Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1688 ATGAATAAATCACCCCAAGCAAAGGAAGAATCTAAAAGTGCGGTTCCTTGTGAAGAAGTTCAACAAAGAACGCGCTCTTCTCGTGAAGTTAGCTTGGTGGAAGCGAGAGAGAACGAGAAGAAGTTCCACGGCGGAGCTGAATTGCCGGAACTGAAGAATCGGAAGCTGCTGCAGAGCGATTTGTTGTTGTCTGAAGAAGCCATGACGGGCAGAGGGTCATCGGGAAGGACGCCGACGTGGAAAGAAAGGGAGAACAATAAGAGGAGAGAGAGGCGACGGAGAGCCATTGCTGCTAAGATCTACACTGGTCTCAGAGCTCAGGGGAACTATAAGCTTCCTAAGCACTGTGACAACAACGAGGTCTTAAAGGCACTCTGTAATGAAGCTGGTTGGGTGGTTGAGGAAGATGGCACCACCTATCGCAAGGGATGCAAGCCACCTCCGATTGATATTGGCACTTCTGCAAATATGAGTGCCTGTTCTTCTCTTCAACCAAGCCCACAATCGTCATGCTTCCCCAGTCCTGTACCATCCTACCATGCCAGTCCTTCTTCATCCTCTTTTCCAAGCCCAACTCGATTCGACGGGAATCCATCTTCTTATCTTCTGCCATTCCTTCAAAATATATCCTCTATACCTGCTAATCTCCCTCCTCTCAGAATATCGAACAGTGCACCTGTCACACCACCTCTTTCTTCCCCGACGTCAAGAGGTTCGAAGCGAAAGCCCGACTGGGAGTCCATTCCAAATAGCTATGTAACCTCTTTCCGCCATCCCCTCTTTGCTGTCTCTGCTCCATCAAGTCCTACAAGATGCCACCATCTTACACCCGCAACAATTCCAGAATGTGATGAGTCTGATGCTTCAACTGTAGACTCTGGCCGCTGGGTCAGTTTCCAGACTGTGGCACCTTCTGTTGCTCCTCCTTCCCCTACATTTAATCTGATGAAACCAGTTAGTCAACAAAACTCTCTCCAAGATGCAGTTGACAGACATGGAGCAATGGGCTGGGGTGCTACATCTGATAGGGGACGAGGCTCTGAGTTTGAATTTGAGAAATTTGAGAGTGGCACAGTGAAGCCATGGGAGGGTGAGAGAATTCATGAGGTTGGGGTGGATGATTTGGAGCTTACTCTTGGGGGTGGGAAGGCCCGTGGTTAA 1161 49.27 MNKSPQAKEESKSAVPCEEVQQRTRSSREVSLVEARENEKKFHGGAELPELKNRKLLQSDLLLSEEAMTGRGSSGRTPTWKERENNKRRERRRRAIAAKIYTGLRAQGNYKLPKHCDNNEVLKALCNEAGWVVEEDGTTYRKGCKPPPIDIGTSANMSACSSLQPSPQSSCFPSPVPSYHASPSSSSFPSPTRFDGNPSSYLLPFLQNISSIPANLPPLRISNSAPVTPPLSSPTSRGSKRKPDWESIPNSYVTSFRHPLFAVSAPSSPTRCHHLTPATIPECDESDASTVDSGRWVSFQTVAPSVAPPSPTFNLMKPVSQQNSLQDAVDRHGAMGWGATSDRGRGSEFEFEKFESGTVKPWEGERIHEVGVDDLELTLGGGKARG 386
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 32057722 32059757 + CcPI632755_04g016880.1 Cco04g1688 176913
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1688 386 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 73 385 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
Cco04g1688 386 MobiDBLite consensus disorder prediction 62 91 - -
Cco04g1688 386 MobiDBLite consensus disorder prediction 222 238 - -
Cco04g1688 386 MobiDBLite consensus disorder prediction 77 91 - -
Cco04g1688 386 MobiDBLite consensus disorder prediction 1 48 - -
Cco04g1688 386 Pfam BES1/BZR1 plant transcription factor, N-terminal 73 196 IPR008540 -
Cco04g1688 386 MobiDBLite consensus disorder prediction 222 246 - -
Cco04g1688 386 MobiDBLite consensus disorder prediction 12 48 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0709 Cco-Chr3:7319914 Cco04g1688 Cco-Chr4:32057722 3.10E-55 transposed
Cco07g1090 Cco-Chr7:24443012 Cco04g1688 Cco-Chr4:32057722 1.80E-50 transposed
Cco04g1688 Cco-Chr4:32057722 Cco08g1711 Cco-Chr8:28451073 1.20E-87 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59105 PF05687 BES1_N 2.60E-64 No_clan Cco TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1688 K14503 - csv:101216171 579.326