Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1697 ATGGGGACTGGGGAAGAGGGCACGCCTTCTAAAACTTCCAAACCTCCCTCTTCATCCCAGGAAATAGCTCCGACACCTTCATATCCTGATTGGTCAAGCTCAATGCAGGCTTATTATGGTGCTGGTGCTACTCCACCTCCCTTCTTTGCATCTACTGTTGCTTCTCCAACTCCGCACCCTTACCTCTGGGGAGGTCAGCATCCTTTGATGCCACCTTACGGGACTCCAGTACCTTATCCAGCTATATATCCTCCTGGGGGAGTTTATGCCCATCCCAATATCACCGTGACTCCTGGCTCTGTACCAATTAATGCAGAATATGAAGGAAAATCCCCTGATGGAAAAGAAAGGGCCTCAAAAAAATCCAAGGGCATGTCTGGAAATACTGCTTCAGGTGGTGGTAGGACCGGGGAGAGTGGAAAGGTGGCTTCAAGTTCTGGAAATGATGGTGCTTCTCAAAGTGCTGAAAGTGGTACCGAGGGCTCATCAGAAGGCAGTGATGAAAATGCTAACCAACAGGAATTTGCTGCAAATAAGAAAGGAAGCTTCAACCAGATGCTGGCAGATGGAGCCAATGCACAAAACAACACGGGCGGACCAAATGGCAAATCTTCAGTGACTGGGAAACCCATCACCTCCATTTCTGGGACTAATCTGAACATGGGAATGGATTTGTGGAATACCACCACTGCAGCTCCAGGGGCTGGAAAAGTGAGAGGGAATGCCGTCTCCTCAGCTATTGTTACAGTACCGATGGTTGGTCGTGATGGTGTGATGCCTGAACAATGGGTTCAAGACGAACGCGAGCTAAAAAGACAGAAAAGGAAGCAATCTAACCGAGAGTCTGCCAGGAGGTCGAGATTACGTAAGCAGGCGGAGTGTGAAGAGCTGCAGGCAAGAGTGCAGACATTGAACAACGAGAACCGTACTCTTAGGGATGAGTTACAAAGGCTCTCCGAGGAATGCGAAAAGCTAACATCAGAAAATACTTCCATCAAGGAAGAATTGACACGATTTTGCGGGCCAGAGGCATTAGCTAACTTCGAAAAAGGAACCACCGCGCCGCCTGCTCAATCTCGAGGCAGCGGCGAGGGCAAGGGTTAA 1104 49.37 MGTGEEGTPSKTSKPPSSSQEIAPTPSYPDWSSSMQAYYGAGATPPPFFASTVASPTPHPYLWGGQHPLMPPYGTPVPYPAIYPPGGVYAHPNITVTPGSVPINAEYEGKSPDGKERASKKSKGMSGNTASGGGRTGESGKVASSSGNDGASQSAESGTEGSSEGSDENANQQEFAANKKGSFNQMLADGANAQNNTGGPNGKSSVTGKPITSISGTNLNMGMDLWNTTTAAPGAGKVRGNAVSSAIVTVPMVGRDGVMPEQWVQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVQTLNNENRTLRDELQRLSEECEKLTSENTSIKEELTRFCGPEALANFEKGTTAPPAQSRGSGEGKG 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32135231 32138214 + CcPI632755_04g016970.1 Cco04g1697 176922

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1697 367 Coils Coil 280 335 - -
Cco04g1697 367 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 274 289 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1697 367 Gene3D - 270 326 - -
Cco04g1697 367 FunFam BZIP transcription factor 269 320 - -
Cco04g1697 367 MobiDBLite consensus disorder prediction 264 290 - -
Cco04g1697 367 SUPERFAMILY Leucine zipper domain 270 326 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1697 367 MobiDBLite consensus disorder prediction 105 171 - -
Cco04g1697 367 Pfam G-box binding protein MFMR 1 94 IPR012900 -
Cco04g1697 367 CDD bZIP_plant_GBF1 272 322 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1697 367 MobiDBLite consensus disorder prediction 1 29 - -
Cco04g1697 367 MobiDBLite consensus disorder prediction 345 367 - -
Cco04g1697 367 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 269 332 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1697 367 SMART brlzneu 267 331 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1697 367 MobiDBLite consensus disorder prediction 189 219 - -
Cco04g1697 367 Pfam bZIP transcription factor 267 329 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1697 367 PANTHER G-BOX-BINDING FACTOR 3-RELATED 16 355 IPR044827 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0043565(InterPro)|GO:0043565(PANTHER)
Cco04g1697 367 MobiDBLite consensus disorder prediction 123 171 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1697 K09060 - - csv:101217128 682.174
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1697 Cco-Chr4:32135231 Cco09g1167 Cco-Chr9:11316447 5.10E-30 dispersed
Cco04g1697 Cco-Chr4:32135231 Cco10g0134 Cco-Chr10:1220216 2.70E-31 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g930 . . Bda04g00063 Bda10g00121 . . . . . . . . Car03g00698 Car07g00439 Sed14g1098 Cpe19g00799 Cpe10g00596 Bhi03g01272 Tan03g1960 Cmetu08g0851 . Hepe04g1491 . . Cla01g01889 Cam01g1979 Cec04g1631 Cco04g1697 Clacu01g1999 Cmu01g1870 Cre04g1551 . . Cone6ag1607 Cone9ag1533 Lsi01g00696 . . Cme08g00828 Blo05g00785 Blo06g00126 . . Bpe10g00107 Bpe06g00053 . . . Cmo03g00796 . . . . . . . . . . . . . . . . . . . . . . Csa06g03222 Chy02g00666 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007671 2 3 2 0 2 0 2 1 1 1 1 0 0 1 1 1 1 2 2 0 1 1 1 1 1 1 1 3 1 2 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59107 PF07777 MFMR 3.70E-33 No_clan Cco TF