Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1688 ATGAATAAATCACCCCAAGCAAAGGAAGAATCTAAAAGTGCGGTTCCTTGTGAAGAAGTTCAACAAAGAACGCGCTCTTCTCGTGAAGTTAGCTTGGTGGAAGCGAGAGAGAACGAGAAGAAGTTCCACGGCGGAGCTGAATTGCCGGAACTGAAGAATCGGAAGCTGCTGCAGAGCGATTTGTTGTTGTCTGAAGAAGCCATGACGGGCAGAGGGTCATCGGGAAGGACGCCGACGTGGAAAGAAAGGGAGAACAATAAGAGGAGAGAGAGGCGACGGAGAGCCATTGCTGCTAAGATCTACACTGGTCTCAGAGCTCAGGGGAACTATAAGCTTCCTAAGCACTGTGACAACAACGAGGTCTTAAAGGCACTCTGTAATGAAGCTGGTTGGGTGGTTGAGGAAGATGGCACCACCTATCGCAAGGGATGCAAGCCACCTCCGATTGATATTGGCACTTCTGCAAATATGAGTGCCTGTTCTTCTCTTCAACCAAGCCCACAATCGTCATGCTTCCCCAGTCCTGTACCATCCTACCATGCCAGTCCTTCTTCATCCTCTTTTCCAAGCCCAACTCGATTCGACGGGAATCCATCTTCTTATCTTCTGCCATTCCTTCAAAATATATCCTCTATACCTGCTAATCTCCCTCCTCTCAGAATATCGAACAGTGCACCTGTCACACCACCTCTTTCTTCCCCGACGTCAAGAGGTTCGAAGCGAAAGCCCGACTGGGAGTCCATTCCAAATAGCTATGTAACCTCTTTCCGCCATCCCCTCTTTGCTGTCTCTGCTCCATCAAGTCCTACAAGATGCCACCATCTTACACCCGCAACAATTCCAGAATGTGATGAGTCTGATGCTTCAACTGTAGACTCTGGCCGCTGGGTCAGTTTCCAGACTGTGGCACCTTCTGTTGCTCCTCCTTCCCCTACATTTAATCTGATGAAACCAGTTAGTCAACAAAACTCTCTCCAAGATGCAGTTGACAGACATGGAGCAATGGGCTGGGGTGCTACATCTGATAGGGGACGAGGCTCTGAGTTTGAATTTGAGAAATTTGAGAGTGGCACAGTGAAGCCATGGGAGGGTGAGAGAATTCATGAGGTTGGGGTGGATGATTTGGAGCTTACTCTTGGGGGTGGGAAGGCCCGTGGTTAA 1161 49.27 MNKSPQAKEESKSAVPCEEVQQRTRSSREVSLVEARENEKKFHGGAELPELKNRKLLQSDLLLSEEAMTGRGSSGRTPTWKERENNKRRERRRRAIAAKIYTGLRAQGNYKLPKHCDNNEVLKALCNEAGWVVEEDGTTYRKGCKPPPIDIGTSANMSACSSLQPSPQSSCFPSPVPSYHASPSSSSFPSPTRFDGNPSSYLLPFLQNISSIPANLPPLRISNSAPVTPPLSSPTSRGSKRKPDWESIPNSYVTSFRHPLFAVSAPSSPTRCHHLTPATIPECDESDASTVDSGRWVSFQTVAPSVAPPSPTFNLMKPVSQQNSLQDAVDRHGAMGWGATSDRGRGSEFEFEKFESGTVKPWEGERIHEVGVDDLELTLGGGKARG 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32057722 32059757 + CcPI632755_04g016880.1 Cco04g1688 176913

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1688 386 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 73 385 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
Cco04g1688 386 MobiDBLite consensus disorder prediction 62 91 - -
Cco04g1688 386 MobiDBLite consensus disorder prediction 222 238 - -
Cco04g1688 386 MobiDBLite consensus disorder prediction 77 91 - -
Cco04g1688 386 MobiDBLite consensus disorder prediction 1 48 - -
Cco04g1688 386 Pfam BES1/BZR1 plant transcription factor, N-terminal 73 196 IPR008540 -
Cco04g1688 386 MobiDBLite consensus disorder prediction 222 246 - -
Cco04g1688 386 MobiDBLite consensus disorder prediction 12 48 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1688 K14503 - - csv:101216171 579.326
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0709 Cco-Chr3:7319914 Cco04g1688 Cco-Chr4:32057722 3.10E-55 transposed
Cco07g1090 Cco-Chr7:24443012 Cco04g1688 Cco-Chr4:32057722 1.80E-50 transposed
Cco04g1688 Cco-Chr4:32057722 Cco08g1711 Cco-Chr8:28451073 1.20E-87 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco08g1711 . 75 384 BZR Transcription Factor Family AT1G75080 60.6 1.4e-87 320.1
Cco04g1688 . 95 386 BZR Transcription Factor Family AT1G75080 59.2 1.3e-80 297.0
Cco08g1711 . 75 385 BZR Transcription Factor Family AT1G19350 59.1 7.8e-86 314.3
Cco04g1688 . 95 384 BZR Transcription Factor Family AT1G19350 59.5 4.6e-78 288.5
Cco04g1688 . 73 386 BZR Transcription Factor Family AT3G50750 57.7 2.4e-77 285.8
Cco08g1711 . 75 379 BZR Transcription Factor Family AT3G50750 50.5 3.5e-60 228.8
Cco07g1090 . 77 325 BZR Transcription Factor Family AT4G18890 54.2 9.5e-50 193.7
Cco03g0709 . 80 327 BZR Transcription Factor Family AT4G18890 51.8 5.2e-48 188.0
Cco07g1090 . 1 325 BZR Transcription Factor Family AT1G78700 73.1 2.8e-117 418.7
Cco03g0709 . 1 327 BZR Transcription Factor Family AT1G78700 67.8 1.0e-103 373.6
Cco04g1688 . 95 267 BZR Transcription Factor Family AT4G36780 79.1 3.9e-64 241.9
Cco08g1711 . 107 278 BZR Transcription Factor Family AT4G36780 59.9 1.8e-40 163.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009316 0 1 1 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59105 PF05687 BES1_N 2.60E-64 No_clan Cco TF