Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1594 ATGGATCAAGACAATGGGAAAAAAGTTCACCCTGTGAAGAAAAGATTTGAGGAAGCCATTCATTGGCAACTCCTTCGCACTGCAGAGACAAATCGAAGCCCAACGCCAAAGCGCTTTGTTGAAAATAAGTCAATGAACGGCAAAGCAGAGAAGGTCTTCGTTGCTATCGGGAACGATCTTCACGATGGGTTCAAGACCTTGGGGTGGACTCTAAGGAAATGGAAGTCCCGCCCAATTTCAATAGTGATTCTTCACGTCGCCTACAACAATTCCATGGAATATGTTCACACTCCATTCGGGAAACTGCCTGCGAGTTCTATAAGTGAGGAGAAAGTGGAAGTTCTAAGGAGATATGAGCAGGAAAAAATCGACAAGCTACTTTCTAAATATGTGGATTTTTGTGGCAAGGTAAGAGCCGAAATTCTCAAGGTCGAGAAATCTGATGAACCTGTTCATAAGCTCATTGTTGACTTGATTTCAGAACTGGGAATAACCAATTTGGTCATTGGCTTCACATTCATGAAATCGTCATCTTGGAAGCCGAAGAATGCTATAAGTGGATCATTTTACATTTATAGGAACAAAGCCCATTTTTGCGAGTTATTTGTGATATGGGGAGGAAAACAGGTATTTCTCAGAGATGAAAGAATCATGGAAGATGATAAAGGTGTAAGGATCTCTAAAATCAGCACCAAGCACTCGTTAAAGGGCTGGCTGGGAAAGATGTTCGTGGAAGACCCAAACTATTCCTCAGACAGGAATTTGAGTCTCTCGTCTTCTTCACCAATTGATACAAATTCCATGAGTTCTCGAAATTACTGGGACCAGAATGTTCATGAACTAGAGAACTACTATGAGGAATTACTTTCATTGAATTTACAGGAAGAAGACTGTGAGCAGGATCAAGATGGTGTCCTTGGAAGTTCAAGTTCAACCCAGTTCAATATTCTGGATCATGCGGATTCAAATATGAATGCTGAGGAAAGAATAGAGCATCTGAGAACTAAAATTGAGGAAGCTCGCAAGACCATCCAGTTGATGAAAGATGAAGCAAAGGGTAGTGCTGAAAGGCAAGCTAAAGCAGAGTGGGCCATTAATTTGTGCAGTCAGCGGACCGAAGAGCTTGAAGCTAAGATAAAAGAAGAGGTTACAATTAGGGAAGAGTTGCAAAAAGAATTAAATTCTGCCAAAGAACACATCCTTGAAATAGTAGGTGATATCGAGGAAAGCAAGATCAAATTAGGTTCACTTCTGGAACTCCAAGCTGAATTATCAAGCAAGCTACAGATTTCCACAGCAGGAAAATCGCGTTTAGAGGCTCAATTGGAGAAGACAGCAAAAACAAGAGAGGGGATGGTGAGAGAAATCGAGGAGCTGAGAAGACAAAGAGAGATTCTTCACCGGAGAATTGAGTTCTGTAAAGATAAAGATGCCATTGGAATGACCGAAAGGTCAACTGAAGTGTCTTGTAGTACAAGAGTGTACACGGCAGAAGAAGTCAGATTGGCCACTGATAGCTTTTCAGAACAAATGAGATTGAGTTCCCGAGTGTATAGAGGACGTATCAACCATATCTCAGTTGCAATACAGATGATCGACTCAGGAAACTGTCTGTCAGAAGATGACTTCCAATCTAAGGTGGAGCTTTTAAGCCATATCCATCACCCTCATCTGATTGCCATAATGGGCTTCTGCCCCGAGCTCAAATGCATTGTCTTTGATTACATGCAGAGCGGTAGCTTAAGTGACAGACTACTTCCTTCCAATTCCAACGAAAGATCCAAAAAAATATGTCGCCCTCTCATGTGGCATGAAAGAATCCGTATAGCTTCAGAGGTATGCTCGGCCTTGTGCTTCCTTCACCAGGCCCAACCTCAGCCCATTTCTCATGGCAAACTCACCCTGTCCAAAATTCTCCTGGATCAAAACCTTGCTGCCAAAGTCACTGGTTTTGGGCTCCACGAATTGGATGAAGCTAGTGGTACCGAGTTGGACATCCGGGCCTTTGGGGCTCTGTTGCTACATATTGTAACCGGGAGGACTTGGGAAGGGCTGATTGAGAAGGCATTGTCAATGGGTAAGGTGGGTCTGGTCCAGATTCTAGACGATAAAGCTGGACAGTGGCCATTGAGCTTGGTTGATGGGCTAGTTGATCTGGCTTTGAGATGTGTAACTCCAAATGGTTCCATTTCAGATGTTAACTTGGGGACAGCCATGGAAGAGCTCGATGAGATCAAGAGGAAAGCAGATGATCTGGTGGTTGGAAATGGAAAGGATGAGGGAGGTATTGAAGGTACAGATGCAGCTAATGAGGACATAGATGATGTGCCAAGAATCTTCATCTGTCCCATCTTGCAGGAAGTGATGAAGAACCCACACGTGGCAGCAGATGGGTTTTCTTACGAGCTAGAGGCCATAGAACAATGGTTAAGAGCAGGACATGATACATCACCAATGACCAACTTGAAGCTGCAGCACCCTTATCTCACTCCTAATCATACTCTTCGCTCTCTAATTCAAGACTGGCAAAGTGAGACCTCAAATGTTTAA 2550 43.41 MDQDNGKKVHPVKKRFEEAIHWQLLRTAETNRSPTPKRFVENKSMNGKAEKVFVAIGNDLHDGFKTLGWTLRKWKSRPISIVILHVAYNNSMEYVHTPFGKLPASSISEEKVEVLRRYEQEKIDKLLSKYVDFCGKVRAEILKVEKSDEPVHKLIVDLISELGITNLVIGFTFMKSSSWKPKNAISGSFYIYRNKAHFCELFVIWGGKQVFLRDERIMEDDKGVRISKISTKHSLKGWLGKMFVEDPNYSSDRNLSLSSSSPIDTNSMSSRNYWDQNVHELENYYEELLSLNLQEEDCEQDQDGVLGSSSSTQFNILDHADSNMNAEERIEHLRTKIEEARKTIQLMKDEAKGSAERQAKAEWAINLCSQRTEELEAKIKEEVTIREELQKELNSAKEHILEIVGDIEESKIKLGSLLELQAELSSKLQISTAGKSRLEAQLEKTAKTREGMVREIEELRRQREILHRRIEFCKDKDAIGMTERSTEVSCSTRVYTAEEVRLATDSFSEQMRLSSRVYRGRINHISVAIQMIDSGNCLSEDDFQSKVELLSHIHHPHLIAIMGFCPELKCIVFDYMQSGSLSDRLLPSNSNERSKKICRPLMWHERIRIASEVCSALCFLHQAQPQPISHGKLTLSKILLDQNLAAKVTGFGLHELDEASGTELDIRAFGALLLHIVTGRTWEGLIEKALSMGKVGLVQILDDKAGQWPLSLVDGLVDLALRCVTPNGSISDVNLGTAMEELDEIKRKADDLVVGNGKDEGGIEGTDAANEDIDDVPRIFICPILQEVMKNPHVAADGFSYELEAIEQWLRAGHDTSPMTNLKLQHPYLTPNHTLRSLIQDWQSETSNV 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31292909 31296500 + CcPI632755_04g015940.1 Cco04g1594 176819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1594 849 PANTHER OS02G0152300 PROTEIN 52 840 IPR051348 -
Cco04g1594 849 Gene3D Transferase(Phosphotransferase) domain 1 484 669 - -
Cco04g1594 849 Coils Coil 323 357 - -
Cco04g1594 849 Coils Coil 435 476 - -
Cco04g1594 849 Pfam U-box domain 776 847 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco04g1594 849 SUPERFAMILY RING/U-box 765 847 - -
Cco04g1594 849 Coils Coil 281 301 - -
Cco04g1594 849 ProSiteProfiles Protein kinase domain profile. 496 829 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g1594 849 Pfam Protein tyrosine and serine/threonine kinase 516 656 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g1594 849 Coils Coil 372 406 - -
Cco04g1594 849 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 774 849 IPR013083 -
Cco04g1594 849 ProSiteProfiles U-box domain profile. 775 849 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco04g1594 849 SMART Ubox_2 779 842 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco04g1594 849 CDD RING-Ubox_WDSUB1-like 777 832 - -
Cco04g1594 849 SUPERFAMILY Protein kinase-like (PK-like) 488 727 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1594 Cco-Chr4:31292909 Cco06g0373 Cco-Chr6:4173892 1.70E-73 dispersed
Cco04g1594 Cco-Chr4:31292909 Cco02g2156 Cco-Chr2:34311122 3.70E-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86766 PF07714 PK_Tyr_Ser-Thr 6.20E-16 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1594 - - - 0.0