Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1694 ATGGCGGACATGAATCTCCGACCCGACGGCGACAATTCACAACTCATTTCCCATCTCTACAACCCTGAAATTTACACCCAAATGTTACCCCAACAAGGTACGGCGGAGGGGAATAAGCCGCCGAAGCGGCGGAGGAGGAGGAGCAAAGCGAAGGAGGGGGGCGGAGCCGGGGCGGCGGGGTTGAAGAAGAGGAAGCTGAGTTCAGAGCAAGTGAAGCTTTTGGAGATAAATTTTGGCAACGAACACAAATTGGAATCGGAGAGGAAAGATCGGTTGGCTTCTGAATTGGGACTTGATCCACGGCAAGTCGCCGTCTGGTTTCAGAACCGCCGTGCACGGTGGAAGAATAAGAAGGTGGAAGAGGAGTATTCCACTCTTAAAAAAGCTCATGATTCTGTTCTTCGCCAAAATTCCCATCTTGAATCTGAGTTGGTGAAAGTGAGGGAGCAATTGAAAGAAGCAAAAAATGAAATTAAAAAATTGGGAGAAGGAAGCGAGAGAATTTCAAGCAATAACAGTCCGAGCTCTTCGGTAACAATGGAAGCAGTGGAAGCAGTGCCTTTGGGAGAGCTATTTTTGGAAGAGTATGAAGATGTATTCTATTGCATGCAAGACAACAATTACAATCAAGGAATGGACTGGCTTAATCTTAATTATATGTAG 663 46.46 MADMNLRPDGDNSQLISHLYNPEIYTQMLPQQGTAEGNKPPKRRRRRSKAKEGGGAGAAGLKKRKLSSEQVKLLEINFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKVEEEYSTLKKAHDSVLRQNSHLESELVKVREQLKEAKNEIKKLGEGSERISSNNSPSSSVTMEAVEAVPLGELFLEEYEDVFYCMQDNNYNQGMDWLNLNYM 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32120647 32122601 + CcPI632755_04g016940.1 Cco04g1694 176919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1694 220 CDD homeodomain 64 118 IPR001356 GO:0003677(InterPro)
Cco04g1694 220 ProSiteProfiles 'Homeobox' domain profile. 57 117 IPR001356 GO:0003677(InterPro)
Cco04g1694 220 MobiDBLite consensus disorder prediction 1 65 - -
Cco04g1694 220 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 43 173 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Cco04g1694 220 SUPERFAMILY Homeodomain-like 62 126 IPR009057 -
Cco04g1694 220 ProSitePatterns 'Homeobox' domain signature. 92 115 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cco04g1694 220 FunFam homeobox-leucine zipper protein ATHB-40 56 125 - -
Cco04g1694 220 Gene3D - 58 129 - -
Cco04g1694 220 PRINTS Lambda-repressor HTH signature 97 113 IPR000047 GO:0003677(InterPro)
Cco04g1694 220 PRINTS Lambda-repressor HTH signature 88 97 IPR000047 GO:0003677(InterPro)
Cco04g1694 220 MobiDBLite consensus disorder prediction 10 34 - -
Cco04g1694 220 Pfam Homeodomain 63 116 IPR001356 GO:0003677(InterPro)
Cco04g1694 220 Coils Coil 109 171 - -
Cco04g1694 220 SMART HOX_1 60 121 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1694 Cco-Chr4:32120647 Cco07g0966 Cco-Chr7:22358800 1.60E-39 dispersed
Cco04g1694 Cco-Chr4:32120647 Cco10g1941 Cco-Chr10:32971895 1.70E-20 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59106 PF00046 Homeodomain 2.60E-16 CL0123 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1694 K09338 - csv:101216890 334.724