Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g1594 | ATGGATCAAGACAATGGGAAAAAAGTTCACCCTGTGAAGAAAAGATTTGAGGAAGCCATTCATTGGCAACTCCTTCGCACTGCAGAGACAAATCGAAGCCCAACGCCAAAGCGCTTTGTTGAAAATAAGTCAATGAACGGCAAAGCAGAGAAGGTCTTCGTTGCTATCGGGAACGATCTTCACGATGGGTTCAAGACCTTGGGGTGGACTCTAAGGAAATGGAAGTCCCGCCCAATTTCAATAGTGATTCTTCACGTCGCCTACAACAATTCCATGGAATATGTTCACACTCCATTCGGGAAACTGCCTGCGAGTTCTATAAGTGAGGAGAAAGTGGAAGTTCTAAGGAGATATGAGCAGGAAAAAATCGACAAGCTACTTTCTAAATATGTGGATTTTTGTGGCAAGGTAAGAGCCGAAATTCTCAAGGTCGAGAAATCTGATGAACCTGTTCATAAGCTCATTGTTGACTTGATTTCAGAACTGGGAATAACCAATTTGGTCATTGGCTTCACATTCATGAAATCGTCATCTTGGAAGCCGAAGAATGCTATAAGTGGATCATTTTACATTTATAGGAACAAAGCCCATTTTTGCGAGTTATTTGTGATATGGGGAGGAAAACAGGTATTTCTCAGAGATGAAAGAATCATGGAAGATGATAAAGGTGTAAGGATCTCTAAAATCAGCACCAAGCACTCGTTAAAGGGCTGGCTGGGAAAGATGTTCGTGGAAGACCCAAACTATTCCTCAGACAGGAATTTGAGTCTCTCGTCTTCTTCACCAATTGATACAAATTCCATGAGTTCTCGAAATTACTGGGACCAGAATGTTCATGAACTAGAGAACTACTATGAGGAATTACTTTCATTGAATTTACAGGAAGAAGACTGTGAGCAGGATCAAGATGGTGTCCTTGGAAGTTCAAGTTCAACCCAGTTCAATATTCTGGATCATGCGGATTCAAATATGAATGCTGAGGAAAGAATAGAGCATCTGAGAACTAAAATTGAGGAAGCTCGCAAGACCATCCAGTTGATGAAAGATGAAGCAAAGGGTAGTGCTGAAAGGCAAGCTAAAGCAGAGTGGGCCATTAATTTGTGCAGTCAGCGGACCGAAGAGCTTGAAGCTAAGATAAAAGAAGAGGTTACAATTAGGGAAGAGTTGCAAAAAGAATTAAATTCTGCCAAAGAACACATCCTTGAAATAGTAGGTGATATCGAGGAAAGCAAGATCAAATTAGGTTCACTTCTGGAACTCCAAGCTGAATTATCAAGCAAGCTACAGATTTCCACAGCAGGAAAATCGCGTTTAGAGGCTCAATTGGAGAAGACAGCAAAAACAAGAGAGGGGATGGTGAGAGAAATCGAGGAGCTGAGAAGACAAAGAGAGATTCTTCACCGGAGAATTGAGTTCTGTAAAGATAAAGATGCCATTGGAATGACCGAAAGGTCAACTGAAGTGTCTTGTAGTACAAGAGTGTACACGGCAGAAGAAGTCAGATTGGCCACTGATAGCTTTTCAGAACAAATGAGATTGAGTTCCCGAGTGTATAGAGGACGTATCAACCATATCTCAGTTGCAATACAGATGATCGACTCAGGAAACTGTCTGTCAGAAGATGACTTCCAATCTAAGGTGGAGCTTTTAAGCCATATCCATCACCCTCATCTGATTGCCATAATGGGCTTCTGCCCCGAGCTCAAATGCATTGTCTTTGATTACATGCAGAGCGGTAGCTTAAGTGACAGACTACTTCCTTCCAATTCCAACGAAAGATCCAAAAAAATATGTCGCCCTCTCATGTGGCATGAAAGAATCCGTATAGCTTCAGAGGTATGCTCGGCCTTGTGCTTCCTTCACCAGGCCCAACCTCAGCCCATTTCTCATGGCAAACTCACCCTGTCCAAAATTCTCCTGGATCAAAACCTTGCTGCCAAAGTCACTGGTTTTGGGCTCCACGAATTGGATGAAGCTAGTGGTACCGAGTTGGACATCCGGGCCTTTGGGGCTCTGTTGCTACATATTGTAACCGGGAGGACTTGGGAAGGGCTGATTGAGAAGGCATTGTCAATGGGTAAGGTGGGTCTGGTCCAGATTCTAGACGATAAAGCTGGACAGTGGCCATTGAGCTTGGTTGATGGGCTAGTTGATCTGGCTTTGAGATGTGTAACTCCAAATGGTTCCATTTCAGATGTTAACTTGGGGACAGCCATGGAAGAGCTCGATGAGATCAAGAGGAAAGCAGATGATCTGGTGGTTGGAAATGGAAAGGATGAGGGAGGTATTGAAGGTACAGATGCAGCTAATGAGGACATAGATGATGTGCCAAGAATCTTCATCTGTCCCATCTTGCAGGAAGTGATGAAGAACCCACACGTGGCAGCAGATGGGTTTTCTTACGAGCTAGAGGCCATAGAACAATGGTTAAGAGCAGGACATGATACATCACCAATGACCAACTTGAAGCTGCAGCACCCTTATCTCACTCCTAATCATACTCTTCGCTCTCTAATTCAAGACTGGCAAAGTGAGACCTCAAATGTTTAA | 2550 | 43.41 | MDQDNGKKVHPVKKRFEEAIHWQLLRTAETNRSPTPKRFVENKSMNGKAEKVFVAIGNDLHDGFKTLGWTLRKWKSRPISIVILHVAYNNSMEYVHTPFGKLPASSISEEKVEVLRRYEQEKIDKLLSKYVDFCGKVRAEILKVEKSDEPVHKLIVDLISELGITNLVIGFTFMKSSSWKPKNAISGSFYIYRNKAHFCELFVIWGGKQVFLRDERIMEDDKGVRISKISTKHSLKGWLGKMFVEDPNYSSDRNLSLSSSSPIDTNSMSSRNYWDQNVHELENYYEELLSLNLQEEDCEQDQDGVLGSSSSTQFNILDHADSNMNAEERIEHLRTKIEEARKTIQLMKDEAKGSAERQAKAEWAINLCSQRTEELEAKIKEEVTIREELQKELNSAKEHILEIVGDIEESKIKLGSLLELQAELSSKLQISTAGKSRLEAQLEKTAKTREGMVREIEELRRQREILHRRIEFCKDKDAIGMTERSTEVSCSTRVYTAEEVRLATDSFSEQMRLSSRVYRGRINHISVAIQMIDSGNCLSEDDFQSKVELLSHIHHPHLIAIMGFCPELKCIVFDYMQSGSLSDRLLPSNSNERSKKICRPLMWHERIRIASEVCSALCFLHQAQPQPISHGKLTLSKILLDQNLAAKVTGFGLHELDEASGTELDIRAFGALLLHIVTGRTWEGLIEKALSMGKVGLVQILDDKAGQWPLSLVDGLVDLALRCVTPNGSISDVNLGTAMEELDEIKRKADDLVVGNGKDEGGIEGTDAANEDIDDVPRIFICPILQEVMKNPHVAADGFSYELEAIEQWLRAGHDTSPMTNLKLQHPYLTPNHTLRSLIQDWQSETSNV | 849 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 31292909 | 31296500 | + | CcPI632755_04g015940.1 | Cco04g1594 | 176819 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g1594 | 849 | PANTHER | OS02G0152300 PROTEIN | 52 | 840 | IPR051348 | - | |
Cco04g1594 | 849 | Gene3D | Transferase(Phosphotransferase) domain 1 | 484 | 669 | - | - | |
Cco04g1594 | 849 | Coils | Coil | 323 | 357 | - | - | |
Cco04g1594 | 849 | Coils | Coil | 435 | 476 | - | - | |
Cco04g1594 | 849 | Pfam | U-box domain | 776 | 847 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cco04g1594 | 849 | SUPERFAMILY | RING/U-box | 765 | 847 | - | - | |
Cco04g1594 | 849 | Coils | Coil | 281 | 301 | - | - | |
Cco04g1594 | 849 | ProSiteProfiles | Protein kinase domain profile. | 496 | 829 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco04g1594 | 849 | Pfam | Protein tyrosine and serine/threonine kinase | 516 | 656 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco04g1594 | 849 | Coils | Coil | 372 | 406 | - | - | |
Cco04g1594 | 849 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 774 | 849 | IPR013083 | - | |
Cco04g1594 | 849 | ProSiteProfiles | U-box domain profile. | 775 | 849 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cco04g1594 | 849 | SMART | Ubox_2 | 779 | 842 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cco04g1594 | 849 | CDD | RING-Ubox_WDSUB1-like | 777 | 832 | - | - | |
Cco04g1594 | 849 | SUPERFAMILY | Protein kinase-like (PK-like) | 488 | 727 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g1594 | Cco-Chr4:31292909 | Cco06g0373 | Cco-Chr6:4173892 | 1.70E-73 | dispersed | |
Cco04g1594 | Cco-Chr4:31292909 | Cco02g2156 | Cco-Chr2:34311122 | 3.70E-68 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86766 | PF07714 | PK_Tyr_Ser-Thr | 6.20E-16 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g1594 | - | - | - | 0.0 |