Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco04g1608 | ATGGCTGATAGTTTTTACTGTACAGAGAATGCCAATATTTGTTTTGATGATCAATTTGATTGTAATGCTACAAATAATGAGTTTGAACGATTCTCAATTTCTCTGCCCCACCGAAGAACCCGTGACCCGAATGTTGATTGTCTCGGATCCGAGACTTTTCTGGGCTCTCCCTTAGAGAGTGAAGAGAGAATTAGAAGAATGGTTGAGAAAGAGATTGAACATTTGCCAACTCATGATTATCTTAAGAGAATGCTCTCTGGGGATTTGGATTTGAAGTTTAGAAGAGACGCTGTTGATTGGATTTGGAAGGCTCATGCCCATTACAGCTTTGGACCTCTGAGTCTTTGTTTATCTATGAACTACTTGGACCGTTTCCTCTCAGTTTATCATTTGCCTATGGATAAAAGCTGGACTGTGCAGCTCCTGTCAGTAGCTTGTGTGTCTTTAGCAGCAAAAATGGAGGAGACAGAAGTGCCTCTTCCCATAGATTTACAGGTTGAGGAACCTAAGTTTGTGTTTGAAGCAAAAACCATACAAAGAATGGAGCTTTTAGTTCTAAGCAGGTTGAAATGGAAGATGCAAGCCATAACTCCATTTTCTTTCATTGATTATTTCCTCAGTAAGATAACTGTTGAGCAACACATACCAAGCCTATTCTTCTCTAAATCTTCACAACTCATTCTGAGCACAATTAAAGGCATTGACTTCTTGGAATTCAGGCCCTCTGAAATTGCTTTGGCTGTGGCAATTTCCATTTCAGGAGAATTACAAGCACCAGATATGAATAAGGCAATCCTTTCTTTTCCATATATGGAGAAAGAAAGAGTCGTGAAGTGTATCGAACTGATTAGAGATTTGTCATTGATTAATAATATGTATGGAAATTCATTGGCTGGTAATGTTGGTGGTTCAGTTCCTCAGAGTCCAGTTGGGGTTTTGGATGCAGCTTGTTTGAGTTACAAAACAGAAGAATTATTAACTGCAGGCTCATGTGGTAATTCTTCTTCTTCTCATGACAGTCCAAACAGCAAGAGGAGGAGACAAGATAGACCATCATCAAATGATGATTCAAGTCCATCCAGTCCTGTCAAATGA | 1095 | 39.36 | MADSFYCTENANICFDDQFDCNATNNEFERFSISLPHRRTRDPNVDCLGSETFLGSPLESEERIRRMVEKEIEHLPTHDYLKRMLSGDLDLKFRRDAVDWIWKAHAHYSFGPLSLCLSMNYLDRFLSVYHLPMDKSWTVQLLSVACVSLAAKMEETEVPLPIDLQVEEPKFVFEAKTIQRMELLVLSRLKWKMQAITPFSFIDYFLSKITVEQHIPSLFFSKSSQLILSTIKGIDFLEFRPSEIALAVAISISGELQAPDMNKAILSFPYMEKERVVKCIELIRDLSLINNMYGNSLAGNVGGSVPQSPVGVLDAACLSYKTEELLTAGSCGNSSSSHDSPNSKRRRQDRPSSNDDSSPSSPVK | 364 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 31411913 | 31413790 | + | CcPI632755_04g016080.1 | Cco04g1608 | 176833 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco04g1608 | 364 | Pfam | Cyclin, N-terminal domain | 65 | 193 | IPR006671 | - | |
| Cco04g1608 | 364 | CDD | CYCLIN_AtCycD-like_rpt1 | 94 | 191 | - | - | |
| Cco04g1608 | 364 | ProSitePatterns | Cyclins signature. | 94 | 125 | IPR048258 | - | |
| Cco04g1608 | 364 | FunFam | D2/4-type cyclin | 77 | 189 | - | - | |
| Cco04g1608 | 364 | SUPERFAMILY | Cyclin-like | 59 | 193 | IPR036915 | - | |
| Cco04g1608 | 364 | PANTHER | CYCLINS | 61 | 282 | IPR039361 | GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER) | |
| Cco04g1608 | 364 | FunFam | D6-type cyclin | 190 | 281 | - | - | |
| Cco04g1608 | 364 | SUPERFAMILY | Cyclin-like | 178 | 306 | IPR036915 | - | |
| Cco04g1608 | 364 | MobiDBLite | consensus disorder prediction | 328 | 364 | - | - | |
| Cco04g1608 | 364 | CDD | CYCLIN_AtCycD-like_rpt2 | 196 | 283 | - | - | |
| Cco04g1608 | 364 | Gene3D | - | 65 | 282 | - | - | |
| Cco04g1608 | 364 | Pfam | Cyclin, C-terminal domain | 196 | 287 | IPR004367 | - | |
| Cco04g1608 | 364 | SMART | Cyclin_C_2 | 196 | 307 | IPR004367 | - | |
| Cco04g1608 | 364 | SMART | cyclin_7 | 99 | 187 | IPR013763 | - | |
| Cco04g1608 | 364 | Gene3D | - | 77 | 194 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco04g1463 | Cco-Chr4:30072217 | Cco04g1608 | Cco-Chr4:31411913 | 1.20E-36 | dispersed | |
| Cco04g1608 | Cco-Chr4:31411913 | Cco08g1802 | Cco-Chr8:29125670 | 7.70E-47 | dispersed | |
| Cco04g0994 | Cco-Chr4:25537975 | Cco04g1608 | Cco-Chr4:31411913 | 3.40E-21 | transposed | |
| Cco09g2265 | Cco-Chr9:36928527 | Cco04g1608 | Cco-Chr4:31411913 | 8.40E-48 | transposed | |
| Cco10g0985 | Cco-Chr10:21305569 | Cco04g1608 | Cco-Chr4:31411913 | 8.80E-53 | transposed | |
| Cco04g1608 | Cco-Chr4:31411913 | Cco08g1306 | Cco-Chr8:24875559 | 2.20E-78 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco04g1608 | K18810 | - | csv:101209378 | 568.926 |