Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1711 ATGGAGGCTAAGTTTTTCCGGTTCCTGAAGATTGTGGGAGTTGGTTACAAAGCCAGAGCAGAAGCAGCAGGACGTCTCTTGTATCTTAAATTGGGATACAGCCATGAAGTTGAACTAACCGTTCCACCAGCTGTTCGTGTCTTTTGCTTCAAAAACAATGTGGTATGCTGCACAGGGATTGACAAACAAAGGGTACACCAATTTGCTGCTGCAGTTCGGAGCTGTAAGCCACCAGAAGTATACAAAGGCAAGGGTATCATGTATATCGACGAGGTCATAAAGAAGAAACAAGGAAAGAAGTCTAAATAA 309 43.37 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK 102
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32256935 32257243 + CcPI632755_04g017110.1 Cco04g1711 176936

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1711 102 PRINTS Ribosomal protein L6 signature 65 86 IPR019906 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)|GO:0019843(InterPro)
Cco04g1711 102 PRINTS Ribosomal protein L6 signature 23 39 IPR019906 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)|GO:0019843(InterPro)
Cco04g1711 102 SUPERFAMILY Ribosomal protein L6 5 100 IPR036789 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)|GO:0019843(InterPro)
Cco04g1711 102 FunFam 60S ribosomal protein L6 5 102 - -
Cco04g1711 102 Pfam Ribosomal protein L6 12 88 IPR020040 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)|GO:0019843(InterPro)
Cco04g1711 102 ProSitePatterns Ribosomal protein L6 signature 1. 78 86 IPR002358 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cco04g1711 102 Gene3D - 5 102 IPR036789 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)|GO:0019843(InterPro)
Cco04g1711 102 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 3 100 IPR000702 GO:0003735(InterPro)|GO:0003735(PANTHER)|GO:0005840(InterPro)|GO:0006412(InterPro)|GO:0019843(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1711 K02933 - - csv:101220210 208.379
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0190 Cco-Chr2:1823388 Cco04g1711 Cco-Chr4:32256935 5.70E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g973 . . . . . . . . . . Cma03g00749 . Car03g00684 . . . Cpe10g00613 Bhi03g01297 . . . Hepe04g1513 . . Cla01g01907 . . Cco04g1711 . Cmu01g1888 . . . . . Lsi01g00675 . . Cme08g00847 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g03239 Chy02g00650 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008885 2 4 2 2 2 0 1 1 0 1 1 0 1 1 2 0 1 0 1 0 1 1 2 0 1 1 1 1 1 1 32