Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1587 ATGGAAATAGAAAGAAAACATCGGAGGCGCCCCCGATCTTTTCCAGTTTCCAGTCCCGCCATTCAAAATTTCACTTCAATCTTTCTTCCTCCTCATGAGGGTGCACAAATGAGCTTCTTTGTCTCCTCAGGTTTAACTGTTACTATCTGTAATATGGGAACTCAAGGTCAAACAGGATTAGTAGCACAAAAGAAGATGCAGCCTCCTCAACCTGGAAGATTTGAAGATCGTGAAGATCTCATTAAATATGTTCGTGATTTTGGTGCTGATCAAGGATATGTGGTAACAATTAAGAAGTCTAGGAAAGATAGAAGGGTCATCCTTGGTTGTGATAGAGGAGGCGTGTACCGTAATAGGCGTAAGATTGATGAGAGTCCACGCAAAAGGAAAGCTAGCTCGCGCCTGATAAATTGCCCGTTTGAAGCAATTGGCAAGAAGGAAGATGATGCCTGGATGCTTACCATTAAAAATGGGGACCATAACCATGAGCCCTTAAAAGACATGTCAGAGCATCCTTACAGTCGCCGTTTTACTGAGGATGAAGTAATGCAAATAAAACTGATGACTGAAGCTGGTATAAAACCACGTCAAGTGCTTAAAGCTCTCAAACAACACAATCCGGATCTGCAGTCAACACCAAGGCATTTGTATAACCTCAAAGCCAAAATTCGCCAAGGAAATCTATCAGAAAAAAATTTCAAGTCATGGAGACCTAATATTTCAGTTCCTACAAATAGTAGTCATACTGTCATTGGGGATTCAGTCAGGCAAAATCATCAGCTGAAGGTTCCTAATTTAATTGGAGGGGAATTTTTGGATTCGCACAACTGTCCAGTGGTTGATGTTATTAATCCAGCAACACAAGAAGTTGTTTCTCATGTCCCTTTAACAACCTACGAAGAGTTTAAGGCTGCAGTTAATGCAGCCAAACAAGCTTTTCCCTCATGGAGAAACACACCGATTTCTACTCGTCAATGTGTTATGTTCAAGTTTCAGGAGCTCATCCTCAGGGACATGGATAAGCTTGTGACGAATATTGTCACAGAACAGGGAAAAACATTAAGGGATGCTCAAGATGATATCATCTGTGGTTTAGAGGTGGTTAAACATGCTTGTGGATTGGCCACTATGCAAATGGGGGAGTTCATCCCTAATGCAACTGATGGAATTGATTCGTACTGCATCCGAGAACCAATAGGTGTGTGTGCTGGGATATGCTCTTTAAACCATCCAGCAACAGTTTCCTTATGGATGTTTCCGATTGCAGTTACTTGTGGCAATACATTTGTTCTTAAGCCATGTGAAAAGCACCCGGGGGCTTCAATGTTGCTTGCTGCATTAGCAGTTGAGGCTGGCTTGCCTGATGGTGTTCTAAATATTGTTCATGGAACCCATGATATCATCAACTATATATGTGATGATGAAGACATAAAAGCCATATCTTTTTCCAGTTCAAGTTCAGTTGGAAAGAACATATATGCTAGGGCTGCTACTACAGGAAAGCAAGTTCAGTCCCACTTTGGAGGCAAGAGTCATGCAATTATTATGCCTGATGCTAACATGGAGGCTACTTTAAGTGCTCTGGTTGATGCTGGATTTGGTACTGCTGGACGGACATGTTTGGCTATCGACATCGTTGTCTCCGTTGGGAGTTCAATTCTGTGGGAAGAAAAACTTGTGGAATGTGCCAAAGCACTTAAAGTGAATGTGGGGACAGATCCCAAAGCTGACCTTGGTCCTGTAATTACCAAACAGGTGAAAGATCGCTTTTGTAAATTAGTTCAAAGTGGCATTGAAGATGGGGCCAGACTTTTGCTTGATGGTAGAGATATTGTGGTCCCAGGATATGAAAATGGAAATTTTGTTGGTCCAACCATTTTATCTGATGTAACAACTGACATGGAGTGCTACAAGGAAGAATTTTTTGGACCAGTTCTCCTTTGTATGCAGGCTGACAACCTAGAGGAGGCTATATCCATTGTAAACAGAAACAAGAACCGAAATGGAGCTTCCATATTCACAACTTCTGGCATTTATGCGAGGAAGTTTCAGAGTGACGTGGAAGTGGGAATGGTTGGTACCAATGTTGCTGTTACAGTTCCGTTGCCATCTTCCTTTAATGATAAGGCAGGACTGGAGTTTTACACCCAGTTGAAAAGAGTGGCTCAACAGTGGAAGAACTCACCAAGTATTGGAGTCTCAATGGCGCTGCCTTCACCATCTGAGAGACATTTGAGATCCCGTGCTGTACCTTCCATGTTGGTTTCAACATCTGAGAAAGATTCACCTGGGATGCAGCACAAAAGTTTACCCCCATTGCCTTCCACATCTGAGAGGGATTCACCTGGTGTCGCTGTACTGCTGCCGAACTCTCAAATATCTCAGACAGGTTTAACCAATGAAAGAGCCACCTCCTCTCCGCCGACTCCTGATAGGGATTTGCACGGTCAGGGACTTTCCCTGATTTCTACCTTGTCATCAGAGGGGGACGTATCCAACCAAGATTTGTCTCCTGCTATGCTTTCAGCAGGCGATAGAGATTTACCTGGTCAAGCTGTGTCAGTGGCAACATCCCGATCATCTGAGCGACTGTATATACCTCAGAAATCTCATTGGAATGCAACCCTGAGGGCTGATTCAATTCCATCCAGTTCTGAGAGGATCCATGTGCCCTCATCGCACACAAGCAACATCAAAGGACAGGCATCTCGAACAACTCATCCGGCTTTGGTCTTAGCTGCAGAGGGGTTATATGTGCCAACATCTCATGACAGTATTTGTCTCATTAACCATAGAAATGATAGTACGGTTCCATCTCGAAGAATCGACAGCATGTGTCAATCATCAGAACGGGTATACATGCTAGCAACTTCCCATCTGAACGACACTATGAGTCGAACATTGCAGAGAACTGATACCTCCTTGTTTTCTTCTTCAGAGAGGCATTATGTGCCTCCCTCTTCTGATGGAAATGACCATATCAGCTTAGCTTCTCATACCGACGTTGCATTGCAATCAACCTCAGATAGAATGTACTTGTCTAGCTTGCCCGAGAGGAACGATAATATGGTTTCCGCTGCTTCTCAACAAGCCGAATCTTTAACATCCACTTCAGAGAGAATGTATATACCTCCATTAGTTCATAGAAATGCAGGTATGGCACCAAAATCGGAATGGCTATGCATTCCCACACCTGCTGGATCTCAGAGAATGTACCCACAAGGTCCAATAGTTTCAGCAGATGAATTTCAAAGCCAAGGAGCATCATTAACATTGCCTGCATCGCAAAGAATTTGTGACGCCCAAGTGGACACAACGCCCCGCCCTTTGATTCGCTCCTCAAACCCTTGGGCAGGCCGATGGGGTCTAGGTCCATTGGCCCTTGTCGTGCTGACTATGCTTGGCCTCGCTCCTGAATGCCATGTAGACCACAGAAGCTTTGAGTTGTTTGTCTAG 3456 43.95 MEIERKHRRRPRSFPVSSPAIQNFTSIFLPPHEGAQMSFFVSSGLTVTICNMGTQGQTGLVAQKKMQPPQPGRFEDREDLIKYVRDFGADQGYVVTIKKSRKDRRVILGCDRGGVYRNRRKIDESPRKRKASSRLINCPFEAIGKKEDDAWMLTIKNGDHNHEPLKDMSEHPYSRRFTEDEVMQIKLMTEAGIKPRQVLKALKQHNPDLQSTPRHLYNLKAKIRQGNLSEKNFKSWRPNISVPTNSSHTVIGDSVRQNHQLKVPNLIGGEFLDSHNCPVVDVINPATQEVVSHVPLTTYEEFKAAVNAAKQAFPSWRNTPISTRQCVMFKFQELILRDMDKLVTNIVTEQGKTLRDAQDDIICGLEVVKHACGLATMQMGEFIPNATDGIDSYCIREPIGVCAGICSLNHPATVSLWMFPIAVTCGNTFVLKPCEKHPGASMLLAALAVEAGLPDGVLNIVHGTHDIINYICDDEDIKAISFSSSSSVGKNIYARAATTGKQVQSHFGGKSHAIIMPDANMEATLSALVDAGFGTAGRTCLAIDIVVSVGSSILWEEKLVECAKALKVNVGTDPKADLGPVITKQVKDRFCKLVQSGIEDGARLLLDGRDIVVPGYENGNFVGPTILSDVTTDMECYKEEFFGPVLLCMQADNLEEAISIVNRNKNRNGASIFTTSGIYARKFQSDVEVGMVGTNVAVTVPLPSSFNDKAGLEFYTQLKRVAQQWKNSPSIGVSMALPSPSERHLRSRAVPSMLVSTSEKDSPGMQHKSLPPLPSTSERDSPGVAVLLPNSQISQTGLTNERATSSPPTPDRDLHGQGLSLISTLSSEGDVSNQDLSPAMLSAGDRDLPGQAVSVATSRSSERLYIPQKSHWNATLRADSIPSSSERIHVPSSHTSNIKGQASRTTHPALVLAAEGLYVPTSHDSICLINHRNDSTVPSRRIDSMCQSSERVYMLATSHLNDTMSRTLQRTDTSLFSSSERHYVPPSSDGNDHISLASHTDVALQSTSDRMYLSSLPERNDNMVSAASQQAESLTSTSERMYIPPLVHRNAGMAPKSEWLCIPTPAGSQRMYPQGPIVSADEFQSQGASLTLPASQRICDAQVDTTPRPLIRSSNPWAGRWGLGPLALVVLTMLGLAPECHVDHRSFELFV 1151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31233484 31247520 + CcPI632755_04g015870.1 Cco04g1587 176812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1587 1151 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 282 507 IPR016162 GO:0016491(InterPro)
Cco04g1587 1151 MobiDBLite consensus disorder prediction 753 776 - -
Cco04g1587 1151 CDD ALDH_F6_MMSDH 263 725 IPR010061 GO:0004491(InterPro)
Cco04g1587 1151 MobiDBLite consensus disorder prediction 787 811 - -
Cco04g1587 1151 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 508 707 - -
Cco04g1587 1151 NCBIfam CoA-acylating methylmalonate-semialdehyde dehydrogenase 265 725 IPR010061 GO:0004491(InterPro)
Cco04g1587 1151 MobiDBLite consensus disorder prediction 753 848 - -
Cco04g1587 1151 SUPERFAMILY ALDH-like 257 727 IPR016161 GO:0016491(InterPro)
Cco04g1587 1151 MobiDBLite consensus disorder prediction 819 839 - -
Cco04g1587 1151 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 267 514 - -
Cco04g1587 1151 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 508 702 IPR016163 GO:0016620(InterPro)
Cco04g1587 1151 MobiDBLite consensus disorder prediction 883 902 - -
Cco04g1587 1151 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 66 739 IPR010061 GO:0004491(PANTHER)|GO:0004491(InterPro)|GO:0005739(PANTHER)|GO:0006210(PANTHER)|GO:0006574(PANTHER)|GO:0018478(PANTHER)
Cco04g1587 1151 Pfam Aldehyde dehydrogenase family 274 702 IPR015590 GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1587 Cco-Chr4:31233484 Cco09g1819 Cco-Chr9:31301829 7.80E-194 dispersed
Cco04g1587 Cco-Chr4:31233484 Cco06g1872 Cco-Chr6:28937996 2.20E-39 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1587 K00140 - csv:101207178 1894.4