Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1695 ATGGCGGACCATTCCGATGAACAACACTCCTTCAGGACAATTGCCACTGCTTTCATTCCGTTCATTGGGGACGATGATTCTGATGATTTGGGGCCCGAGTTCGTCTTCAACATCGAACCCACTTTGCTTATTGACCCTCATTGTTTGAAGATTGGTGAAGTTATTGGGGAAGGTTCATGTTCCATTGTTTATGAAGGACTGTACGATTGTCAGCCTGTTGCCGTGAAGATTATGCAGCCAATTAGAACATCATCTATAAGTCCTGAAAAGAAGGAGAGATTTCAGAGGGAGGTTATGTTGCTATCAAGAGTGAATCATGAGAACGTTATTCAGTTCATTGGTGCTTCCGTAGAGCCGACATTGATGATAATCACTGAGCTTATGAGAGGTGGAACACTCCAGAAGTACTTATGGAGCATCCGGCCAGAGACCCCAGATTTGAAGCTTTCCTTAAGTCTTGCTCTAGATCTATCACGAGTAATGGCATACTTGCATTCAAATGGCATCATTCATCGCGACTTAAAGCCAAGCAATCTACTGCTAACAGAAGACAAGCAACGGGTTAAGCTGGCCGACTTTGGGTTGGCTAGAGAGGAAATATCTGGTGAAATGACTACTGAGGCTGGTACTTACCGTTGGATGGCCCCTGAGCTATTTAGCATTGAACCATTGCCTGTTGGAGGTAAGAAATGCTATGACCACAAGGCAGATGTCTACAGCTTCTCAATAATTCTTTGGGAATTGCTGACAAACAAGACTCCATTCAAAGGCAGGAATAATGTAATGGTGGCATATGCCACAGCCAAGAACATAAGACCAAGTCTTGAGGAAATCCCAGAAGATATTGCCCCTCTCTTGCAGTCATGCTGGGCTGAGGATCCCAATGGCCGTCCAGAATTTACAGAAGTCACAGATTCTCTTTGTAATCTTCTTCAATCATTTGTGTTAAAAGAATCTTTACTTCCTAACATGGACGACAAAACAGAGGAGGAGGAGGTCGAGTGTGCATCAGAGACATCGTCTTCTCAAAGCAAGAGAGGGCCAAAGGCTGGAAGACATAGAAACTCTTCATTCTGCCTCAAATGTTGCCGCAACTTCTGCTTGTTCATAGGAGATGGGTTGTTATCCCCAGATCCAGTTTTGTAA 1146 44.15 MADHSDEQHSFRTIATAFIPFIGDDDSDDLGPEFVFNIEPTLLIDPHCLKIGEVIGEGSCSIVYEGLYDCQPVAVKIMQPIRTSSISPEKKERFQREVMLLSRVNHENVIQFIGASVEPTLMIITELMRGGTLQKYLWSIRPETPDLKLSLSLALDLSRVMAYLHSNGIIHRDLKPSNLLLTEDKQRVKLADFGLAREEISGEMTTEAGTYRWMAPELFSIEPLPVGGKKCYDHKADVYSFSIILWELLTNKTPFKGRNNVMVAYATAKNIRPSLEEIPEDIAPLLQSCWAEDPNGRPEFTEVTDSLCNLLQSFVLKESLLPNMDDKTEEEEVECASETSSSQSKRGPKAGRHRNSSFCLKCCRNFCLFIGDGLLSPDPVL 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32125895 32129410 + CcPI632755_04g016950.1 Cco04g1695 176920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1695 381 SUPERFAMILY Protein kinase-like (PK-like) 42 320 IPR011009 -
Cco04g1695 381 Gene3D Phosphorylase Kinase; domain 1 38 129 - -
Cco04g1695 381 SMART serkin_6 49 314 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g1695 381 Pfam Protein tyrosine and serine/threonine kinase 49 307 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g1695 381 CDD STKc_MAP3K-like 55 307 - -
Cco04g1695 381 MobiDBLite consensus disorder prediction 327 355 - -
Cco04g1695 381 PRINTS Tyrosine kinase catalytic domain signature 236 258 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g1695 381 PRINTS Tyrosine kinase catalytic domain signature 163 181 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g1695 381 PRINTS Tyrosine kinase catalytic domain signature 278 300 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g1695 381 PRINTS Tyrosine kinase catalytic domain signature 125 138 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g1695 381 PANTHER SERINE-THREONINE PROTEIN KINASE 43 309 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cco04g1695 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g1695 381 ProSiteProfiles Protein kinase domain profile. 49 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g1695 381 Gene3D Transferase(Phosphotransferase) domain 1 130 352 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1695 Cco-Chr4:32125895 Cco10g1367 Cco-Chr10:26684207 1.30E-81 dispersed
Cco04g1695 Cco-Chr4:32125895 Cco06g1942 Cco-Chr6:29656891 1.10E-83 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86769 PF07714 PK_Tyr_Ser-Thr 2.30E-54 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1695 - - - 0.0