Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1699 ATGCCAGCTGATGTAAAAGATTCGTCCATAGCTTCAGGGGAGGCCAGCGTTTCTTTTCCTGGAGCGAAATCTGCCACCAAGAAGAAAAGAAATCTGCCCGGGATGCCAGATCCGGAAGCCGAAGTAATTGCTCTGTCTCCGAAGTCCCTTTTGGCCACAAATCGATTTGTTTGCGAGATTTGCAATAAGGGGTTTCAGAGGGATCAGAATCTGCAGCTTCACCGGCGAGGTCATAATCTTCCGTGGAAGCTCCGGCAGCGGACAAGTAAGGAGGTGAAGAAGAAGGTCTATGTTTGCCCTGAGCCTTCTTGTGTTCATCATGATCCCTCCAGGGCTTTGGGTGATCTGACTGGGATTAAGAAGCACTTTTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGCGACAAGTGTTCGAAGAAATACGCTGTTCAGTCTGATTGGAAAGCCCATTCCAAAATCTGTGGCACCAGAGAGTATAAATGCGATTGTGGAACTTTGTTTTCCAGGAGGGATAGCTTCATTACACATAGAGCTTTCTGTGATGCATTGGCAGAGGAAAGTGCAAAATCTCAGCCTAAGCCAGTGGATTCTCAGCCTAAACCGGATTTAGACGCCAACCCTGATGGCGATTCTCAGTCGGCGGCGGTAAAACCGAATCCAGAGCCTTCTCCACCGCCTCTGCCATCATCACCACCGGCTCCATCTCCTCCACAGTCAACTGGTGAGGTAACAACTGTGTTGCCTATTCCTAGTCAAGAGCTGTCAGAGAATCCCTCGCAATGTATCGAAGAGGCGCTGGGTACACCCGGTTTGAGTGGGAGCAGCAGTAGCAGCAAGAGCGCAAGCAGCAATAGCAGTGCGAGAACGAGCGGATTTGCTGGTTTGTTTACTTCCTCGAGTATGCCGACAGGCATTCAACCTCCAAGACCTCCTGCATTTACAGACCTAATGCAAGGCATGGCTTGTACAGATCGCTCATCAGACTATGCACCATCTTCGACCATTGAACCTGTTTCTCTATGTCTTGCAATGAATCAAGGGTCATCGATCTTTGGAACTGCCAGCCAAGACCTCCGACAGTACACACCGACGCCACCGCCTGCAATGTCTGCCACGGCATTACTTCAAAAAGCAGCTCAAATGGGTGCCGCAGCATCAAATGCCTCGTTGCTTCGTGGTTTGGGTTTAGTATCATCTTCCCCTTTAGCTGCTCAGCAAGAAAGCTTGCCATGGAACCACCACCACCAGAGGCAAGTCGAACCTGATGGCCTCTCGATTGCTGCAGGGCTCGGACTTGGACTTCCCTGTGATGGAAACTCCGGATTGAAGGAATTAATGAGGGGAAACCATTCCATGTTTGCTCCAAAACATACCACACTCGATTTCCTTGGACTGGGAATGGCAGCTGGTGGCAGCCCCAACAGTGGCCTGGCTGCACTAATTACATCAGTCGGGAGCGGTGTAGACATCGGCATAACAACCCGATCATACGGTGGTGGTGACATATCCGGTGATGACATGAACAGAAGCAACTGA 1536 50.33 MPADVKDSSIASGEASVSFPGAKSATKKKRNLPGMPDPEAEVIALSPKSLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVKKKVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESAKSQPKPVDSQPKPDLDANPDGDSQSAAVKPNPEPSPPPLPSSPPAPSPPQSTGEVTTVLPIPSQELSENPSQCIEEALGTPGLSGSSSSSKSASSNSSARTSGFAGLFTSSSMPTGIQPPRPPAFTDLMQGMACTDRSSDYAPSSTIEPVSLCLAMNQGSSIFGTASQDLRQYTPTPPPAMSATALLQKAAQMGAAASNASLLRGLGLVSSSPLAAQQESLPWNHHHQRQVEPDGLSIAAGLGLGLPCDGNSGLKELMRGNHSMFAPKHTTLDFLGLGMAAGGSPNSGLAALITSVGSGVDIGITTRSYGGGDISGDDMNRSN 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32146844 32148969 - CcPI632755_04g016990.1 Cco04g1699 176924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1699 511 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 468 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cco04g1699 511 MobiDBLite consensus disorder prediction 269 303 - -
Cco04g1699 511 MobiDBLite consensus disorder prediction 185 244 - -
Cco04g1699 511 MobiDBLite consensus disorder prediction 218 238 - -
Cco04g1699 511 FunFam protein indeterminate-domain 5, chloroplastic-like 110 189 - -
Cco04g1699 511 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 93 127 - -
Cco04g1699 511 MobiDBLite consensus disorder prediction 1 39 - -
Cco04g1699 511 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 131 155 - -
Cco04g1699 511 Pfam Zinc finger, C2H2 type 56 78 IPR013087 -
Cco04g1699 511 FunFam protein indeterminate-domain 12-like 35 103 - -
Cco04g1699 511 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 158 196 - -
Cco04g1699 511 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 78 IPR013087 -
Cco04g1699 511 MobiDBLite consensus disorder prediction 264 307 - -
Cco04g1699 511 SMART c2h2final6 132 152 IPR013087 -
Cco04g1699 511 SMART c2h2final6 97 127 IPR013087 -
Cco04g1699 511 SMART c2h2final6 56 78 IPR013087 -
Cco04g1699 511 SUPERFAMILY beta-beta-alpha zinc fingers 55 152 IPR036236 -
Cco04g1699 511 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Cco04g1699 511 Gene3D Classic Zinc Finger 36 103 - -
Cco04g1699 511 Gene3D Classic Zinc Finger 110 190 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1699 Cco-Chr4:32146844 Cco09g0065 Cco-Chr9:563250 9.70E-88 dispersed
Cco01g0715 Cco-Chr1:7584910 Cco04g1699 Cco-Chr4:32146844 7.60E-61 transposed
Cco01g1868 Cco-Chr1:31219516 Cco04g1699 Cco-Chr4:32146844 2.90E-59 transposed
Cco03g0236 Cco-Chr3:2521068 Cco04g1699 Cco-Chr4:32146844 2.30E-87 transposed
Cco07g0970 Cco-Chr7:22498656 Cco04g1699 Cco-Chr4:32146844 6.20E-120 transposed
Cco09g0708 Cco-Chr9:6393795 Cco04g1699 Cco-Chr4:32146844 3.30E-88 transposed
Cco04g1699 Cco-Chr4:32146844 Cco08g1706 Cco-Chr8:28416846 1.20E-90 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59108 PF00096 zf-C2H2 0.0052 CL0361 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1699 K25869 - csv:101217597 693.73