -
Cco04g1550 264 ProSitePatterns 'Homeobox' domain signature. 146 169 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cco04g1550 264 ProSiteProfiles 'Homeobox' domain profile. 111 171 IPR001356 GO:0003677(InterPro)
Cco04g1550 264 SUPERFAMILY Homeodomain-like 106 172 IPR009057 -
Cco04g1550 264 Pfam Homeobox associated leucine zipper 171 205 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco04g1550 264 CDD homeodomain 115 172 IPR001356 GO:0003677(InterPro)
Cco04g1550 264 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 10 240 IPR050762 -
Cco04g1550 264 MobiDBLite consensus disorder prediction 47 77 - -
Cco04g1550 264 Coils Coil 177 207 - -
Cco04g1550 264 Gene3D - 107 176 - -
Cco04g1550 264 SMART HOX_1 113 175 IPR001356 GO:0003677(InterPro)
Cco04g1550 264 Pfam Homeodomain 115 169 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1550 Cco-Chr4:30894023 Cco10g0785 Cco-Chr10:14746659 5.70E-76 dispersed
Cco04g1550 Cco-Chr4:30894023 Cco09g0363 Cco-Chr9:3298066 1.10E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59089 PF00046 Homeodomain 1.00E-15 CL0123 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1550 K09338 - csv:101218782 462.996