Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1583 ATGGAGAAGAAAGGCAAAAGAAGAAGGCAACAGAAAAAGCTTGAGTTCCCAGCAATGGCTGCACTGCTTTTCTTATTCTTCAGTTTATCTCTCGCCAACGACAATCCACAACAACAACATTCCTCCCAACAAATGGTAGAAAATTTGGTGGAGAACAACAACAAATCAATGTTGTCACGCGACGTAACCTTCGAATGGCAGAATCATGGACAGGTGGTAATTGACAATGGGTTAGTTCGAGTCACATTATCTCGTCCAGAAGGCAATGTTATTGGCCTAAAATACAAGGGTATTGATAACGTACTTGAAATTCACAACCCACAATATAACAGAGGCTATTGGGACGTGGTTTGGAACCAGCCAAATAGAGCTAGTGCCACGGACAGAGTAAGAGCGACCAATTTCAAAGTGATTACGGCCAACAGTGACCAGATAGAGCTTTCATTCACCAAAACTTGGGATCCTTCTGACTCTTTTTCACTCCCTTTGAACATAGACAAAAGGTATATTCTTCGACGTGGTGATTCTGGGTTCTATTCATATGGCATATTTGAACGACTTGATGGATGGCCTCAAATCGACATTGACCAAATTAGAATTGCCTACAAACTTCGAGGGGACAAATTTCATTACATGGCGGTATCAGACGATAGACAAAGAATCATGCCAACGTTACAGGATCGTCTAACAGGACGACCTCTAGCTTATCCGGAGGCTGTTCTCTTAACTCGACCCACCAATTCTAACCTCAAAGGAGAGGTGGACGATAAGTACCAATACTCCTTAGAAAATATGGAGAACAAGGTTCATGGATGGGAATCGAATGAGCCACACGTGGGATTCTGGATGATCACGCCCAGTGATGAGTTTCGCACGGCGGGGCCCCTCAAGCAAGATCTCACTTCCCACGTCGGCCCCACCACTCTCTCCATGTTTGTGAGTACGCATTATGCGGGTAAAGAAGTTTCCATGAGATTTGGAGAGGGAGAGGCTTGGAAGAAGGTTTTCGGACCGGTTTTCACTTATCTAAACTCGGATCCGACCGGCACTGAAAATCTCGGTTCACTATGGGAAGATGCTAAAAATCAGATGAGGATAGAAACGAGTAAGTGGCCATACAACTTTGTTGAATCCGAAGACTTTCCCTCGTCTGACCAAAGAGGAACCGTGACTGGTCGATTACTAGTCCGAGATAGATATGCTAAGAATTCACTGATGTGGGCCGATTCGGCTTATGTGGGCCTCGCTGCTCCCGGGGAATTAGGGTCTTGGCAAAAAGAAAGCAAGGGATATCAATTCTGGACACGCACAGACGAGCAAGGATACTTCTCAATTGATAACATAAGGCCTGGAAACTACAATCTCTATGCTTGGGTACCTGGTGTCATTGGAGATTACAAGTACGACGATATAATCACTGTCACACCAAGGAGTTCCACTAGCCTAAACTTGTTGGTCTATGACCCTCCAAGACAAGGCCCAACTTTGTGGGAGATTGGTGTCCCAGATAGGACGGCGGCTGAGTTCTATATACCGAATCCCCAACCCACCCTCATGAACCATCTTTACAACAATTCCAAATTCCACACCCAAGATAATTTTCGACAGTATGGTCTTTGGGATCGTTACTCTGAATTGTATCCCAATCAAGATCTCGTCTACAACGTCGCCACCGACAATTACCGTCGTCATTGGTTCTTCGCTCATGTCACAAGAGCCACTCATTTCGACACCTACGAGTCAACCACTTGGCAAATTGTGTTTCGTCTTCAAGGGCCTAAACAGACCGGTAACTATATGCTCCGATTGGCCTTGGCCTCCTCTACCGAGGCGGTGGTCGATATCCGGTTCAACAATCCGTCTGCCAGACGGGCTCATTTCACGACCGGGTATTGGTCCTCAGGAAGAGATAACGCCATTGCCAGACATGGGATTCATGGGCTTTATTGGTTGTTCAACTTCGAGGTTCCAAGTGAATATTTGGTAGAAGATGAAAACATAATCTATCTTACACAGAGAAGACATACAGGGCCCTTTCAAGGTGTAATGTACGACTACATCCGATTTGAAGGTGTAGAGTAA 2082 45.44 MEKKGKRRRQQKKLEFPAMAALLFLFFSLSLANDNPQQQHSSQQMVENLVENNNKSMLSRDVTFEWQNHGQVVIDNGLVRVTLSRPEGNVIGLKYKGIDNVLEIHNPQYNRGYWDVVWNQPNRASATDRVRATNFKVITANSDQIELSFTKTWDPSDSFSLPLNIDKRYILRRGDSGFYSYGIFERLDGWPQIDIDQIRIAYKLRGDKFHYMAVSDDRQRIMPTLQDRLTGRPLAYPEAVLLTRPTNSNLKGEVDDKYQYSLENMENKVHGWESNEPHVGFWMITPSDEFRTAGPLKQDLTSHVGPTTLSMFVSTHYAGKEVSMRFGEGEAWKKVFGPVFTYLNSDPTGTENLGSLWEDAKNQMRIETSKWPYNFVESEDFPSSDQRGTVTGRLLVRDRYAKNSLMWADSAYVGLAAPGELGSWQKESKGYQFWTRTDEQGYFSIDNIRPGNYNLYAWVPGVIGDYKYDDIITVTPRSSTSLNLLVYDPPRQGPTLWEIGVPDRTAAEFYIPNPQPTLMNHLYNNSKFHTQDNFRQYGLWDRYSELYPNQDLVYNVATDNYRRHWFFAHVTRATHFDTYESTTWQIVFRLQGPKQTGNYMLRLALASSTEAVVDIRFNNPSARRAHFTTGYWSSGRDNAIARHGIHGLYWLFNFEVPSEYLVEDENIIYLTQRRHTGPFQGVMYDYIRFEGVE 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31210125 31214707 + CcPI632755_04g015830.1 Cco04g1583 176808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1583 693 CDD RGL4_C 497 690 - -
Cco04g1583 693 SUPERFAMILY Starch-binding domain-like 384 485 IPR013784 GO:0030246(InterPro)
Cco04g1583 693 SUPERFAMILY Galactose mutarotase-like 68 353 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Cco04g1583 693 Gene3D - 493 689 - -
Cco04g1583 693 CDD RGL4_N 64 348 - -
Cco04g1583 693 Pfam Rhamnogalacturonate lyase family 66 254 IPR010325 -
Cco04g1583 693 Pfam Polysaccharide lyase family 4, domain II 409 481 IPR029413 -
Cco04g1583 693 CDD RGL4_M 386 483 IPR029413 -
Cco04g1583 693 FunFam Rhamnogalacturonate lyase B 383 483 - -
Cco04g1583 693 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 52 691 IPR051850 -
Cco04g1583 693 Pfam Polysaccharide lyase family 4, domain III 495 689 IPR029411 -
Cco04g1583 693 Gene3D - 383 485 - -
Cco04g1583 693 SUPERFAMILY Galactose-binding domain-like 493 690 IPR008979 -
Cco04g1583 693 Gene3D - 64 353 IPR014718 GO:0030246(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1583 Cco-Chr4:31210125 Cco11g1524 Cco-Chr11:28093468 1.10E-224 dispersed
Cco10g0780 Cco-Chr10:13584097 Cco04g1583 Cco-Chr4:31210125 4.00E-238 transposed
Cco11g1522 Cco-Chr11:28070757 Cco04g1583 Cco-Chr4:31210125 2.50E-210 wgd
Cco04g1583 Cco-Chr4:31210125 Cco08g1308 Cco-Chr8:24900713 2.30E-217 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1583 K18195 - csv:101206696 1132.86