Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g1720 | ATGTCCTTCAAAAGCCTTTTTCGTGACCTAAGGGAAATAAAAGATGGAATTAGAATCAAACCGAAACGAGGGGGAGAAGGGAGGAACTGGCAAAGTCGTACAAGGTCACATATTGCACCTGATGAAGTGCCTCCCCAGCCTGAAGCAATTCAACAAGGGCAGTGGGCAAGCTTGCCTCCTGAGTTGCTTCTGGACATAATACGAAGAGTTGAAGAGAGTGAAACCTCATGGCCAGCTAGGACTGTTGTCCTTTTTTGTGCTTCAGTGTGCAAGTCATGGAGAAACATTACACAGGAAATTGTTAAAACTCCCGAGCAGTGTGGAAGGCTCACGTTTCCCATTTCACTGAAACAGCCGGGACCTCGAGACTCTCCAATTCAGTGCTATGTTAGAAGGCACAGAGCAACTTCAACCTATCTTCTATACTCCGGATTGGTGCCTTCGGAGAATGAAGGTGATAAGCTCTTATTAGCAGCCAAGAGAGTAAGAAGGGCTACAGGTACAGATTTTGTTATATCTCTGGTAGCTGATGATTTTTCTTGGGCCTGCAGTACCTATGTGGGTAAATTAAGGTCCAATTTTTTTGGCACAAGGTTCACCATGTATGATAGTCAACCACCAGTTCTCACTGCAGGACAACAGAACAATCAATCAAATCGTAGGTTTCATGCCAAGCAAGTCTCTCCAACAATGTCAGCTTGTAACTACACTGGAGGAAATGCACCGACACCGACCTCATTCTCATCCTGTCTTGATGGCCATCACCACCCCCCTTTACCGGCTTCTAAAGGAAAGGAGCCAGACATAGATTTCAGTTCCACAAGTATCACTGTGGCACCAGTTCAAGAATTGGGAGAATCTTTGGTTCTCAAGAACAAGGCTCCTAGATGGCATGAACAACTTCAATGTTGGTGCTTGAACTTCAGAGGGCGTGTGACAGTGGCCTCTGTAAAGAATTTCCAACTCGTGGCCGATGTTGATCCAGCCCTCGACGTGTCAGTTGAAGAAAAAGAGAAGATAATATTGCAGTTTGGGAAAATTGGAAAGGACATCTTCACGATGGATTATCGCTACCCGCTCTCCACTTTCCAAGCCTTTGCTATCTGCTTAAGCAGCTTTGACACCAAACCAGCCTCCTCTTACTTTGAAGCCTTTTCAACTGGAAGCTGCAAGAGGACGGAGGTTTATACCTCGGCGCTAGAAATCGAAGCTTTGCCATTTCCATGTTCTTACTTGATCAAGAAGACATCTCTTCTCTTATCCCGGCATTGA | 1272 | 45.52 | MSFKSLFRDLREIKDGIRIKPKRGGEGRNWQSRTRSHIAPDEVPPQPEAIQQGQWASLPPELLLDIIRRVEESETSWPARTVVLFCASVCKSWRNITQEIVKTPEQCGRLTFPISLKQPGPRDSPIQCYVRRHRATSTYLLYSGLVPSENEGDKLLLAAKRVRRATGTDFVISLVADDFSWACSTYVGKLRSNFFGTRFTMYDSQPPVLTAGQQNNQSNRRFHAKQVSPTMSACNYTGGNAPTPTSFSSCLDGHHHPPLPASKGKEPDIDFSSTSITVAPVQELGESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVADVDPALDVSVEEKEKIILQFGKIGKDIFTMDYRYPLSTFQAFAICLSSFDTKPASSYFEAFSTGSCKRTEVYTSALEIEALPFPCSYLIKKTSLLLSRH | 423 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 32309656 | 32313860 | - | CcPI632755_04g017200.1 | Cco04g1720 | 176945 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g1720 | 423 | CDD | F-box_AtTLP-like | 55 | 99 | - | - | |
Cco04g1720 | 423 | Gene3D | - | 48 | 101 | - | - | |
Cco04g1720 | 423 | Pfam | F-box domain | 55 | 97 | IPR001810 | GO:0005515(InterPro) | |
Cco04g1720 | 423 | MobiDBLite | consensus disorder prediction | 22 | 46 | - | - | |
Cco04g1720 | 423 | ProSitePatterns | Tub family signature 1. | 308 | 321 | IPR018066 | - | |
Cco04g1720 | 423 | PRINTS | Tubby superfamily signature | 290 | 307 | IPR000007 | - | |
Cco04g1720 | 423 | PRINTS | Tubby superfamily signature | 308 | 324 | IPR000007 | - | |
Cco04g1720 | 423 | PRINTS | Tubby superfamily signature | 337 | 356 | IPR000007 | - | |
Cco04g1720 | 423 | PRINTS | Tubby superfamily signature | 358 | 380 | IPR000007 | - | |
Cco04g1720 | 423 | PRINTS | Tubby superfamily signature | 170 | 186 | IPR000007 | - | |
Cco04g1720 | 423 | PRINTS | Tubby superfamily signature | 186 | 210 | IPR000007 | - | |
Cco04g1720 | 423 | SUPERFAMILY | F-box domain | 49 | 98 | IPR036047 | GO:0005515(InterPro) | |
Cco04g1720 | 423 | Gene3D | Tubby Protein; Chain A | 113 | 380 | IPR025659 | - | |
Cco04g1720 | 423 | MobiDBLite | consensus disorder prediction | 247 | 267 | - | - | |
Cco04g1720 | 423 | PANTHER | TUBBY-RELATED | 46 | 378 | - | - | |
Cco04g1720 | 423 | Pfam | Tub family | 116 | 375 | IPR000007 | - | |
Cco04g1720 | 423 | SUPERFAMILY | Tubby C-terminal domain-like | 104 | 378 | IPR025659 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g1720 | Cco-Chr4:32309656 | Cco08g0837 | Cco-Chr8:20209781 | 7.20E-97 | dispersed | |
Cco04g1720 | Cco-Chr4:32309656 | Cco05g2127 | Cco-Chr5:30253926 | 3.80E-122 | wgd | |
Cco04g1720 | Cco-Chr4:32309656 | Cco07g0911 | Cco-Chr7:21060072 | 1.10E-60 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59112 | PF01167 | Tub | 8.60E-83 | CL0395 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g1720 | K19600 | - | csv:101221704 | 704.131 |