Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco04g1576 | ATGGAGCTCAGTCAACATGGTTTCTTAGAAGAGTTATTAGCTTCAACGCCTTGGACCTCTTCATACTCAAATGGTTTCAATGATTTCTTCCAAAATGGATGGAATTTCAGCACTTTTGATGAGAATCCCCAAATGGGTACATCTAATTTCCCTAATTTTCCCGGTATCCAAACAGCTAATGATTTTTCTTTCGCCGATCAACAGCTCTACGGCAATTTTCTCGAAGGGTTTGCAATGCCGGAGCTTGATTCCTCATCGTACACTAAGAACAACGAAACCCCACCATTTATTTCTCAAGAAGAAATGAGTAATAAGAACAGTGGTTACCCTCCGGCGGCGATGGAGGAGGAAGAACTTGGATTTATAGAGATTGAAACAGCTCCAAGTGTTTGCAAAGTGGAAATGGAGCAAATGGGTTTGCGTGAAACTAATGGTTCTAAAATGGGTGTGGCAGAATTAGGGAAAAGAAGCAGCATCAAGGCTAAAAAGATTGAAGGACAGCCCTCAAAGAATTTAATGGCGGAAAGAAGAAGAAGGAAGCGGTTGAACGATCGGCTTTCAATGCTCAGAGCCATAGTCCCTAAAATAAGCAAGGTAAAGCAGATGGATAGAACGTCTATACTTGGAGACACAATCGATTATGTGAAAGAGCTGATAGAAAGAATCAATAACTTGAAAGAAGAAGAGGAAATTGGTTTAGATTCAAATCACGTGGGCTTCTTCAATGGGATCTCCAAGGAAGGGAAGTCCAACGAAGTTCAAGTGAGGAATTCCCCAAAGTTCGAAGTTGAAAGAACGGAGAGGGAGACTCGAATCGACATTTGCTGTGCAACGAGGCCAGGGTTATTACTGTCTACAGTCAACACATTAGAAGCATTGGGGCTTGAGATTCAACAGTGTGTTATTAGCTGTTTCAATGATTTTTCAATGCAAGCTTCTTGTTCAGAGGGAAGTGCTCAGAAAGCTGTGGCAAGTTCTGACGATATAAAGGAATCACTGTTCAGAAATGCAGGATATGGAGGGAAGTGCTTGTAG | 1035 | 41.74 | MELSQHGFLEELLASTPWTSSYSNGFNDFFQNGWNFSTFDENPQMGTSNFPNFPGIQTANDFSFADQQLYGNFLEGFAMPELDSSSYTKNNETPPFISQEEMSNKNSGYPPAAMEEEELGFIEIETAPSVCKVEMEQMGLRETNGSKMGVAELGKRSSIKAKKIEGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKVKQMDRTSILGDTIDYVKELIERINNLKEEEEIGLDSNHVGFFNGISKEGKSNEVQVRNSPKFEVERTERETRIDICCATRPGLLLSTVNTLEALGLEIQQCVISCFNDFSMQASCSEGSAQKAVASSDDIKESLFRNAGYGGKCL | 344 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 31146122 | 31147447 | - | CcPI632755_04g015760.1 | Cco04g1576 | 176801 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco04g1576 | 344 | SMART | finulus | 172 | 224 | IPR011598 | GO:0046983(InterPro) | |
| Cco04g1576 | 344 | Gene3D | - | 158 | 232 | IPR036638 | GO:0046983(InterPro) | |
| Cco04g1576 | 344 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 166 | 218 | IPR011598 | GO:0046983(InterPro) | |
| Cco04g1576 | 344 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 170 | 231 | IPR036638 | GO:0046983(InterPro) | |
| Cco04g1576 | 344 | Pfam | Plant bHLH transcription factor, ACT-like domain | 262 | 333 | IPR054502 | - | |
| Cco04g1576 | 344 | Pfam | Helix-loop-helix DNA-binding domain | 173 | 218 | IPR011598 | GO:0046983(InterPro) | |
| Cco04g1576 | 344 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 118 | 339 | IPR051358 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco04g1576 | Cco-Chr4:31146122 | Cco05g1458 | Cco-Chr5:17366415 | 1.20E-30 | dispersed | |
| Cco11g1535 | Cco-Chr11:28224385 | Cco04g1576 | Cco-Chr4:31146122 | 2.00E-70 | wgd | |
| Cco04g1576 | Cco-Chr4:31146122 | Cco08g1344 | Cco-Chr8:25321866 | 2.30E-64 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 59094 | PF00010 | HLH | 6.40E-10 | No_clan | Cco | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco04g1576 | - | - | - | 0.0 |