Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1671 ATGGCGGGTCAACCGTCTGATTCTTCCCCTCTTATTCCACCGGCGCCGATCAGCGACCCCAGTGAGATCGACCTCGAAGCCGGCCAAGGGGAGCAAATTCAGTGTAGAATTTGCCTCGAGACCGATGGTAGGGACTTTATTGCTCCTTGCAAATGCAAAGGAACGTCGAAGTATGTTCATAGAGAATGTCTGGATCATTGGCGAGCCGTGAAGGAAGGGTTTGCTTTTGCACACTGTACCACATGTAAGGCCCCTTACCATTTGAGAGTACATGCTGTTGCTGACAGGAAATGGCGAACCCTGAAATTCCGATTTTTTGTGACTAGAGACATTATATTTATATTTTTGGCGGTTCAGCTTGTCATTGCTTCTCTGGGATATTTGACATATTTTATAGATGGTTGTCAACATTACTGGCTTCGTCTTACTTGGGGTTTCGATAGCAAAATTAGTTTTTATTACATATGCGGAGCTTTATTATTTTTTGCATTGCTCGGCTTATCTGGATGCTTCATCACTTGTTATGATCGGAGAGTTAGGAGTGATTTGGCTCAACCATGTAGAGAATTGTGTCTATGTTGTTGCCACCCTGGACTATGTGCTGACTGTCATTTACCTGGCACTCTTTGTATGTGGACTGACTGTACCACTTGCTTTGAAAGTTGTGGAAGCATAGCAACTGAATGTGGATGCCTAGGAGGTGCTGGTGAAGCAGGACTGCCGTTATTATTTATAATGGCCTTGATTGTTCTTGGTTTGTTCACAGTGATTGGTATATTCTACAGTGTCTTGGTGGCTACCATGGTTGGACAACGAATATGGCAACGACACTATCACATACTTGCAAAAAGAATGCTAACAAAGGAATATGTTGTGGAAGATGTAGATGGGGAGATGACAGGATCTGACTGGTTACCTCCACCACTTCCAGCAGAGCACGTTCAACAGCTGAAAACTCTTGGCCTTTTATGA 972 44.03 MAGQPSDSSPLIPPAPISDPSEIDLEAGQGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYHLRVHAVADRKWRTLKFRFFVTRDIIFIFLAVQLVIASLGYLTYFIDGCQHYWLRLTWGFDSKISFYYICGALLFFALLGLSGCFITCYDRRVRSDLAQPCRELCLCCCHPGLCADCHLPGTLCMWTDCTTCFESCGSIATECGCLGGAGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTGSDWLPPPLPAEHVQQLKTLGLL 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31929833 31934266 - CcPI632755_04g016710.1 Cco04g1671 176896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1671 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 95 IPR013083 -
Cco04g1671 323 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 13 322 - -
Cco04g1671 323 CDD RING_CH-C4HC3_MARCH 35 83 - -
Cco04g1671 323 ProSiteProfiles Zinc finger RING-CH-type profile. 27 89 IPR011016 GO:0008270(InterPro)
Cco04g1671 323 SMART ringv_2 34 83 IPR011016 GO:0008270(InterPro)
Cco04g1671 323 Pfam RING-variant domain 35 82 IPR011016 GO:0008270(InterPro)
Cco04g1671 323 SUPERFAMILY RING/U-box 31 87 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1671 Cco-Chr4:31929833 Cco06g1241 Cco-Chr6:22374794 1.50E-54 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1671 - - - 0.0