Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1560 ATGCGTCTTCTTCTTCTTCTCCTTTGTCTTCTGCAACTCCACATTCATCACTCTCTTTCTGCTCGTGTTTCTGAGTACCGAGCTCTTCTCTCCCTCAAAACCTCCATTACCGGCGACCCCAAATCCTCACTCTCCTCATGGAACGCCTCCACCAGTCACTGTACTTGGTTTGGGGTCACCTGCGATCTTCGTCGCCATGTCACTGCCTTAGACCTCTCTGGTCTCGGCCTTTCTGGTTCCCTTTCCCCTGATGTTGCCTTTCTAAGATTTCTTACTAATCTTTCTCTTGCTGCCAATGACTTTTCCGGTCCAATCCCCCCGGAGATTTCTTCAGTCTCTTCGCTTCGGCTCCTTAACCTGTCTAACAATGTGTTCGATGGGTCGTTCCCTTCACGGCTTTCGCAGCTCCAGAATCTCCAGGTTCTTGACTTGTATAACAACAATATGACTGGAGATTTCCCTATTGTGGTCACGGAAATGTCGAGCCTCCGCCATTTGCATTTGGGTGGAAATTTCTTTTCCGGACGGATCCCGCCGGAAGTGGGTCGGATGCAGTCTTTGGAGTACTTGGCGGTTTCTGGTAACGAACTTAGCGGTCCGATACCGCCGGAGATCGGAAACCTCACGAACCTTCACGAGCTTTACATTGGCTACTTCAACGCCTACGACGGCGGTATTCCGGCTGAGATTGGGAATTTGTCGAAGTTGGTACGGTTGGACGCTGCGAACTGTGGACTGTCTGGCCGGATTCCCCCGGAGCTCGGAAAGCTGCAGAATCTCGATACTCTGTTTCTCCAAGTTAATGCTCTATCTGGGCCATTGACGCCGGAGATTGGAGGGTTGAACAGCTTGAAATCTTTGGATTTGTCGAACAATATGCTTGTGGGTGAGATTCCCGCCTCGTTCGCCCAGTTGAAGAACTTGACGCTGTTGAATCTGTTTAGAAACAAGCTACATGGGGCGATTCCTTCCTTTATTGGCGACTTGCCGAAGCTGGAGGTGTTGCAGTTATGGGAGAATAATTTCACGGAAGCCATTCCACAGAACCTGGGGAAGAACGGAATGCTTCAGATATTGGATCTTTCTTCCAATAAGCTGACTGGAACTCTTCCTCCCGATATGTGCTACGGTAATCGGCTTCAAACTCTGATCGCATTGAGCAATTTCTTGTTTGGTCCAATCCCAGAGTCGCTAGGCAAATGCGTTTCGCTGAATCGCATTCGTATGGGGGAAAATTTTCTCAATGGATCCATTCCAAAGGGGCTTCTGAGTCTGCCAAAGCTCTCTCAGGTGGAGTTACAGGACAATTTCCTCTCCGGCGAGTTCCCAATAACCGATTCGATCTCATTGAATCTCGGCCAGATTAGTCTCTCGAACAACCGACTCACCGGGTCAATTCCGCCGACAATCGGCAACTTCTCCGGCGTCCAGAAACTACTACTTGACGGAAACAAGTTCTCCGGTCAAATCCCACCTGAGATTGGACGGTTACAGCAACTTTCGAAGATAGATTTCAGTAACAATAAGCTGTCGGGTCCAATCGCGCCGGAGGTTAGCCAATGCAAGCTTCTAACCTTCGTCGATCTCAGCCGAAACGAGCTCTCGGGAGAAATTCCAAACGAGATTACCAGTATGAGGATATTGAATTACCTGAATCTCTCAAAAAACCATTTAGTCGGCGGAATCCCTGCTTCCATATCCAGCATGCAGAGTTTAACCTCCGTTGATTTCTCATACAACAACCTCTCCGGTTTAGTTCCGGGAACTGGGCAATTCAGTTACTTCAATTACACATCGTTTTTGGGAAATCCTGATCTCTGCGGCCCATATTTGGGACCATGCAAAGATGGGGTTGCCAATAGCAATTACCAACAACATGTAAAGGGCCCCCTCTCTGCTTCTCTCAAGCTCCTCCTTGTAATTGGTCTGCTTCTTTGCTCCATTGCATTTGCAGTTGCTGCCATCATCAAAGCTCGATCGTTAAAGAGAGCCAGCGAGTCTCGAGCTTGGAAATTAACATCCTTCCAACGCCTAGATTTCACAGTTGATGATGTTCTTGATTGCTTGAAAGAGGATAACATTATTGGAAAAGGAGGGGCCGGAATTGTGTATAAAGGGGCCATGCCAAGTGGTGACCAGGTCGCCGTCAAAAGGCTGCCGGCGATGAGCCGTGGATCGTCCCACGACCATGGATTCAACGCTGAGATACAAACTCTTGGAAGGATTCGTCATCGACATATTGTAAGACTATTGGGATTTTGTTCAAACCATGAGACTAATCTTTTGATTTATGAGTTTATGCCTAATGGGAGTTTGGGGGAAGTTCTTCATGGCAAAAAAGGGGGTCACCTTCAGTGGGATACAAGGTATAAGATTGCTATTGAAGCTGCTAAAGGGCTTTGCTATCTCCACCATGATTGCTCGCCACTCATTGTTCATCGAGATGTTAAATCAAACAACATACTTCTTGACACTAATTTTGAAGCTCATGTTGCTGATTTTGGCCTTGCCAAGTTCTTACAGGATTCCGGCACTTCTGAGTGCATGTCTGCGATTGCTGGTTCTTATGGATATATTGCCCCAGAATACGCCTACACGCTAAAAGTTGACGAGAAGAGTGACGTATATAGCTTTGGAGTTGTCCTGTTGGAGCTTGTTAGTGGAAGAAAACCGGTCGGAGAATTCGGGGACGGTGTCGACATAGTTCAATGGGTTAGAAAAATGACAGACTCAAACAAGGAAGAGGCAGTGAAAATCCTTGATCCAAGGCTGTCCTCCGTGCCTCTCCACGAAGTGATGCACGTCTTCTACGTCGCAATGCTGTGCGTCGAGGAACAGGCGGTCGAGCGTCCGACAATGCGGGAAGTGATCCAAATCCTATCAGAGATTCCTCAGCCACCATGTTCAAAACAGGGAGGAGATTCAACACTCCCCAACTCCTCACCACCACCAGCAGCTGCCGATTTAGACCTTCCAACAACAGGAGCCAAGAACAAAAAAGACCATCAGCAGCAGCAGCCGCCGCCACCAGATCTTCTTAGCATTTGA 3048 48.1 MRLLLLLLCLLQLHIHHSLSARVSEYRALLSLKTSITGDPKSSLSSWNASTSHCTWFGVTCDLRRHVTALDLSGLGLSGSLSPDVAFLRFLTNLSLAANDFSGPIPPEISSVSSLRLLNLSNNVFDGSFPSRLSQLQNLQVLDLYNNNMTGDFPIVVTEMSSLRHLHLGGNFFSGRIPPEVGRMQSLEYLAVSGNELSGPIPPEIGNLTNLHELYIGYFNAYDGGIPAEIGNLSKLVRLDAANCGLSGRIPPELGKLQNLDTLFLQVNALSGPLTPEIGGLNSLKSLDLSNNMLVGEIPASFAQLKNLTLLNLFRNKLHGAIPSFIGDLPKLEVLQLWENNFTEAIPQNLGKNGMLQILDLSSNKLTGTLPPDMCYGNRLQTLIALSNFLFGPIPESLGKCVSLNRIRMGENFLNGSIPKGLLSLPKLSQVELQDNFLSGEFPITDSISLNLGQISLSNNRLTGSIPPTIGNFSGVQKLLLDGNKFSGQIPPEIGRLQQLSKIDFSNNKLSGPIAPEVSQCKLLTFVDLSRNELSGEIPNEITSMRILNYLNLSKNHLVGGIPASISSMQSLTSVDFSYNNLSGLVPGTGQFSYFNYTSFLGNPDLCGPYLGPCKDGVANSNYQQHVKGPLSASLKLLLVIGLLLCSIAFAVAAIIKARSLKRASESRAWKLTSFQRLDFTVDDVLDCLKEDNIIGKGGAGIVYKGAMPSGDQVAVKRLPAMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLIYEFMPNGSLGEVLHGKKGGHLQWDTRYKIAIEAAKGLCYLHHDCSPLIVHRDVKSNNILLDTNFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVSGRKPVGEFGDGVDIVQWVRKMTDSNKEEAVKILDPRLSSVPLHEVMHVFYVAMLCVEEQAVERPTMREVIQILSEIPQPPCSKQGGDSTLPNSSPPPAAADLDLPTTGAKNKKDHQQQQPPPPDLLSI 1015
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30965638 30969034 - CcPI632755_04g015600.1 Cco04g1560 176785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1560 1015 ProSiteProfiles Protein kinase domain profile. 689 963 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g1560 1015 Gene3D Transferase(Phosphotransferase) domain 1 767 971 - -
Cco04g1560 1015 Pfam Leucine rich repeat 114 171 IPR001611 GO:0005515(InterPro)
Cco04g1560 1015 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 767 976 - -
Cco04g1560 1015 ProSitePatterns Serine/Threonine protein kinases active-site signature. 811 823 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g1560 1015 Gene3D Ribonuclease Inhibitor 239 353 IPR032675 -
Cco04g1560 1015 MobiDBLite consensus disorder prediction 964 1015 - -
Cco04g1560 1015 MobiDBLite consensus disorder prediction 998 1015 - -
Cco04g1560 1015 Gene3D Ribonuclease Inhibitor 354 618 IPR032675 -
Cco04g1560 1015 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 333 618 - -
Cco04g1560 1015 SUPERFAMILY Protein kinase-like (PK-like) 681 960 IPR011009 -
Cco04g1560 1015 Gene3D Ribonuclease Inhibitor 177 238 IPR032675 -
Cco04g1560 1015 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 82 325 - -
Cco04g1560 1015 MobiDBLite consensus disorder prediction 964 982 - -
Cco04g1560 1015 Gene3D Phosphorylase Kinase; domain 1 654 766 - -
Cco04g1560 1015 Pfam Leucine rich repeat N-terminal domain 25 62 IPR013210 -
Cco04g1560 1015 SMART LRR_typ_2 112 136 IPR003591 -
Cco04g1560 1015 SMART LRR_typ_2 329 353 IPR003591 -
Cco04g1560 1015 SMART LRR_typ_2 354 377 IPR003591 -
Cco04g1560 1015 SMART LRR_typ_2 160 184 IPR003591 -
Cco04g1560 1015 SMART LRR_typ_2 569 592 IPR003591 -
Cco04g1560 1015 SMART LRR_typ_2 497 521 IPR003591 -
Cco04g1560 1015 SMART LRR_typ_2 281 304 IPR003591 -
Cco04g1560 1015 SMART serkin_6 689 937 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g1560 1015 Gene3D Ribonuclease Inhibitor 22 176 IPR032675 -
Cco04g1560 1015 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 658 766 - -
Cco04g1560 1015 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 7 963 IPR050647 -
Cco04g1560 1015 Pfam Protein kinase domain 691 958 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g1560 1015 SUPERFAMILY RNI-like 70 391 - -
Cco04g1560 1015 Pfam Leucine Rich Repeat 283 305 IPR001611 GO:0005515(InterPro)
Cco04g1560 1015 Pfam Leucine Rich Repeat 477 497 IPR001611 GO:0005515(InterPro)
Cco04g1560 1015 Pfam Leucine Rich Repeat 356 375 IPR001611 GO:0005515(InterPro)
Cco04g1560 1015 Pfam Leucine Rich Repeat 548 569 IPR001611 GO:0005515(InterPro)
Cco04g1560 1015 Pfam Leucine Rich Repeat 235 257 IPR001611 GO:0005515(InterPro)
Cco04g1560 1015 Pfam Leucine Rich Repeat 524 545 IPR001611 GO:0005515(InterPro)
Cco04g1560 1015 Pfam Leucine Rich Repeat 186 208 IPR001611 GO:0005515(InterPro)
Cco04g1560 1015 Pfam Leucine Rich Repeat 451 473 IPR001611 GO:0005515(InterPro)
Cco04g1560 1015 SUPERFAMILY L domain-like 298 614 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0128 Cco-Chr4:2896121 Cco04g1560 Cco-Chr4:30965638 3.70E-58 dispersed
Cco04g1560 Cco-Chr4:30965638 Cco10g0762 Cco-Chr10:12065143 1.30E-22 dispersed
Cco04g1559 Cco-Chr4:30948394 Cco04g1560 Cco-Chr4:30965638 1.70E-24 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86765 PF07714 PK_Tyr_Ser-Thr 4.10E-46 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1560 - - - 0.0