Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g1718 | ATGGAGACGAGAGGTGAAGATGAGGAAATAGGAACTCCTAATTCGCCTTTGTGCTATAATAATCCATCATCAAATAGGGAATCTTCAACCAAACTGCCTAATTCTGATAATCCATTTCTAACAACAGCTGCTGATAGAAGAAGAGATCACACAGTACCCCAACTCCATTTCTCTCATCACCACAAACTGAATCTCCATCATATACACAAACAACACACAAGAGACCATCCTGAAGCAACCCCCGATCCTCCAATCCAGCCCTCCACATCTGCCTCACCACCATCTGCTGTCACTCCGCCGCTGCCAATTGCCAGCAGTAGACTGATCTCAAGAACACCACCATTTCCAGGTGCAACGGACAACAGTATTCCTTCATCGGTAATTCGATACCGAGAATGTCTGAAGAACCACGCAGCAAGTACCGGAGGCCATGTTCTCGATGGCTGCGGCGAGTTCATGCCTAATGGAGAAGATGGAACGCCTGAGGCCTTGAAGTGTGCCGCCTGTGAATGCCATCGAAACTTTCACCGGAAAGAGATGAAAGATGATCCACCCTCGCAGCAAGCTTTACCCAGTGGTTTCTTCATCTCCAATTCCATCAGAAACAATGGCCACCGCACTGATAGGACACCAGTTGTTCCAGTGTCCCGTCACCATCAATTGCCGGCGGTTCCAATTTCTTCAATGATGATGGCATTTGGTGGAGGAAGCAATGGAGCTCCGGATGAGTCTTCGAGTGAGGACCTGAACATGTATCACCCGTCAAATAATGGAGCCCGGGACCTGTTCGGTCAGCAGACACAACTAACAAAGAAACGATTTAGGACAAAGTTCACTCAGGGACAGAAGGACAAGATGGTAGAATTTGCTGAAAAGTTGGGGTGGAAGATTCAGAAACATGATGAACTGGAAGTGCAGCAGTTCTGCGCTGAGGTGGGAGTAAGGAGGCAGGTTTTCAAGGTTTGGATGCACAACAACAAACAAGCCATGAAGAAGAAACAGATGTAA | 1008 | 47.52 | METRGEDEEIGTPNSPLCYNNPSSNRESSTKLPNSDNPFLTTAADRRRDHTVPQLHFSHHHKLNLHHIHKQHTRDHPEATPDPPIQPSTSASPPSAVTPPLPIASSRLISRTPPFPGATDNSIPSSVIRYRECLKNHAASTGGHVLDGCGEFMPNGEDGTPEALKCAACECHRNFHRKEMKDDPPSQQALPSGFFISNSIRNNGHRTDRTPVVPVSRHHQLPAVPISSMMMAFGGGSNGAPDESSSEDLNMYHPSNNGARDLFGQQTQLTKKRFRTKFTQGQKDKMVEFAEKLGWKIQKHDELEVQQFCAEVGVRRQVFKVWMHNNKQAMKKKQM | 335 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 32300706 | 32301713 | + | CcPI632755_04g017180.1 | Cco04g1718 | 176943 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g1718 | 335 | MobiDBLite | consensus disorder prediction | 65 | 102 | - | - | |
Cco04g1718 | 335 | FunFam | Zinc-finger homeodomain protein 2 | 261 | 332 | - | - | |
Cco04g1718 | 335 | Pfam | ZF-HD protein dimerisation region | 128 | 180 | IPR006456 | - | |
Cco04g1718 | 335 | NCBIfam | ZF-HD homeobox protein Cys/His-rich dimerization domain | 129 | 180 | IPR006456 | - | |
Cco04g1718 | 335 | MobiDBLite | consensus disorder prediction | 14 | 41 | - | - | |
Cco04g1718 | 335 | SUPERFAMILY | Homeodomain-like | 267 | 332 | IPR009057 | - | |
Cco04g1718 | 335 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 130 | 179 | IPR006456 | - | |
Cco04g1718 | 335 | Gene3D | - | 260 | 332 | - | - | |
Cco04g1718 | 335 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 92 | 329 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER) | |
Cco04g1718 | 335 | MobiDBLite | consensus disorder prediction | 80 | 100 | - | - | |
Cco04g1718 | 335 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Cco04g1718 | 335 | NCBIfam | homeobox domain, ZF-HD class | 271 | 328 | IPR006455 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g1718 | Cco-Chr4:32300706 | Cco08g1302 | Cco-Chr8:24790446 | 1.40E-42 | dispersed | |
Cco07g0916 | Cco-Chr7:21139965 | Cco04g1718 | Cco-Chr4:32300706 | 5.70E-48 | transposed | |
Cco04g1718 | Cco-Chr4:32300706 | Cco08g1684 | Cco-Chr8:28265445 | 7.80E-54 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59111 | PF04770 | ZF-HD_dimer | 9.90E-31 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g1718 | - | - | - | 0.0 |