Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1718 ATGGAGACGAGAGGTGAAGATGAGGAAATAGGAACTCCTAATTCGCCTTTGTGCTATAATAATCCATCATCAAATAGGGAATCTTCAACCAAACTGCCTAATTCTGATAATCCATTTCTAACAACAGCTGCTGATAGAAGAAGAGATCACACAGTACCCCAACTCCATTTCTCTCATCACCACAAACTGAATCTCCATCATATACACAAACAACACACAAGAGACCATCCTGAAGCAACCCCCGATCCTCCAATCCAGCCCTCCACATCTGCCTCACCACCATCTGCTGTCACTCCGCCGCTGCCAATTGCCAGCAGTAGACTGATCTCAAGAACACCACCATTTCCAGGTGCAACGGACAACAGTATTCCTTCATCGGTAATTCGATACCGAGAATGTCTGAAGAACCACGCAGCAAGTACCGGAGGCCATGTTCTCGATGGCTGCGGCGAGTTCATGCCTAATGGAGAAGATGGAACGCCTGAGGCCTTGAAGTGTGCCGCCTGTGAATGCCATCGAAACTTTCACCGGAAAGAGATGAAAGATGATCCACCCTCGCAGCAAGCTTTACCCAGTGGTTTCTTCATCTCCAATTCCATCAGAAACAATGGCCACCGCACTGATAGGACACCAGTTGTTCCAGTGTCCCGTCACCATCAATTGCCGGCGGTTCCAATTTCTTCAATGATGATGGCATTTGGTGGAGGAAGCAATGGAGCTCCGGATGAGTCTTCGAGTGAGGACCTGAACATGTATCACCCGTCAAATAATGGAGCCCGGGACCTGTTCGGTCAGCAGACACAACTAACAAAGAAACGATTTAGGACAAAGTTCACTCAGGGACAGAAGGACAAGATGGTAGAATTTGCTGAAAAGTTGGGGTGGAAGATTCAGAAACATGATGAACTGGAAGTGCAGCAGTTCTGCGCTGAGGTGGGAGTAAGGAGGCAGGTTTTCAAGGTTTGGATGCACAACAACAAACAAGCCATGAAGAAGAAACAGATGTAA 1008 47.52 METRGEDEEIGTPNSPLCYNNPSSNRESSTKLPNSDNPFLTTAADRRRDHTVPQLHFSHHHKLNLHHIHKQHTRDHPEATPDPPIQPSTSASPPSAVTPPLPIASSRLISRTPPFPGATDNSIPSSVIRYRECLKNHAASTGGHVLDGCGEFMPNGEDGTPEALKCAACECHRNFHRKEMKDDPPSQQALPSGFFISNSIRNNGHRTDRTPVVPVSRHHQLPAVPISSMMMAFGGGSNGAPDESSSEDLNMYHPSNNGARDLFGQQTQLTKKRFRTKFTQGQKDKMVEFAEKLGWKIQKHDELEVQQFCAEVGVRRQVFKVWMHNNKQAMKKKQM 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32300706 32301713 + CcPI632755_04g017180.1 Cco04g1718 176943

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1718 335 MobiDBLite consensus disorder prediction 65 102 - -
Cco04g1718 335 FunFam Zinc-finger homeodomain protein 2 261 332 - -
Cco04g1718 335 Pfam ZF-HD protein dimerisation region 128 180 IPR006456 -
Cco04g1718 335 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 129 180 IPR006456 -
Cco04g1718 335 MobiDBLite consensus disorder prediction 14 41 - -
Cco04g1718 335 SUPERFAMILY Homeodomain-like 267 332 IPR009057 -
Cco04g1718 335 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 130 179 IPR006456 -
Cco04g1718 335 Gene3D - 260 332 - -
Cco04g1718 335 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 92 329 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cco04g1718 335 MobiDBLite consensus disorder prediction 80 100 - -
Cco04g1718 335 MobiDBLite consensus disorder prediction 1 41 - -
Cco04g1718 335 NCBIfam homeobox domain, ZF-HD class 271 328 IPR006455 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1718 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1718 Cco-Chr4:32300706 Cco08g1302 Cco-Chr8:24790446 1.40E-42 dispersed
Cco07g0916 Cco-Chr7:21139965 Cco04g1718 Cco-Chr4:32300706 5.70E-48 transposed
Cco04g1718 Cco-Chr4:32300706 Cco08g1684 Cco-Chr8:28265445 7.80E-54 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g980 Blo04g00916 Blo16g00046 . . Bpe15g00427 Bpe13g00443 . . Cmo04g00894 . Cma03g00745 Cma07g00485 Car03g00680 Car07g00426 Sed14g1123 Cpe19g00812 Cpe10g00617 Bhi03g01303 Tan03g1984 Cmetu03g1675 . Hepe04g1519 . . Cla01g01913 Cam01g2000 Cec04g1655 Cco04g1718 Clacu01g2019 Cmu01g1894 Cre04g1570 . . Cone6ag1625 Cone9ag1550 Lsi01g00671 . Chy07g01244 Cme08g00852 . . Bda11g01865 . . . Bma03g00988 Bma06g00120 . Cmo03g00772 Cmo07g00483 . . . . . . . . . . . . . Cla07g00812 Cam07g0875 Cec07g0928 Cco07g0916 Clacu07g0850 Cmu07g0854 Cre07g1212 . Csa06g03243 Chy02g00645 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco08g1302 . 52 245 ZF-HD Transcription Factor Family AT5G65410 55.8 6.6e-46 181.4
Cco08g1302 . 22 241 ZF-HD Transcription Factor Family AT4G24660 51.1 2.1e-50 196.1
Cco10g0813 . 46 187 ZF-HD Transcription Factor Family AT4G24660 52.1 2.4e-41 166.0
Cco11g0011 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.8 1.2e-51 200.7
Cco11g0011 . 80 292 ZF-HD Transcription Factor Family AT1G14440 54.6 3.9e-55 212.2
Cco04g1718 . 129 335 ZF-HD Transcription Factor Family AT2G18350 52.9 3.2e-50 195.7
Cco10g1496 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 3.0e-51 199.1
Cco09g2028 . 6 254 ZF-HD Transcription Factor Family AT5G15210 51.8 8.0e-49 191.0
Cco10g1496 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.1e-60 230.7
Cco09g2028 . 16 256 ZF-HD Transcription Factor Family AT3G28920 58.8 3.2e-57 219.2
Cco09g2028 . 24 260 ZF-HD Transcription Factor Family AT5G39760 56.0 3.1e-50 196.1
Cco10g1496 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.2e-48 189.9
Cco09g2028 . 56 257 ZF-HD Transcription Factor Family AT1G69600 50.2 1.4e-47 186.8
Cco11g0011 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.8 1.2e-51 200.7
Cco08g1302 . 22 241 ZF-HD Transcription Factor Family AT4G24660 51.1 2.1e-50 196.1
Cco10g0813 . 46 187 ZF-HD Transcription Factor Family AT4G24660 52.1 2.4e-41 166.0
Cco09g2028 . 24 260 ZF-HD Transcription Factor Family AT5G39760 56.0 3.1e-50 196.1
Cco10g1496 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.2e-48 189.9
Cco04g1718 . 129 335 ZF-HD Transcription Factor Family AT2G18350 52.9 3.2e-50 195.7
Cco08g1302 . 52 245 ZF-HD Transcription Factor Family AT5G65410 55.8 6.6e-46 181.4
Cco09g2028 . 56 257 ZF-HD Transcription Factor Family AT1G69600 50.2 1.4e-47 186.8
Cco10g1496 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 3.0e-51 199.1
Cco09g2028 . 6 254 ZF-HD Transcription Factor Family AT5G15210 51.8 8.0e-49 191.0
Cco11g0011 . 80 292 ZF-HD Transcription Factor Family AT1G14440 54.6 3.9e-55 212.2
Cco10g1496 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.1e-60 230.7
Cco09g2028 . 16 256 ZF-HD Transcription Factor Family AT3G28920 58.8 3.2e-57 219.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005348 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59111 PF04770 ZF-HD_dimer 9.90E-31 No_clan Cco TF