Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1720 ATGTCCTTCAAAAGCCTTTTTCGTGACCTAAGGGAAATAAAAGATGGAATTAGAATCAAACCGAAACGAGGGGGAGAAGGGAGGAACTGGCAAAGTCGTACAAGGTCACATATTGCACCTGATGAAGTGCCTCCCCAGCCTGAAGCAATTCAACAAGGGCAGTGGGCAAGCTTGCCTCCTGAGTTGCTTCTGGACATAATACGAAGAGTTGAAGAGAGTGAAACCTCATGGCCAGCTAGGACTGTTGTCCTTTTTTGTGCTTCAGTGTGCAAGTCATGGAGAAACATTACACAGGAAATTGTTAAAACTCCCGAGCAGTGTGGAAGGCTCACGTTTCCCATTTCACTGAAACAGCCGGGACCTCGAGACTCTCCAATTCAGTGCTATGTTAGAAGGCACAGAGCAACTTCAACCTATCTTCTATACTCCGGATTGGTGCCTTCGGAGAATGAAGGTGATAAGCTCTTATTAGCAGCCAAGAGAGTAAGAAGGGCTACAGGTACAGATTTTGTTATATCTCTGGTAGCTGATGATTTTTCTTGGGCCTGCAGTACCTATGTGGGTAAATTAAGGTCCAATTTTTTTGGCACAAGGTTCACCATGTATGATAGTCAACCACCAGTTCTCACTGCAGGACAACAGAACAATCAATCAAATCGTAGGTTTCATGCCAAGCAAGTCTCTCCAACAATGTCAGCTTGTAACTACACTGGAGGAAATGCACCGACACCGACCTCATTCTCATCCTGTCTTGATGGCCATCACCACCCCCCTTTACCGGCTTCTAAAGGAAAGGAGCCAGACATAGATTTCAGTTCCACAAGTATCACTGTGGCACCAGTTCAAGAATTGGGAGAATCTTTGGTTCTCAAGAACAAGGCTCCTAGATGGCATGAACAACTTCAATGTTGGTGCTTGAACTTCAGAGGGCGTGTGACAGTGGCCTCTGTAAAGAATTTCCAACTCGTGGCCGATGTTGATCCAGCCCTCGACGTGTCAGTTGAAGAAAAAGAGAAGATAATATTGCAGTTTGGGAAAATTGGAAAGGACATCTTCACGATGGATTATCGCTACCCGCTCTCCACTTTCCAAGCCTTTGCTATCTGCTTAAGCAGCTTTGACACCAAACCAGCCTCCTCTTACTTTGAAGCCTTTTCAACTGGAAGCTGCAAGAGGACGGAGGTTTATACCTCGGCGCTAGAAATCGAAGCTTTGCCATTTCCATGTTCTTACTTGATCAAGAAGACATCTCTTCTCTTATCCCGGCATTGA 1272 45.52 MSFKSLFRDLREIKDGIRIKPKRGGEGRNWQSRTRSHIAPDEVPPQPEAIQQGQWASLPPELLLDIIRRVEESETSWPARTVVLFCASVCKSWRNITQEIVKTPEQCGRLTFPISLKQPGPRDSPIQCYVRRHRATSTYLLYSGLVPSENEGDKLLLAAKRVRRATGTDFVISLVADDFSWACSTYVGKLRSNFFGTRFTMYDSQPPVLTAGQQNNQSNRRFHAKQVSPTMSACNYTGGNAPTPTSFSSCLDGHHHPPLPASKGKEPDIDFSSTSITVAPVQELGESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVADVDPALDVSVEEKEKIILQFGKIGKDIFTMDYRYPLSTFQAFAICLSSFDTKPASSYFEAFSTGSCKRTEVYTSALEIEALPFPCSYLIKKTSLLLSRH 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32309656 32313860 - CcPI632755_04g017200.1 Cco04g1720 176945

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1720 423 CDD F-box_AtTLP-like 55 99 - -
Cco04g1720 423 Gene3D - 48 101 - -
Cco04g1720 423 Pfam F-box domain 55 97 IPR001810 GO:0005515(InterPro)
Cco04g1720 423 MobiDBLite consensus disorder prediction 22 46 - -
Cco04g1720 423 ProSitePatterns Tub family signature 1. 308 321 IPR018066 -
Cco04g1720 423 PRINTS Tubby superfamily signature 290 307 IPR000007 -
Cco04g1720 423 PRINTS Tubby superfamily signature 308 324 IPR000007 -
Cco04g1720 423 PRINTS Tubby superfamily signature 337 356 IPR000007 -
Cco04g1720 423 PRINTS Tubby superfamily signature 358 380 IPR000007 -
Cco04g1720 423 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Cco04g1720 423 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Cco04g1720 423 SUPERFAMILY F-box domain 49 98 IPR036047 GO:0005515(InterPro)
Cco04g1720 423 Gene3D Tubby Protein; Chain A 113 380 IPR025659 -
Cco04g1720 423 MobiDBLite consensus disorder prediction 247 267 - -
Cco04g1720 423 PANTHER TUBBY-RELATED 46 378 - -
Cco04g1720 423 Pfam Tub family 116 375 IPR000007 -
Cco04g1720 423 SUPERFAMILY Tubby C-terminal domain-like 104 378 IPR025659 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1720 K19600 - - csv:101221704 704.131
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1720 Cco-Chr4:32309656 Cco08g0837 Cco-Chr8:20209781 7.20E-97 dispersed
Cco04g1720 Cco-Chr4:32309656 Cco05g2127 Cco-Chr5:30253926 3.80E-122 wgd
Cco04g1720 Cco-Chr4:32309656 Cco07g0911 Cco-Chr7:21060072 1.10E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g987 . Blo16g00048 . . . . . . . . . Cma07g00481 . Car07g00424 . Cpe19g00814 . Bhi03g01306 . . . Hepe04g1521 . . Cla01g01915 Cam01g2002 Cec04g1658 Cco04g1720 Clacu01g2022 Cmu01g1898 Cre04g1574 . . Cone6ag1629 Cone9ag1554 Lsi01g00669 . Chy07g01239 Cme08g00854 . . Bda11g01863 . . . . . . . Cmo07g00480 . . . . . . . . . . . . . . . . . . . . Lsi07g00258 Csa06g03246 Chy02g00642 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco08g0447 . 1 430 TUB Transcription Factor Family AT1G76900 72.5 2.2e-176 615.5
Cco05g1156 . 1 428 TUB Transcription Factor Family AT1G76900 69.7 2.2e-168 589.0
Cco08g0837 . 78 504 TUB Transcription Factor Family AT1G76900 69.0 7.9e-166 580.5
Cco05g0677 . 13 387 TUB Transcription Factor Family AT1G76900 51.2 8.6e-112 401.0
Cco05g1156 . 174 428 TUB Transcription Factor Family AT1G25280 74.3 1.8e-101 365.9
Cco08g0447 . 173 430 TUB Transcription Factor Family AT1G25280 67.3 1.4e-93 339.7
Cco08g0837 . 247 504 TUB Transcription Factor Family AT1G25280 70.4 2.4e-93 339.0
Cco05g0677 . 154 387 TUB Transcription Factor Family AT1G25280 53.6 1.1e-69 260.4
Cco05g2127 . 186 413 TUB Transcription Factor Family AT1G25280 53.8 1.9e-66 249.6
Cco06g0552 . 154 362 TUB Transcription Factor Family AT1G25280 50.6 1.1e-53 207.2
Cco05g0677 . 98 387 TUB Transcription Factor Family AT5G18680 62.1 4.3e-96 348.2
Cco06g0552 . 98 362 TUB Transcription Factor Family AT5G18680 61.0 6.2e-87 317.8
Cco08g0837 . 184 504 TUB Transcription Factor Family AT5G18680 51.8 3.8e-84 308.5
Cco08g0447 . 112 430 TUB Transcription Factor Family AT5G18680 53.1 1.1e-83 307.0
Cco05g1156 . 113 428 TUB Transcription Factor Family AT5G18680 52.8 4.2e-83 305.1
Cco05g2127 . 122 413 TUB Transcription Factor Family AT5G18680 51.9 4.5e-77 285.0
Cco07g1101 . 117 385 TUB Transcription Factor Family AT5G18680 50.7 1.7e-68 256.5
Cco05g2127 . 8 413 TUB Transcription Factor Family AT2G18280 59.0 4.5e-125 444.9
Cco04g1720 . 1 378 TUB Transcription Factor Family AT2G18280 58.4 5.5e-123 438.0
Cco05g1156 . 1 428 TUB Transcription Factor Family AT2G18280 52.9 4.8e-119 424.9
Cco08g0447 . 1 430 TUB Transcription Factor Family AT2G18280 51.8 2.5e-115 412.5
Cco05g0677 . 1 387 TUB Transcription Factor Family AT2G18280 53.6 3.2e-115 412.1
Cco08g0837 . 79 504 TUB Transcription Factor Family AT2G18280 50.8 1.3e-111 400.2
Cco06g0552 . 1 362 TUB Transcription Factor Family AT2G18280 51.3 2.9e-100 362.5
Cco05g0677 . 1 387 TUB Transcription Factor Family AT2G47900 68.7 5.8e-160 560.8
Cco06g0552 . 1 362 TUB Transcription Factor Family AT2G47900 67.0 8.1e-146 513.8
Cco08g0447 . 1 430 TUB Transcription Factor Family AT2G47900 55.3 1.1e-131 466.8
Cco05g1156 . 1 428 TUB Transcription Factor Family AT2G47900 56.4 6.2e-130 461.1
Cco08g0837 . 78 504 TUB Transcription Factor Family AT2G47900 56.1 5.8e-128 454.5
Cco05g2127 . 17 413 TUB Transcription Factor Family AT2G47900 55.4 7.9e-117 417.5
Cco07g1101 . 53 385 TUB Transcription Factor Family AT2G47900 52.4 7.2e-102 367.9
Cco07g0911 . 152 285 TUB Transcription Factor Family AT2G47900 57.9 1.2e-43 174.5
Cco09g0331 . 82 297 TUB Transcription Factor Family AT1G16070 61.8 3.0e-73 272.3
Cco05g1156 . 66 428 TUB Transcription Factor Family AT1G43640 67.7 5.5e-146 514.2
Cco08g0447 . 67 430 TUB Transcription Factor Family AT1G43640 69.7 9.5e-146 513.5
Cco08g0837 . 137 504 TUB Transcription Factor Family AT1G43640 66.3 6.3e-142 500.7
Cco05g0677 . 49 387 TUB Transcription Factor Family AT1G43640 53.4 3.6e-105 378.6
Cco05g2127 . 75 413 TUB Transcription Factor Family AT1G43640 50.4 6.0e-100 361.3
Cco06g0552 . 49 362 TUB Transcription Factor Family AT1G43640 50.7 1.9e-93 339.7
Cco05g2127 . 41 413 TUB Transcription Factor Family AT1G47270 64.2 1.0e-134 476.9
Cco05g1156 . 1 428 TUB Transcription Factor Family AT1G47270 52.1 2.1e-114 409.5
Cco08g0837 . 120 504 TUB Transcription Factor Family AT1G47270 55.0 1.5e-112 403.3
Cco08g0447 . 30 430 TUB Transcription Factor Family AT1G47270 51.5 4.3e-112 401.7
Cco05g0677 . 22 387 TUB Transcription Factor Family AT1G47270 52.3 5.6e-104 374.8
Cco04g1720 . 33 377 TUB Transcription Factor Family AT1G47270 51.6 2.9e-100 362.5
Cco07g1101 . 1 385 TUB Transcription Factor Family AT1G53320 71.2 1.6e-156 549.3
Cco05g0677 . 98 387 TUB Transcription Factor Family AT3G06380 63.4 3.8e-97 351.7
Cco05g1156 . 117 428 TUB Transcription Factor Family AT3G06380 53.8 2.0e-82 302.8
Cco06g0552 . 98 362 TUB Transcription Factor Family AT3G06380 60.2 2.6e-82 302.4
Cco08g0837 . 188 504 TUB Transcription Factor Family AT3G06380 53.0 1.0e-81 300.4
Cco08g0447 . 116 430 TUB Transcription Factor Family AT3G06380 50.2 9.4e-80 293.9
Cco05g2127 . 126 413 TUB Transcription Factor Family AT3G06380 52.6 1.4e-78 290.0
Cco07g0911 . 152 285 TUB Transcription Factor Family AT3G06380 53.5 8.0e-39 157.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002587 1 10 1 0 0 1 3 2 1 2 1 1 3 2 2 3 1 2 3 2 2 0 2 2 2 2 2 2 3 1 59
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59112 PF01167 Tub 8.60E-83 CL0395 Cco TF