Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1582 ATGGGTCGAGGGAAGATTGTGATAAGAAGGATTGATAATTCAGCAAGTAGACAAGTGACTTTCTCCAAGAGAAGAAAGGGACTTATTAAAAAGGCTAAAGAACTCTCTATTCTCTGTGATGCTGAAGTTGGTCTCATTATTTTTTCCAGCTCTGGCAAACACTATGAATTTGCAAGCACTAGCATACAGTCAGTAATTGAGAAATATAACAGAAGGAAGGAGGAAGATCAACTGCTGTTGAATCCAATTTCAGATGTCAAGTTATGGCAGAAGGAAGTAACAACTCTAAGGCAGCAACTACATAACTTGCAGGAGAACAATAGGAAATTAATGGGGGAGCAGCTCTATGGTTTATCAATCAAAGACCTAAACAATCTTGAGAGCCAATTGGAATTTAGCTTACAAAGCATCCGAATTAAAAAGGAACAAATATTAAATGATGAAATAAAAGAATTGAACCGAAAGGGAATTCTGATGCATCAAGAAAATATAGAGTTGAGCAATAAAGTAAACCTTTATTGTCAAGAAAACATGGAATTACACAGAAAGGTTTACGGGCATGATTCGAGATCAGAGATGAACTTGGCCACCGGAAATGCCTTGATTCCATATGGTATCATCACCGCCGCCGCCGTCCCTATTGCAAGCGACGCCCTGCGTGTACCAATCCATCTTCAGCTCAGCCCGCCGGAGCAACAAGCTTAA 705 39.86 MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASTSIQSVIEKYNRRKEEDQLLLNPISDVKLWQKEVTTLRQQLHNLQENNRKLMGEQLYGLSIKDLNNLESQLEFSLQSIRIKKEQILNDEIKELNRKGILMHQENIELSNKVNLYCQENMELHRKVYGHDSRSEMNLATGNALIPYGIITAAAVPIASDALRVPIHLQLSPPEQQA 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31196782 31199784 - CcPI632755_04g015820.1 Cco04g1582 176807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1582 234 Gene3D - 13 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco04g1582 234 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco04g1582 234 Pfam K-box region 85 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco04g1582 234 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco04g1582 234 Coils Coil 123 143 - -
Cco04g1582 234 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cco04g1582 234 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 187 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cco04g1582 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco04g1582 234 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco04g1582 234 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco04g1582 234 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco04g1582 234 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco04g1582 234 Coils Coil 86 113 - -
Cco04g1582 234 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1582 Cco-Chr4:31196782 Cco04g2193 Cco-Chr4:35570562 3.90E-36 dispersed
Cco10g0961 Cco-Chr10:20860110 Cco04g1582 Cco-Chr4:31196782 1.20E-57 transposed
Cco11g1527 Cco-Chr11:28128783 Cco04g1582 Cco-Chr4:31196782 1.90E-29 transposed
Cco11g1526 Cco-Chr11:28118774 Cco04g1582 Cco-Chr4:31196782 2.10E-21 wgd
Cco04g1582 Cco-Chr4:31196782 Cco08g1324 Cco-Chr8:25095851 4.70E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59095 PF01486 K-box 1.40E-23 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1582 K09264 - csv:101206453 426.787