Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1722 ATGGAAGAGACAACCAATCTCTTAGTTGACATTCAAAAACTAAATCAAGAAGCGAAATCAACTCACAACGCCAAAATCCTCCGCGGAATAAGAGACAGAATCGACTCCGACATGGTATCAATCCTCCGCAGAGCAAGAATCCTCAAAGAAAAATTGGCCTCTCTCGACCAATCCAACACCGCGAACCGCCTGATCTCCGTCGCGTACGGCGAAGGAACCGCTGTGGACCGGACAAGAACTTCAGTCACGAACGGACTGAGAGTGAAATTGAGAGAAATGATGAACGAATTTCAGAGATTGAGAGAAAAAGTTGTGGCGGATCACAAGGAGGATCTGAGAAGAAGATATTTTGGTGCAAATGGGGAACAACCCAGTGACGAACAAGTGGAGAAGATTATGACTGGGAGTTTGAAATTGGAAACGTTTGAAGGGAAATTGAGCGAGACCGAGTTAGGGGACCGAGTCAGGCACGAGTCAGTGATGGATATACAGAGGAGTTTGAATAAGCTTCATCAGGTGTTTTTGGATATGGCGATTTTGGTTGAGAGTGAAGGGGAGAAGGTGGAGGACATTGAGGAGAATGTAGCGAAAGCTGGGAAGTTCATCAATGGCGGAACTCGAAGCCTTCATTATGCGAACCAGATGAAGAGGAAGAACAAGAAATGGGTGTATTGGGTTTGGGCTATCATTTTTGTTATATTGCTTGTTTGCATTGTTTCAATGTTGGTTTGTTGA 735 44.76 MEETTNLLVDIQKLNQEAKSTHNAKILRGIRDRIDSDMVSILRRARILKEKLASLDQSNTANRLISVAYGEGTAVDRTRTSVTNGLRVKLREMMNEFQRLREKVVADHKEDLRRRYFGANGEQPSDEQVEKIMTGSLKLETFEGKLSETELGDRVRHESVMDIQRSLNKLHQVFLDMAILVESEGEKVEDIEENVAKAGKFINGGTRSLHYANQMKRKNKKWVYWVWAIIFVILLVCIVSMLVC 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32322285 32323019 - CcPI632755_04g017220.1 Cco04g1722 176947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1722 244 Gene3D - 145 243 - -
Cco04g1722 244 Pfam Syntaxin 2 185 IPR006011 GO:0016020(InterPro)
Cco04g1722 244 Coils Coil 83 103 - -
Cco04g1722 244 SUPERFAMILY t-snare proteins 10 205 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cco04g1722 244 FunFam Syntaxin 132 143 243 - -
Cco04g1722 244 CDD SynN 1 137 IPR006011 GO:0016020(InterPro)
Cco04g1722 244 Pfam SNARE domain 187 236 IPR000727 -
Cco04g1722 244 CDD SNARE_syntaxin1-like 156 209 - -
Cco04g1722 244 SMART SynN_4 1 109 IPR006011 GO:0016020(InterPro)
Cco04g1722 244 PANTHER SYNTAXIN 4 233 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cco04g1722 244 Gene3D - 1 115 - -
Cco04g1722 244 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 156 212 IPR000727 -
Cco04g1722 244 SMART tSNARE_6 145 212 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1261 Cco-Chr4:27965463 Cco04g1722 Cco-Chr4:32322285 2.90E-39 dispersed
Cco04g1722 Cco-Chr4:32322285 Cco10g1337 Cco-Chr10:26334438 3.60E-32 dispersed
Cco04g1722 Cco-Chr4:32322285 Cco10g1812 Cco-Chr10:31699964 5.30E-44 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1722 K08486 - csv:101217836 441.81