Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1706 ATGGCGAATATGTGTGCCGATAGTGGCAATCTTATGGCGATTGCCCAGCAAGTCATGAAGCAGCAGCAACAACAGGAGGAGCAGCAGCAACAGCACCCACAGCAGCTCACTGGACCCTGTACTTTCGGTCTCAACCCATGGAATGCCTCGAACCATGCTCTGTCCGGTGCTCCAGATTTGGGGTTTGGGCTTTCCGGAGCTGGATTTTCCAACCCGTTTCAGGTTCAGAGAGTGGTCGACGTTGGAGAAACGAGCTTTCAGTTTCCGAACTTGGAGAACCATTCCCCTGCTTTCAGATTTTCCGATTTCGACGGCGGTACTGCTGCAGAGTTCGACTCTGATGAGTGGATGGAGAGTCTAATGGTTGGTGGAGATTCAACAGATAGCACTAATCTTCCTTCTGGTTGCGACGTGTGGCAGTCTAATCCGGATTTTGCTTTCTACGGTGCTGATCCCTTTGTCCCCTGTCCTAGTCGCTTCACTATTCCCTGTTCTTCACCCTCTGATCATAACAGAATCATTTTCCCTGACCCGCCCAAAAGTGAACCTGCCGTTGAACCGCCGGTGGTCTCGTGGACGGGGATTCCCCCGGCGACTCCTTCGGTGGTGGTTAAGGACACTCAAGTCCCCAACCCTCCCCTTGCTATTCTCAAAAGTGAAGATAACGGCGGTTCATCGAGTTCTACAGGGACTGAATCGACTCCGCTGCTACTTAAAAGCCTAATTGAATGTGCTCGACTTTCTGAATCCGAGCCAGATCGAGCGGCGCAAACGTTGATTAAGCTTAAGGAGTCGTTATCAGAGCACGGAGATCCGATGGAGAGGGTCGCCTTTTACTTTCTTGAAGCCCTTTGCTGGAGATTATCACTCCCATCGTATAATCGTTTGGTTTCTTGCGAATCCACTTCCGACGATTTCACTCTCTCTTACAAAGCTCTCAACGACGCTTGCCCTTACTCCAAATTCGCTCATTTGACTGCAAACCAAGCTATCCTCGAGAGTACAGATGACGCAAGCAAGATTCACATAATCGACTTCGGGATTACTCAGGGAGTTCAATGGGCGGCGCTTCTACAAGCTCTTGCAACCCGCTCCACCGGAAAACCAACCAGAATTCGGATCTCCGGCATCCCATCTCCGATGCTCGGGAACTGTCCAGCGACGGGTAACCGACTGGCCGAGTTCGCTAAACTTCTGGAACTAAACTTCGAATTCGATCCAATTCTCACTCCAATTGAAGAACTGAACGTATCATCCTTCCGAATCGACACTGACGAAACCCTCGCCGTGAATTTCATGCTTCAATTGTACAATCTCCTCGACGAACCTCCTCGCGCCGTTCTCAAAGTTCTGCAACTAGCCAAATCACTGAACCCTAAAATCGTAACCCTCGGCGAATACGAAGCGAGTCTAAACCGGGTCGGATTCTTCAACCGGTTCAAGAACGGCCTTAGATACTACTCAGCCGTGTTCGAATCGCTGGACCCAAAACTACCTCGCGACTCAAAGGAGAGACTACAACTGGAAAAGCTGGTACTCGGCCGGCAAATCGGCGGCCTAGTCGGACCGGAATCATCGCCGGGAGCGAAAACCGATCGAATGGAAGACAAAGAAGAGTGGAAAATGTTATTGGAAAATTGCGGATTCGAGTCATTTCTTCATGGCGTTGATAGCAACGGCTTCAAAGTCTCAGAAGCAAATATGATCAACGCAATCAGATTCGGCCGTACTCCACCGCCGATTTTGCTCACATCACCTCTTCCGCCGCAGCTCCGCCGTATTTGCTCGCCTGAGCTCCGATCGCGTCGAGCGATTGGTTTTGCCACTGCACCTGAACAGAACGAAAAGGACATGGATGACTCTCAGAAGAAACCCAAGGAGACTGGAGATATAATGTCTGATTCCTTCGGCGAAGGGTACTCAACTCGAAGCGATGAAGAAGGATTTGGAGGAACTTATGGAGGGAATCAGTCAATCGATGACGAATCTGAGAATAAAAAATCGTTTCTCCACGGGAATCAACATGCCGTTGATCTCTACCGGCCTCGCACAATCCTCGCGGGTTTTTGCTCTATCGTCGCGGAATATCGGACGCCTATGAGAAACTCCGGTGGCCGTGGCTGTTCACTTGTTTTTTCCGGTTACTGGTGTTCTTCTTTTCCGCCGAGATCCAAATTCAGGGTTCTCACCGGATGA 2196 50.32 MANMCADSGNLMAIAQQVMKQQQQQEEQQQQHPQQLTGPCTFGLNPWNASNHALSGAPDLGFGLSGAGFSNPFQVQRVVDVGETSFQFPNLENHSPAFRFSDFDGGTAAEFDSDEWMESLMVGGDSTDSTNLPSGCDVWQSNPDFAFYGADPFVPCPSRFTIPCSSPSDHNRIIFPDPPKSEPAVEPPVVSWTGIPPATPSVVVKDTQVPNPPLAILKSEDNGGSSSSTGTESTPLLLKSLIECARLSESEPDRAAQTLIKLKESLSEHGDPMERVAFYFLEALCWRLSLPSYNRLVSCESTSDDFTLSYKALNDACPYSKFAHLTANQAILESTDDASKIHIIDFGITQGVQWAALLQALATRSTGKPTRIRISGIPSPMLGNCPATGNRLAEFAKLLELNFEFDPILTPIEELNVSSFRIDTDETLAVNFMLQLYNLLDEPPRAVLKVLQLAKSLNPKIVTLGEYEASLNRVGFFNRFKNGLRYYSAVFESLDPKLPRDSKERLQLEKLVLGRQIGGLVGPESSPGAKTDRMEDKEEWKMLLENCGFESFLHGVDSNGFKVSEANMINAIRFGRTPPPILLTSPLPPQLRRICSPELRSRRAIGFATAPEQNEKDMDDSQKKPKETGDIMSDSFGEGYSTRSDEEGFGGTYGGNQSIDDESENKKSFLHGNQHAVDLYRPRTILAGFCSIVAEYRTPMRNSGGRGCSLVFSGYWCSSFPPRSKFRVLTG 731
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32218525 32226812 + CcPI632755_04g017060.1 Cco04g1706 176931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1706 731 Pfam GRAS domain family 238 552 IPR005202 -
Cco04g1706 731 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 232 551 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cco04g1706 731 MobiDBLite consensus disorder prediction 613 631 - -
Cco04g1706 731 MobiDBLite consensus disorder prediction 606 663 - -
Cco04g1706 731 Coils Coil 11 31 - -
Cco04g1706 731 ProSiteProfiles GRAS family profile. 228 612 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1706 Cco-Chr4:32218525 Cco07g0988 Cco-Chr7:22781696 4.80E-157 dispersed
Cco04g1706 Cco-Chr4:32218525 Cco10g2105 Cco-Chr10:34362288 1.10E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59109 PF03514 GRAS 1.80E-92 CL0063 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1706 - - - 0.0