Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1600 ATGAAAGTGGAGAGCCCCGGCAGGAAAGCAAAAGCTGAGACGAACAGTACAAAGCCGTGCGTGTCGTTCTGTGGTGCGCGAAGATATACGGCCGTAGCCGTGACAGGGAATGGTCCACTCCTCCCTGACACGCTTTTGTGCTATTTCCCTCTCATCCTCAACCTTTTACGGCAAAGTTCGGCTGACGAGTTGGAATTTTGCTTCTCCAGAAATGGAGACTTTCACTTCCTTTCAACTGTAGCCTCATTCTCTTTCCGCTACTCATTGGTGGCTTTCCATCTTTCTGAAAAACCAACCCTAACCGCGTTTCCCTATCAAAAAGCAAGGCTAGTTATAGAGGTTGAAATGGCGAAAGAAAAAATCCAGATCAGGAAGATCGATAACGCCACGGCGAGGCAGGTCACTTTCTCCAAGCGTCGGAGGGGACTTTTTAAGAAAGCCAAAGAGCTTTCCGTTTTATGCGATGCCGATGTTGCCCTCATTATCTTCTCCGCCACCGGAAAGCTGTTTGAGTACTCAAGCTCAAGCATGAAGGGAATCATAGAAAGACATAATTTGCACTCTAAGAACCTTCAGAAATTGGAACAACCATCCCTTGAACTACAGCTGGTTGAAAATAGCAATTACACCCGATTAAACAAGGAAATTGCTGACAAAACTCATCAGCTAAGGCAGATGAGGGGAGAAGAACTCCAAACACTGAATATAGAGGAATTGCAGAAGCTAGAGAAGTCACTGGAGTCTGGATTGAGTCGTGTGATGGAGAAAAAGGGTGAACGGATCATGAAAGAGATCACCGACCTTCAAAGAAAGTCGGCCGAGTTGATGGATGAGAATAAGCGACTTAAACAACAAGCGGAGAAAATGAACGCCGTGAGGCACCTGGGCGTCGACCCCGAGATTTTGGTCGTGGAAGATGGCCAATCTTCGAACTCCGTCACTGAAGCTGGTGTCTCCAACTCCAATGGCCCGCCTCAAGATCTGGAAAGCTCAGACACATCTCTGAAATTAGGTGAATCCAATTGGTTGCAGGCTGCCGTATTCCGGGTGATGGTGATGGTGATGGAACAAGAAGATGAACAGCTACCGATAAATGAATCCAATAAAGTGGACCTTCAAGCAGAGGCCCGCAAAGGCAACAACGAGTCAAATCTCTACTCGAAAACACGTCTTCGTCCTTATGTAGTTAAAGTGGAACGAGCAGAGGCAAAATCAAAACCAGATCAGTCTGATTTATGGGCTCCTTTAGCTGATGAAGGGTGGAGGCCTTGTGTTGCTTCTTCAAAAGCTTCCTCACTACCGGGGAGCTCTGAAGGATATATTCAGGTGTTTCTTGATGGAGGGCTGAACCAGCAAAGAATGGGAATATGTGATGCAGTTGCAGTTGCAAAAATTCTAAATGCAACCCTTGTGATTCCCCACCTTGAAATTAATCCTGTCTGGAAAGATTCAAGTTCTTTCGTCGATATATTTGATGTGGATCACTTTATTAACGTATTGAAGGATGACATTTCTATAGTTAAAGAGTTGCCAGCTGACTTTTCTTGGAGTACTAGGGAATATTATGCTACAGCCATTCGGGCTACTAGAGTCAAAACAGCACCTGTTCATGCCTCAGCCAACTGGTATCTGGACAATGTTTTACCCGTATTACAGAGCTACGGTATTGCTGCCATTGCACCCTTCTCGCATCGTCTAGCTTTTGAGAACTTGCCTGATGAGATACAAAGGTTGCGCTGTAAGGTCAACTTTCAAGCATTAACTTTTGTTCCCCATATCCGAGAACTAGGAAATGCTCTTATCAGTCGGCTGCGGTATCCTTTGAATAAGGAGTCAAAGAAGGCTAACTACCTAAGTATGACCATTGATGCAAATGAACAAGGTCCATTGAAGTTTGTTGTCCTACACCTTCGATTTGACAAGATTGTTAGTGAGCTACCACCATTATCTGCTCAATTAAGCAACTGGTCGAATTTATGGGTCCCCATTGCAACTTCAGCGTATTTAAGGTTTTTACTTAACCAGTTCATCGTCATCCTAGGTTTTAAGAGTCTAAGGACAGGGGTACTGGCCAATACGACTGGCCATCATGAAATCAAATTGAATGACTGGAACTTTGGATTGGACATGGCAGCTCATTCAGCCTGCGATTTTGGTGGAGGAAAGGCTGAAAAACTTGCTTTGGCCAAATATCGTCAAGTGCTCTGGCAGGGAAGGGTCCTTAACTCTCAGTTCACGGATGAGGAGTTGCGGAGTCAGGGTCGTTGCCCTTTGACACCTGAAGAGATCGGTTTGCTACTGGCTGCTTTGGGTTTTGACAACAATACCCGCCTATATTTGGCCTCCCACAAGGTATATGGTGGGGAAGCTAGGATTTTGACTTTGCGAAGTCTTTTCCCATTAATGGAAGATAAGAAGAGTCTCACTTCTGGAAATGAACTAGCCCAAATCAAAGGAAAGGCTTCTTTGCTAGCTGCGGTTGACTACTACGTAAGCATGCACAGTGACATTTTTATCTCGGCTTCTCCTGGAAATATGCATAATGCAATGGTGGGACATCGCACGTACGAGAACTTGAAGACCATAAGACCAAACATGGCATTGTTGGGACAACTTTTCATGAACAAAAGCATCATTTGGTCAGACTTTCAGCAGGCCACAGTAGAAGGCCACAAAAACAGACAAGGACAAACAAGGTTGAGAAAGCCAAAGCAGTCAATATACACATATCCAGCTCCTGACTGTGTTTGCCACTCTTGA 2760 45.04 MKVESPGRKAKAETNSTKPCVSFCGARRYTAVAVTGNGPLLPDTLLCYFPLILNLLRQSSADELEFCFSRNGDFHFLSTVASFSFRYSLVAFHLSEKPTLTAFPYQKARLVIEVEMAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSSSMKGIIERHNLHSKNLQKLEQPSLELQLVENSNYTRLNKEIADKTHQLRQMRGEELQTLNIEELQKLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELMDENKRLKQQAEKMNAVRHLGVDPEILVVEDGQSSNSVTEAGVSNSNGPPQDLESSDTSLKLGESNWLQAAVFRVMVMVMEQEDEQLPINESNKVDLQAEARKGNNESNLYSKTRLRPYVVKVERAEAKSKPDQSDLWAPLADEGWRPCVASSKASSLPGSSEGYIQVFLDGGLNQQRMGICDAVAVAKILNATLVIPHLEINPVWKDSSSFVDIFDVDHFINVLKDDISIVKELPADFSWSTREYYATAIRATRVKTAPVHASANWYLDNVLPVLQSYGIAAIAPFSHRLAFENLPDEIQRLRCKVNFQALTFVPHIRELGNALISRLRYPLNKESKKANYLSMTIDANEQGPLKFVVLHLRFDKIVSELPPLSAQLSNWSNLWVPIATSAYLRFLLNQFIVILGFKSLRTGVLANTTGHHEIKLNDWNFGLDMAAHSACDFGGGKAEKLALAKYRQVLWQGRVLNSQFTDEELRSQGRCPLTPEEIGLLLAALGFDNNTRLYLASHKVYGGEARILTLRSLFPLMEDKKSLTSGNELAQIKGKASLLAAVDYYVSMHSDIFISASPGNMHNAMVGHRTYENLKTIRPNMALLGQLFMNKSIIWSDFQQATVEGHKNRQGQTRLRKPKQSIYTYPAPDCVCHS 919
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31320580 31340112 - CcPI632755_04g016000.1 Cco04g1600 176825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1600 919 Gene3D - 128 197 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco04g1600 919 FunFam Transcription factor, MADS-box 128 198 - -
Cco04g1600 919 Pfam K-box region 206 286 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco04g1600 919 SUPERFAMILY SRF-like 118 198 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco04g1600 919 ProSiteProfiles MADS-box domain profile. 116 176 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco04g1600 919 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 125 172 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco04g1600 919 CDD O-FucT_plant 440 862 IPR024709 -
Cco04g1600 919 Pfam GDP-fucose protein O-fucosyltransferase 440 640 IPR019378 -
Cco04g1600 919 Pfam GDP-fucose protein O-fucosyltransferase 706 856 IPR019378 -
Cco04g1600 919 ProSiteProfiles K-box domain profile. 202 292 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco04g1600 919 Coils Coil 209 229 - -
Cco04g1600 919 CDD MADS_MEF2_like 117 192 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cco04g1600 919 MobiDBLite consensus disorder prediction 307 333 - -
Cco04g1600 919 PRINTS MADS domain signature 138 153 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco04g1600 919 PRINTS MADS domain signature 153 174 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco04g1600 919 PRINTS MADS domain signature 118 138 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco04g1600 919 PANTHER O-FUCOSYLTRANSFERASE 2-RELATED 339 641 IPR052272 -
Cco04g1600 919 SMART madsneu2 116 175 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco04g1600 919 Coils Coil 236 256 - -
Cco04g1600 919 Coils Coil 258 292 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1600 Cco-Chr4:31320580 Cco08g0089 Cco-Chr8:1419938 2.40E-76 dispersed
Cco10g0973 Cco-Chr10:21076500 Cco04g1600 Cco-Chr4:31320580 2.00E-13 dispersed
Cco10g1206 Cco-Chr10:24739069 Cco04g1600 Cco-Chr4:31320580 4.20E-23 dispersed
Cco11g1526 Cco-Chr11:28118774 Cco04g1600 Cco-Chr4:31320580 2.20E-18 dispersed
Cco05g2856 Cco-Chr5:36197197 Cco04g1600 Cco-Chr4:31320580 1.20E-78 transposed
Cco09g1786 Cco-Chr9:30526242 Cco04g1600 Cco-Chr4:31320580 7.20E-20 transposed
Cco10g0939 Cco-Chr10:20524499 Cco04g1600 Cco-Chr4:31320580 8.70E-48 transposed
Cco04g1600 Cco-Chr4:31320580 Cco08g1323 Cco-Chr8:25087903 6.90E-185 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59097 PF10250 O-FucT 2.50E-33 CL0113 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1600 - - - 0.0