Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1576 ATGGAGCTCAGTCAACATGGTTTCTTAGAAGAGTTATTAGCTTCAACGCCTTGGACCTCTTCATACTCAAATGGTTTCAATGATTTCTTCCAAAATGGATGGAATTTCAGCACTTTTGATGAGAATCCCCAAATGGGTACATCTAATTTCCCTAATTTTCCCGGTATCCAAACAGCTAATGATTTTTCTTTCGCCGATCAACAGCTCTACGGCAATTTTCTCGAAGGGTTTGCAATGCCGGAGCTTGATTCCTCATCGTACACTAAGAACAACGAAACCCCACCATTTATTTCTCAAGAAGAAATGAGTAATAAGAACAGTGGTTACCCTCCGGCGGCGATGGAGGAGGAAGAACTTGGATTTATAGAGATTGAAACAGCTCCAAGTGTTTGCAAAGTGGAAATGGAGCAAATGGGTTTGCGTGAAACTAATGGTTCTAAAATGGGTGTGGCAGAATTAGGGAAAAGAAGCAGCATCAAGGCTAAAAAGATTGAAGGACAGCCCTCAAAGAATTTAATGGCGGAAAGAAGAAGAAGGAAGCGGTTGAACGATCGGCTTTCAATGCTCAGAGCCATAGTCCCTAAAATAAGCAAGGTAAAGCAGATGGATAGAACGTCTATACTTGGAGACACAATCGATTATGTGAAAGAGCTGATAGAAAGAATCAATAACTTGAAAGAAGAAGAGGAAATTGGTTTAGATTCAAATCACGTGGGCTTCTTCAATGGGATCTCCAAGGAAGGGAAGTCCAACGAAGTTCAAGTGAGGAATTCCCCAAAGTTCGAAGTTGAAAGAACGGAGAGGGAGACTCGAATCGACATTTGCTGTGCAACGAGGCCAGGGTTATTACTGTCTACAGTCAACACATTAGAAGCATTGGGGCTTGAGATTCAACAGTGTGTTATTAGCTGTTTCAATGATTTTTCAATGCAAGCTTCTTGTTCAGAGGGAAGTGCTCAGAAAGCTGTGGCAAGTTCTGACGATATAAAGGAATCACTGTTCAGAAATGCAGGATATGGAGGGAAGTGCTTGTAG 1035 41.74 MELSQHGFLEELLASTPWTSSYSNGFNDFFQNGWNFSTFDENPQMGTSNFPNFPGIQTANDFSFADQQLYGNFLEGFAMPELDSSSYTKNNETPPFISQEEMSNKNSGYPPAAMEEEELGFIEIETAPSVCKVEMEQMGLRETNGSKMGVAELGKRSSIKAKKIEGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKVKQMDRTSILGDTIDYVKELIERINNLKEEEEIGLDSNHVGFFNGISKEGKSNEVQVRNSPKFEVERTERETRIDICCATRPGLLLSTVNTLEALGLEIQQCVISCFNDFSMQASCSEGSAQKAVASSDDIKESLFRNAGYGGKCL 344
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 31146122 31147447 - CcPI632755_04g015760.1 Cco04g1576 176801
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1576 344 SMART finulus 172 224 IPR011598 GO:0046983(InterPro)
Cco04g1576 344 Gene3D - 158 232 IPR036638 GO:0046983(InterPro)
Cco04g1576 344 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 218 IPR011598 GO:0046983(InterPro)
Cco04g1576 344 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 231 IPR036638 GO:0046983(InterPro)
Cco04g1576 344 Pfam Plant bHLH transcription factor, ACT-like domain 262 333 IPR054502 -
Cco04g1576 344 Pfam Helix-loop-helix DNA-binding domain 173 218 IPR011598 GO:0046983(InterPro)
Cco04g1576 344 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 118 339 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1576 Cco-Chr4:31146122 Cco05g1458 Cco-Chr5:17366415 1.20E-30 dispersed
Cco11g1535 Cco-Chr11:28224385 Cco04g1576 Cco-Chr4:31146122 2.00E-70 wgd
Cco04g1576 Cco-Chr4:31146122 Cco08g1344 Cco-Chr8:25321866 2.30E-64 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59094 PF00010 HLH 6.40E-10 No_clan Cco TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1576 - - - 0.0