Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1559 ATGTGGTTTCTTCTTGTTTTTGTGCTTCTTCAACTTCACTTTTCCCCTTCCTTCTCTGTCTTCCTACCCGAATCCCAAGCCCTTCTCTCTCTCAAATCCTCCATTTCTGACGACCCTCGTTCTTCTCTCTCCTCCTGGAACGCCGTCGCCGCCCACTGTACCTGGTTCGGCGTCACATGCGACGCCCGCCGCCACGTCGTTGCCCTCCACCTCTCTTCCCTTGACCTCGCCGGCACTATTTCCCCTGACCTTGCGTCTCTTCGCTTTCTCACTAATGTTTCCTTCGGCCTCAACAAATTTTCCGGCGGAATCCCACCGGAGATTGCCTCCATTTCTTCTCTCCAGTATCTTAATCTCTCTAGTAACGTCCTCAATGGGTCGATTCCTCGCGAGTTTTCGCAGCTCAAAAACTTACAGGTTCTTGATGTTTATAACAATAACCTGACCGGTGATTTTCCCAGAGTGGTCACTGAAATGACCAACCTCCGCCATTTGCACCTTGGGGGAAATTTCTTCACCGGTCGGATTCCTCCGGAGGTCGGACGGTTGCAGTTCTTGGAGTTTTTGGCGATTCACGGCAATGACCTTGAAGGTCCAATACCGCCGGCGATCGGAACCTTGACGAAGCTTCGGGAACTTTACATTGGTTACTACAACATCTTCGTCGGTGGAATACCGGCGACGATAGGGAATTTGTCGGAGTTAGTTCGGTTGGATGCCGCGAGCTGTGGGTTGACCGGAAAGTTTCCGCCGGAGCTGGGAAAGTTGCAGAAGCTCACTGAACTGTACCTTCAACAAAATGCTCTGTCTGGACCTTTGCTGGAGCTAGGAGGGTTGAAGAGCATAGAAGAGTTGGATATATCATGCAATATGCTTGTTGGTGAAATACCCATCTCTTTTGCAGAGTTCAAGAACTTGAGGCTGTTGCAACTTTTCGACAACAAGCTCTCCGGAGAGATTCCGGGATTCATGGGCGACCTCCCAAAGCTGGAGATATTGCAATTATGGAACAACAATTTCACAGGTTCGATCCCTCGAAATTTGGGGAAGAACGGAATGCTTCGGACTCTCGACCTTGCTTTCAACCACTTGACAGGTACGATTCCTCCTGAAATCTGCCATGGGAATAAGCTTGAAGTTTTGATCGCCATGGGCAATTCCTTCTCTGGTTCCATCCCAGAATCCTTGGGGAATTGTATTTCACTTAAGCGTATACTTCTGTGGGGAAACGCTCTTAATGGATCAATTCCAAAGAGGCTTTTGAGTTTGCCAAATCTCACTCAAGTTGATTTGCAAGACAATTTTCTCTCCGGAGAATTTCCCATTACCAATTCAGTCTCGGTTAACCTTCTTCAGATAAGTTTATCTAATAATATGCTCTCTGGATCCTTGCCACCCACCATCGGCAGCCTTGTGGCCGTCCAGAAGCTTCTTCTTGACCGGAATAAGTTTTCTGGTCAGATTCCTTCAAATATTGGGAGATTACAGCAACTATCTCGGATAAATTTCAGCCAGAATAAGTTCTCTGGTACAATTGTGCCAGAGATAAGTGAGTGTAAGCACTTAATATTTCTTGATCTTAGTGGAAATGAGCTTTCTGGTGAAATCCCCGACCATATTACCAACATGAAGTTATTGAATTATATGAATCTCTCAAGAAACCATTTAGTTGGGCCCATTCCTGCTTCAATAGTTAACATGCAGAGCTTAACCTCTGTGGACTTTTCATATAACAATCTCTCTGGTTTGGTTCTGGGAACTGGACAATTTGGTTACTTCAATTACACATCATTTTTAGGCAATCCTTATCTCTGTGGTGCATATTTGGGGCCTTGCAAAGATGGGGTTCTTGCTAGCAATCACCAAGAACATATGAAAGGCTCTCTCTCAACTCCTCTCAGGCTCCTGCTAGTTTTTGGTTTTTTTTTTGGTATAGTTGCACTGACAGTTGCATTGATCTTCAAAGTTCGGTGGTTTAAGAGAGCAAGGGAGTCTAGAGGATGGAGATTAACAGCCTTCCAACGGCTGGGTTTCTCGGTTGATGAGATCTTGGATTGCCTTAAGAAGGAAAATCTTATTGCAAAAGGAGGTTATGGCACAGTATATACAGGAGTGATGCCAAGTGGTGATCAGATCACTCTGAAAAGGCTTCCAAAGATGAGCAATGGGTGTTCTCGTGACCACGGATTCAATGCCGAGATTCAAGCTCTTGGGAGGATTCGACACCGTCACATTGTTAGATTATTGGGCCTCTGTTCAAACCATGAAACTAATCTTTTGGTATTTGAGTACATGCCTAATGGGAGTCTCTATGAGGTTCTCCATGGCAAGAAAGGAGGTCACTTGCTTTGGGATACAAGGTACAAGATAGCCATTGGAACTGCGAATGGACTCTGCTATCTTCACCACCATTGCTCGCCGCCCATTGTTCATCGAAATGTGAAATCAAACAACATTATGCTAGACACCAACTTTGAAGCTCAGATTGCCAATTCTGGGCTTGCAAAGTTCTTAGAAGATTCAAGGACATCGGATAAGTCAGCTACCGAGCCAGAGCATGCCGACACACAGAATGCCGATGAGAAGTGGGATGTATATAGCTTCGGTGTCATCCTATTGGAGCTCGTTAGCGGTAGGAATCCAGTCGGAGAACTAAGCGACAGTGTCGACATAGTTCAATGGGTTAGAAACATGTCAGTTTCAGAAAAGGAAGAAATACATAAAATCGTCGATCAAAGACTCTCCTCCGTCCCCCTTGATGAAGTGATGCACGTGCTCAATGTTGCCATGCTGTGCACTGAAGAAGAGGCTGCAAAGCGTCCCACAATGCGGGAAGTCGTCCAGATCTTAACCGAGCATCAGCAACAATCATTCTCGAAGGAGAATAGAGATACATAA 2898 45.76 MWFLLVFVLLQLHFSPSFSVFLPESQALLSLKSSISDDPRSSLSSWNAVAAHCTWFGVTCDARRHVVALHLSSLDLAGTISPDLASLRFLTNVSFGLNKFSGGIPPEIASISSLQYLNLSSNVLNGSIPREFSQLKNLQVLDVYNNNLTGDFPRVVTEMTNLRHLHLGGNFFTGRIPPEVGRLQFLEFLAIHGNDLEGPIPPAIGTLTKLRELYIGYYNIFVGGIPATIGNLSELVRLDAASCGLTGKFPPELGKLQKLTELYLQQNALSGPLLELGGLKSIEELDISCNMLVGEIPISFAEFKNLRLLQLFDNKLSGEIPGFMGDLPKLEILQLWNNNFTGSIPRNLGKNGMLRTLDLAFNHLTGTIPPEICHGNKLEVLIAMGNSFSGSIPESLGNCISLKRILLWGNALNGSIPKRLLSLPNLTQVDLQDNFLSGEFPITNSVSVNLLQISLSNNMLSGSLPPTIGSLVAVQKLLLDRNKFSGQIPSNIGRLQQLSRINFSQNKFSGTIVPEISECKHLIFLDLSGNELSGEIPDHITNMKLLNYMNLSRNHLVGPIPASIVNMQSLTSVDFSYNNLSGLVLGTGQFGYFNYTSFLGNPYLCGAYLGPCKDGVLASNHQEHMKGSLSTPLRLLLVFGFFFGIVALTVALIFKVRWFKRARESRGWRLTAFQRLGFSVDEILDCLKKENLIAKGGYGTVYTGVMPSGDQITLKRLPKMSNGCSRDHGFNAEIQALGRIRHRHIVRLLGLCSNHETNLLVFEYMPNGSLYEVLHGKKGGHLLWDTRYKIAIGTANGLCYLHHHCSPPIVHRNVKSNNIMLDTNFEAQIANSGLAKFLEDSRTSDKSATEPEHADTQNADEKWDVYSFGVILLELVSGRNPVGELSDSVDIVQWVRNMSVSEKEEIHKIVDQRLSSVPLDEVMHVLNVAMLCTEEEAAKRPTMREVVQILTEHQQQSFSKENRDT 965
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30948394 30951516 - CcPI632755_04g015590.1 Cco04g1559 176784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1559 965 Pfam Leucine rich repeat 113 170 IPR001611 GO:0005515(InterPro)
Cco04g1559 965 SUPERFAMILY Protein kinase-like (PK-like) 681 950 IPR011009 -
Cco04g1559 965 SMART LRR_sd22_2 207 234 - -
Cco04g1559 965 SMART LRR_sd22_2 135 164 - -
Cco04g1559 965 SMART LRR_sd22_2 256 287 - -
Cco04g1559 965 Pfam Leucine Rich Repeat 521 543 IPR001611 GO:0005515(InterPro)
Cco04g1559 965 Pfam Leucine Rich Repeat 354 374 IPR001611 GO:0005515(InterPro)
Cco04g1559 965 Pfam Leucine Rich Repeat 281 301 IPR001611 GO:0005515(InterPro)
Cco04g1559 965 Pfam Leucine Rich Repeat 377 399 IPR001611 GO:0005515(InterPro)
Cco04g1559 965 Pfam Leucine Rich Repeat 329 350 IPR001611 GO:0005515(InterPro)
Cco04g1559 965 Pfam Leucine Rich Repeat 449 471 IPR001611 GO:0005515(InterPro)
Cco04g1559 965 Pfam Protein tyrosine and serine/threonine kinase 688 950 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g1559 965 Pfam Leucine rich repeat N-terminal domain 24 61 IPR013210 -
Cco04g1559 965 SUPERFAMILY RNI-like 69 410 - -
Cco04g1559 965 SMART LRR_typ_2 111 135 IPR003591 -
Cco04g1559 965 SMART LRR_typ_2 471 495 IPR003591 -
Cco04g1559 965 SMART LRR_typ_2 352 375 IPR003591 -
Cco04g1559 965 SMART LRR_typ_2 256 279 IPR003591 -
Cco04g1559 965 SMART LRR_typ_2 567 590 IPR003591 -
Cco04g1559 965 SMART LRR_typ_2 327 351 IPR003591 -
Cco04g1559 965 SMART LRR_typ_2 159 183 IPR003591 -
Cco04g1559 965 Gene3D Phosphorylase Kinase; domain 1 659 764 - -
Cco04g1559 965 SUPERFAMILY L domain-like 353 611 - -
Cco04g1559 965 Gene3D Transferase(Phosphotransferase) domain 1 765 965 - -
Cco04g1559 965 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 8 953 IPR050647 -
Cco04g1559 965 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 22 177 - -
Cco04g1559 965 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 765 958 - -
Cco04g1559 965 Gene3D Ribonuclease Inhibitor 177 275 IPR032675 -
Cco04g1559 965 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 656 764 - -
Cco04g1559 965 Gene3D Ribonuclease Inhibitor 351 615 IPR032675 -
Cco04g1559 965 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 331 616 - -
Cco04g1559 965 Gene3D Ribonuclease Inhibitor 23 176 IPR032675 -
Cco04g1559 965 Gene3D Ribonuclease Inhibitor 276 350 IPR032675 -
Cco04g1559 965 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 178 273 - -
Cco04g1559 965 ProSiteProfiles Protein kinase domain profile. 687 958 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1559 Cco-Chr4:30948394 Cco10g0762 Cco-Chr10:12065143 8.40E-24 dispersed
Cco04g1559 Cco-Chr4:30948394 Cco04g1560 Cco-Chr4:30965638 1.70E-24 tandem
Cco04g2396 Cco-Chr4:37296958 Cco04g1559 Cco-Chr4:30948394 3.40E-91 transposed
Cco05g2059 Cco-Chr5:29632991 Cco04g1559 Cco-Chr4:30948394 4.70E-97 transposed
Cco10g0660 Cco-Chr10:9095725 Cco04g1559 Cco-Chr4:30948394 5.90E-97 transposed
Cco11g0381 Cco-Chr11:3796700 Cco04g1559 Cco-Chr4:30948394 5.30E-39 transposed
Cco11g1542 Cco-Chr11:28315101 Cco04g1559 Cco-Chr4:30948394 1.10E-60 wgd
Cco04g1559 Cco-Chr4:30948394 Cco08g1352 Cco-Chr8:25436011 2.40E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86764 PF07714 PK_Tyr_Ser-Thr 3.80E-37 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1559 - - - 0.0