Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1718 ATGGAGACGAGAGGTGAAGATGAGGAAATAGGAACTCCTAATTCGCCTTTGTGCTATAATAATCCATCATCAAATAGGGAATCTTCAACCAAACTGCCTAATTCTGATAATCCATTTCTAACAACAGCTGCTGATAGAAGAAGAGATCACACAGTACCCCAACTCCATTTCTCTCATCACCACAAACTGAATCTCCATCATATACACAAACAACACACAAGAGACCATCCTGAAGCAACCCCCGATCCTCCAATCCAGCCCTCCACATCTGCCTCACCACCATCTGCTGTCACTCCGCCGCTGCCAATTGCCAGCAGTAGACTGATCTCAAGAACACCACCATTTCCAGGTGCAACGGACAACAGTATTCCTTCATCGGTAATTCGATACCGAGAATGTCTGAAGAACCACGCAGCAAGTACCGGAGGCCATGTTCTCGATGGCTGCGGCGAGTTCATGCCTAATGGAGAAGATGGAACGCCTGAGGCCTTGAAGTGTGCCGCCTGTGAATGCCATCGAAACTTTCACCGGAAAGAGATGAAAGATGATCCACCCTCGCAGCAAGCTTTACCCAGTGGTTTCTTCATCTCCAATTCCATCAGAAACAATGGCCACCGCACTGATAGGACACCAGTTGTTCCAGTGTCCCGTCACCATCAATTGCCGGCGGTTCCAATTTCTTCAATGATGATGGCATTTGGTGGAGGAAGCAATGGAGCTCCGGATGAGTCTTCGAGTGAGGACCTGAACATGTATCACCCGTCAAATAATGGAGCCCGGGACCTGTTCGGTCAGCAGACACAACTAACAAAGAAACGATTTAGGACAAAGTTCACTCAGGGACAGAAGGACAAGATGGTAGAATTTGCTGAAAAGTTGGGGTGGAAGATTCAGAAACATGATGAACTGGAAGTGCAGCAGTTCTGCGCTGAGGTGGGAGTAAGGAGGCAGGTTTTCAAGGTTTGGATGCACAACAACAAACAAGCCATGAAGAAGAAACAGATGTAA 1008 47.52 METRGEDEEIGTPNSPLCYNNPSSNRESSTKLPNSDNPFLTTAADRRRDHTVPQLHFSHHHKLNLHHIHKQHTRDHPEATPDPPIQPSTSASPPSAVTPPLPIASSRLISRTPPFPGATDNSIPSSVIRYRECLKNHAASTGGHVLDGCGEFMPNGEDGTPEALKCAACECHRNFHRKEMKDDPPSQQALPSGFFISNSIRNNGHRTDRTPVVPVSRHHQLPAVPISSMMMAFGGGSNGAPDESSSEDLNMYHPSNNGARDLFGQQTQLTKKRFRTKFTQGQKDKMVEFAEKLGWKIQKHDELEVQQFCAEVGVRRQVFKVWMHNNKQAMKKKQM 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32300706 32301713 + CcPI632755_04g017180.1 Cco04g1718 176943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1718 335 MobiDBLite consensus disorder prediction 65 102 - -
Cco04g1718 335 FunFam Zinc-finger homeodomain protein 2 261 332 - -
Cco04g1718 335 Pfam ZF-HD protein dimerisation region 128 180 IPR006456 -
Cco04g1718 335 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 129 180 IPR006456 -
Cco04g1718 335 MobiDBLite consensus disorder prediction 14 41 - -
Cco04g1718 335 SUPERFAMILY Homeodomain-like 267 332 IPR009057 -
Cco04g1718 335 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 130 179 IPR006456 -
Cco04g1718 335 Gene3D - 260 332 - -
Cco04g1718 335 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 92 329 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cco04g1718 335 MobiDBLite consensus disorder prediction 80 100 - -
Cco04g1718 335 MobiDBLite consensus disorder prediction 1 41 - -
Cco04g1718 335 NCBIfam homeobox domain, ZF-HD class 271 328 IPR006455 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1718 Cco-Chr4:32300706 Cco08g1302 Cco-Chr8:24790446 1.40E-42 dispersed
Cco07g0916 Cco-Chr7:21139965 Cco04g1718 Cco-Chr4:32300706 5.70E-48 transposed
Cco04g1718 Cco-Chr4:32300706 Cco08g1684 Cco-Chr8:28265445 7.80E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59111 PF04770 ZF-HD_dimer 9.90E-31 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1718 - - - 0.0