Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1710 ATGGGGAAAACAGTGGTGGGAAAAAACACAGGAGCAAGGGAGAGATTGGGACAAGCTGAGGCTGAGTGTAATTGCAAGGGATACCTTCGGGATCTGAGAAATGAGCGTCGTGCGCCGGGGCGGGTGCAGTGGCTGGTGGTTATGGTTGGGAAGTGGTGGCTGAAGTTGAAGTATTCCATTTACCGATCAAGGAAGAGAGATGGAGCTATGTGGAATCGAAGCCTCACCAGCAATGCAACGCGCGGTGTGTTGAAGGAGAAGAAATGGGACGCGCTCATCGTCGGCGCAGGCCACAACGGTTTGATAGCCGCTGCTTATCTTGCCCGTGGCGGCCTCTCTGTTGCCGTGCTTGAGAGGCGCCATGTGATCGGCGGTGCTGCTGTTACCGAAGAGCTAATTCCAGGGTTTAAGTTCTCTCGCTGTAGTTACCTCTTAAGCCTCCTCCGGCCATCCATCATCAGGGACTTGGAATTGAGGAGACATGGATTGAAGCTATTGAAACCGATGGCCACATCTTTTACACCCTGCCTCAATGGTCGTTATCTTCTGCTCGGAATGAACGAAGAACATGATTACTTGGAGATATCTAAGTTTTCTAAGAGGGATGCAGATGCGTACCCAAGATATGAAAGACAGCTTCATAAGTATTGTAAATTCATGGATTTTATCTTGGATTCACGAACTCCTGAAGCATTACACTGGGGTTCATCATCTAATTACCGGTTGAGAGATAAGGTGCAAAACTCTATTTTTTGGGCTCGTTGTCTCCGGCATGCGCTATCATTAGGTCAAAAAGATCTGGTGGAGTTGATGGACCTTCTAGTCTCACCAACTTCTAAGGTTTTAAATGAGTGGTTTGAGTCAGATGTATTGAAGGCAACACTTGCAGGAGATGCTATCATTGGGACTATGGCAAGCATCCATACTTCTGGAAGTGGATATGTTCTACTACACCATGTAATGGGAGAAACTATTCATGGTGATCGTAATATTTGGTCACATGTCGAAGGTGGGATGGGTTCTGTATCCATGGCCATAAGCAATGCTGCCAAAGAAGCTGGAGTTCATATTGCAACAAATGCAGAGGTTTCAGAACTGATGATTGAAGGCTCTGGTAGATTAAAGGGGGTGTTACTGTCGGATGGGACACAAGTGCATTCTTCAGTTGTTCTATCAAATGCAACCCCTTACAAAACATTCGTGGAAATGGTGCCTCAAACTTTTCTTCCGGATGATTTTCTACGGGCTATCGAATGTTCTGACTATACCTCAGGAACAACAAAAATAAACGTTGCTGTTGACAAATTGCCACAGTTCCAGTCTTGCAATTTGAATAGTCAAGAGGGGGTGGGTCCTCAACATACAACTACTATTCATATTGGTGCTGAAAGAATGGAAGATATTGGCATAGCTTGCCAAGATGCCTGGAATGGCTTTCCATCAAAAAGACCTGTTATCGAGATGACAATTCCTTCTGCTCTGGACAAAACTGTATCTCCACCTGGTAAGCACGTAGTCAGCTTATTTACACAGTATACACCTTACAAACCCTTGGATGGGAGCTGGGAAGATGTTACATACAGGGATTTATATGCCAAAATATGCTTTAATCTGATTGATGAATATGCACCTGGTTTCAGCTCATCAATCATCGGTTATGACATGCTGACACCACCTGACCTTGAGAGGGAAATTGGTCTGACAGGAGGAAATATTTTTCATGGGGCTATGGGTTTAGATTCTCTTTTCTTGATGCGGCCTGTTAAAGGATGGTCAAATCACAGGACACCAATTAAAGGATTGTACCTCTGTGGTAGCGGGTCGCATCCTGGAGGAGGTGTCATGGGGGTACCAGGTCACAATGCTGCATGTCTTGTTCTTGAGGATCTGCAAATGGGAGTAATGTCGCAAAAGAATAGCAAGCCAGGAGACATCAAAGATTCCATCCTAAAATTGAATCCCCGAATCTCCTCGGCATGGTTTATCTCTGAGCTCTGCCCATCGCGCTCCTTCCGAAGTTCGAGCTGGTTGCCTCCTTCTAATGGTTTCCTCAAGCTGAGTATTGACACGACTTGGAAAACGGACCCTCCTTCAATTGGTTTTAGTGCAATTCTTCGAGATTCTTCGGGAAATTTAAGGGCATTGGCTCTTAATTACTCTGATTGCGCTTCTGACCCCTCCCTTGGCTGA 2190 45.66 MGKTVVGKNTGARERLGQAEAECNCKGYLRDLRNERRAPGRVQWLVVMVGKWWLKLKYSIYRSRKRDGAMWNRSLTSNATRGVLKEKKWDALIVGAGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLLSLLRPSIIRDLELRRHGLKLLKPMATSFTPCLNGRYLLLGMNEEHDYLEISKFSKRDADAYPRYERQLHKYCKFMDFILDSRTPEALHWGSSSNYRLRDKVQNSIFWARCLRHALSLGQKDLVELMDLLVSPTSKVLNEWFESDVLKATLAGDAIIGTMASIHTSGSGYVLLHHVMGETIHGDRNIWSHVEGGMGSVSMAISNAAKEAGVHIATNAEVSELMIEGSGRLKGVLLSDGTQVHSSVVLSNATPYKTFVEMVPQTFLPDDFLRAIECSDYTSGTTKINVAVDKLPQFQSCNLNSQEGVGPQHTTTIHIGAERMEDIGIACQDAWNGFPSKRPVIEMTIPSALDKTVSPPGKHVVSLFTQYTPYKPLDGSWEDVTYRDLYAKICFNLIDEYAPGFSSSIIGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNHRTPIKGLYLCGSGSHPGGGVMGVPGHNAACLVLEDLQMGVMSQKNSKPGDIKDSILKLNPRISSAWFISELCPSRSFRSSSWLPPSNGFLKLSIDTTWKTDPPSIGFSAILRDSSGNLRALALNYSDCASDPSLG 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32246560 32255579 - CcPI632755_04g017100.1 Cco04g1710 176935

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1710 729 Gene3D - 88 187 IPR036188 -
Cco04g1710 729 Gene3D - 295 439 IPR036188 -
Cco04g1710 729 SUPERFAMILY FAD/NAD(P)-binding domain 87 510 IPR036188 -
Cco04g1710 729 Pfam NAD(P)-binding Rossmann-like domain 93 142 - -
Cco04g1710 729 PANTHER PHYTOENE DEHYDROGENASE 76 631 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1710 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0896 Cco-Chr7:20866554 Cco04g1710 Cco-Chr4:32246560 7.30E-21 transposed
Cco07g0897 Cco-Chr7:20879887 Cco04g1710 Cco-Chr4:32246560 1.10E-95 transposed
Cco10g1787 Cco-Chr10:31475593 Cco04g1710 Cco-Chr4:32246560 2.40E-14 transposed
Cco04g1710 Cco-Chr4:32246560 Cco07g0893 Cco-Chr7:20837420 1.90E-89 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g971 . Blo16g00044 Bda04g00049 . . Bpe13g00445 . . . . . . . . . . Cpe10g00612 . . . . . . . Cla01g01906 Cam01g1995 Cec04g1647 Cco04g1710 Clacu01g2015 Cmu01g1887 Cre04g1564 . . Cone6ag1621 Cone9ag1546 . . Chy07g01231 Cme08g00846 Blo05g00796 . . . . Bpe06g00045 . Bma06g00121 . Cmo03g00778 . . . . . . . . . . . . . . Cla07g00797 Cam07g0861 Cec07g0912 Cco07g0897 Clacu07g0835 Cmu07g0839 Cre07g1196 Lsi07g00265 Csa06g03238 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001846 2 2 2 3 2 3 2 4 3 2 2 2 2 2 2 2 3 2 2 3 2 1 3 2 2 2 1 2 4 2 68