Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1720 ATGTCCTTCAAAAGCCTTTTTCGTGACCTAAGGGAAATAAAAGATGGAATTAGAATCAAACCGAAACGAGGGGGAGAAGGGAGGAACTGGCAAAGTCGTACAAGGTCACATATTGCACCTGATGAAGTGCCTCCCCAGCCTGAAGCAATTCAACAAGGGCAGTGGGCAAGCTTGCCTCCTGAGTTGCTTCTGGACATAATACGAAGAGTTGAAGAGAGTGAAACCTCATGGCCAGCTAGGACTGTTGTCCTTTTTTGTGCTTCAGTGTGCAAGTCATGGAGAAACATTACACAGGAAATTGTTAAAACTCCCGAGCAGTGTGGAAGGCTCACGTTTCCCATTTCACTGAAACAGCCGGGACCTCGAGACTCTCCAATTCAGTGCTATGTTAGAAGGCACAGAGCAACTTCAACCTATCTTCTATACTCCGGATTGGTGCCTTCGGAGAATGAAGGTGATAAGCTCTTATTAGCAGCCAAGAGAGTAAGAAGGGCTACAGGTACAGATTTTGTTATATCTCTGGTAGCTGATGATTTTTCTTGGGCCTGCAGTACCTATGTGGGTAAATTAAGGTCCAATTTTTTTGGCACAAGGTTCACCATGTATGATAGTCAACCACCAGTTCTCACTGCAGGACAACAGAACAATCAATCAAATCGTAGGTTTCATGCCAAGCAAGTCTCTCCAACAATGTCAGCTTGTAACTACACTGGAGGAAATGCACCGACACCGACCTCATTCTCATCCTGTCTTGATGGCCATCACCACCCCCCTTTACCGGCTTCTAAAGGAAAGGAGCCAGACATAGATTTCAGTTCCACAAGTATCACTGTGGCACCAGTTCAAGAATTGGGAGAATCTTTGGTTCTCAAGAACAAGGCTCCTAGATGGCATGAACAACTTCAATGTTGGTGCTTGAACTTCAGAGGGCGTGTGACAGTGGCCTCTGTAAAGAATTTCCAACTCGTGGCCGATGTTGATCCAGCCCTCGACGTGTCAGTTGAAGAAAAAGAGAAGATAATATTGCAGTTTGGGAAAATTGGAAAGGACATCTTCACGATGGATTATCGCTACCCGCTCTCCACTTTCCAAGCCTTTGCTATCTGCTTAAGCAGCTTTGACACCAAACCAGCCTCCTCTTACTTTGAAGCCTTTTCAACTGGAAGCTGCAAGAGGACGGAGGTTTATACCTCGGCGCTAGAAATCGAAGCTTTGCCATTTCCATGTTCTTACTTGATCAAGAAGACATCTCTTCTCTTATCCCGGCATTGA 1272 45.52 MSFKSLFRDLREIKDGIRIKPKRGGEGRNWQSRTRSHIAPDEVPPQPEAIQQGQWASLPPELLLDIIRRVEESETSWPARTVVLFCASVCKSWRNITQEIVKTPEQCGRLTFPISLKQPGPRDSPIQCYVRRHRATSTYLLYSGLVPSENEGDKLLLAAKRVRRATGTDFVISLVADDFSWACSTYVGKLRSNFFGTRFTMYDSQPPVLTAGQQNNQSNRRFHAKQVSPTMSACNYTGGNAPTPTSFSSCLDGHHHPPLPASKGKEPDIDFSSTSITVAPVQELGESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVADVDPALDVSVEEKEKIILQFGKIGKDIFTMDYRYPLSTFQAFAICLSSFDTKPASSYFEAFSTGSCKRTEVYTSALEIEALPFPCSYLIKKTSLLLSRH 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32309656 32313860 - CcPI632755_04g017200.1 Cco04g1720 176945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1720 423 CDD F-box_AtTLP-like 55 99 - -
Cco04g1720 423 Gene3D - 48 101 - -
Cco04g1720 423 Pfam F-box domain 55 97 IPR001810 GO:0005515(InterPro)
Cco04g1720 423 MobiDBLite consensus disorder prediction 22 46 - -
Cco04g1720 423 ProSitePatterns Tub family signature 1. 308 321 IPR018066 -
Cco04g1720 423 PRINTS Tubby superfamily signature 290 307 IPR000007 -
Cco04g1720 423 PRINTS Tubby superfamily signature 308 324 IPR000007 -
Cco04g1720 423 PRINTS Tubby superfamily signature 337 356 IPR000007 -
Cco04g1720 423 PRINTS Tubby superfamily signature 358 380 IPR000007 -
Cco04g1720 423 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Cco04g1720 423 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Cco04g1720 423 SUPERFAMILY F-box domain 49 98 IPR036047 GO:0005515(InterPro)
Cco04g1720 423 Gene3D Tubby Protein; Chain A 113 380 IPR025659 -
Cco04g1720 423 MobiDBLite consensus disorder prediction 247 267 - -
Cco04g1720 423 PANTHER TUBBY-RELATED 46 378 - -
Cco04g1720 423 Pfam Tub family 116 375 IPR000007 -
Cco04g1720 423 SUPERFAMILY Tubby C-terminal domain-like 104 378 IPR025659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1720 Cco-Chr4:32309656 Cco08g0837 Cco-Chr8:20209781 7.20E-97 dispersed
Cco04g1720 Cco-Chr4:32309656 Cco05g2127 Cco-Chr5:30253926 3.80E-122 wgd
Cco04g1720 Cco-Chr4:32309656 Cco07g0911 Cco-Chr7:21060072 1.10E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59112 PF01167 Tub 8.60E-83 CL0395 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1720 K19600 - csv:101221704 704.131