Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1584 ATGGGGAAATCACCGGCGGAAGAGCATCCTAAGAAGGCTTTTGGATGGGCTGCCTCAGATACCTCCGGCCTTCTTTCTCCATTTCATTTCTCCAGAAGAGAAACAGGGGAAAATGATGTAGCTTTTAAAGTTCTTTACTGTGGAATTTGCCATTCTGACCTTCACATGGTGAAGAATGAGTGGGGAACTACCATTTACCCTATCGTTCCTGGTCATGAAATCGTGGGCGAGGTAACAGAGGTTGGAAGCAAAGTAAAGAACTTCAAGGTCGGAGACAAAGTTGGCGTAGGATGTATGGTTCAATCCTGCCGCTCCTGTGATAACTGTTCCAACGACCTCGAGAACTATTGCCCCAAAATGATCCTCACCTACTCCGCCAAGAACACTGACGGGACCATAACCTACGGAGGCTACTCCGACTGTATGGTCGCTGACGAGCATTTCATTGTTCGCATTCCCGATGGCATCCCTCTGCACGCTGGGGCTCCCCTGCTGTGCGCTGGTATCACAGTTTACAGCCCCTTGAGATACTTTGGACTTGACAAGCCTGGAATGCACATCGGCGTTGTTGGCCTCGGTGGGCTTGGCCATGTTGCCGTCAAATTTGCTAAGGCCTTCGGCGCTATGGTTACTGTGATTAGTACGTCGCCTAATAAGAAGCAGGAGGCTATTGAACATCTTGGGGCTGATTCATTCTTGGTCAGCCGTGATCAAGAGCAATTGCAGGCTGCTAGGGGGACTTTGGATGGTATCATAGACACAGTCTCTGCTGCACATCCCCTTCTTCCTCTGCTGTCTCTTGTAAAACCACATGGAAAATTTGTTATGGTTGGAGCACCAGAGAAGCCACTTGAGCTCCCAGCCTTTGCTCTTATTGGGGGTAGGAAAACAATGGCCGGTAGTTGCATTGGAGGGATGAAGGAAACACAAGAGATGATTGATTTTGCTGCCAAACACAACATTACGGCAGATGTCGAGGTGATTCCAATGGCAGACGTCAACAAGGCAATGGAACGAATGCTGAAACAGGATGTCAAGTATCGGTTCGTCATCGACATTGCCAACTCATTGAAGCCGTAG 1080 48.98 MGKSPAEEHPKKAFGWAASDTSGLLSPFHFSRRETGENDVAFKVLYCGICHSDLHMVKNEWGTTIYPIVPGHEIVGEVTEVGSKVKNFKVGDKVGVGCMVQSCRSCDNCSNDLENYCPKMILTYSAKNTDGTITYGGYSDCMVADEHFIVRIPDGIPLHAGAPLLCAGITVYSPLRYFGLDKPGMHIGVVGLGGLGHVAVKFAKAFGAMVTVISTSPNKKQEAIEHLGADSFLVSRDQEQLQAARGTLDGIIDTVSAAHPLLPLLSLVKPHGKFVMVGAPEKPLELPAFALIGGRKTMAGSCIGGMKETQEMIDFAAKHNITADVEVIPMADVNKAMERMLKQDVKYRFVIDIANSLKP 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31215056 31217513 - CcPI632755_04g015840.1 Cco04g1584 176809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1584 359 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270(InterPro)|GO:0016491(InterPro)
Cco04g1584 359 Gene3D - 16 353 - -
Cco04g1584 359 SUPERFAMILY GroES-like 22 184 IPR011032 -
Cco04g1584 359 PANTHER ALDEHYDE REDUCTASE 6 356 IPR047109 GO:0009809(PANTHER)|GO:0016616(InterPro)|GO:0016616(PANTHER)|GO:0045551(PANTHER)
Cco04g1584 359 Pfam Zinc-binding dehydrogenase 194 317 IPR013149 -
Cco04g1584 359 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 157 321 IPR036291 -
Cco04g1584 359 FunFam Cinnamyl alcohol dehydrogenase 167 323 - -
Cco04g1584 359 Pfam Alcohol dehydrogenase GroES-like domain 36 154 IPR013154 -
Cco04g1584 359 CDD CAD1 14 352 IPR047109 GO:0016616(InterPro)
Cco04g1584 359 SMART PKS_ER_names_mod 23 351 IPR020843 GO:0016491(InterPro)
Cco04g1584 359 Gene3D - 167 323 - -
Cco04g1584 359 FunFam Uncharacterized protein 16 166 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0076 Cco-Chr2:815910 Cco04g1584 Cco-Chr4:31215056 1.10E-143 dispersed
Cco02g0077 Cco-Chr2:828367 Cco04g1584 Cco-Chr4:31215056 1.70E-147 dispersed
Cco02g0698 Cco-Chr2:7064879 Cco04g1584 Cco-Chr4:31215056 4.30E-103 dispersed
Cco04g0429 Cco-Chr4:13923938 Cco04g1584 Cco-Chr4:31215056 6.80E-26 dispersed
Cco04g1584 Cco-Chr4:31215056 Cco05g1779 Cco-Chr5:26444826 2.10E-121 dispersed
Cco04g1584 Cco-Chr4:31215056 Cco05g1196 Cco-Chr5:11119277 8.50E-107 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1584 K23232 - csv:101222715 683.715