Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g1722 | ATGGAAGAGACAACCAATCTCTTAGTTGACATTCAAAAACTAAATCAAGAAGCGAAATCAACTCACAACGCCAAAATCCTCCGCGGAATAAGAGACAGAATCGACTCCGACATGGTATCAATCCTCCGCAGAGCAAGAATCCTCAAAGAAAAATTGGCCTCTCTCGACCAATCCAACACCGCGAACCGCCTGATCTCCGTCGCGTACGGCGAAGGAACCGCTGTGGACCGGACAAGAACTTCAGTCACGAACGGACTGAGAGTGAAATTGAGAGAAATGATGAACGAATTTCAGAGATTGAGAGAAAAAGTTGTGGCGGATCACAAGGAGGATCTGAGAAGAAGATATTTTGGTGCAAATGGGGAACAACCCAGTGACGAACAAGTGGAGAAGATTATGACTGGGAGTTTGAAATTGGAAACGTTTGAAGGGAAATTGAGCGAGACCGAGTTAGGGGACCGAGTCAGGCACGAGTCAGTGATGGATATACAGAGGAGTTTGAATAAGCTTCATCAGGTGTTTTTGGATATGGCGATTTTGGTTGAGAGTGAAGGGGAGAAGGTGGAGGACATTGAGGAGAATGTAGCGAAAGCTGGGAAGTTCATCAATGGCGGAACTCGAAGCCTTCATTATGCGAACCAGATGAAGAGGAAGAACAAGAAATGGGTGTATTGGGTTTGGGCTATCATTTTTGTTATATTGCTTGTTTGCATTGTTTCAATGTTGGTTTGTTGA | 735 | 44.76 | MEETTNLLVDIQKLNQEAKSTHNAKILRGIRDRIDSDMVSILRRARILKEKLASLDQSNTANRLISVAYGEGTAVDRTRTSVTNGLRVKLREMMNEFQRLREKVVADHKEDLRRRYFGANGEQPSDEQVEKIMTGSLKLETFEGKLSETELGDRVRHESVMDIQRSLNKLHQVFLDMAILVESEGEKVEDIEENVAKAGKFINGGTRSLHYANQMKRKNKKWVYWVWAIIFVILLVCIVSMLVC | 244 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 32322285 | 32323019 | - | CcPI632755_04g017220.1 | Cco04g1722 | 176947 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g1722 | 244 | Gene3D | - | 145 | 243 | - | - | |
Cco04g1722 | 244 | Pfam | Syntaxin | 2 | 185 | IPR006011 | GO:0016020(InterPro) | |
Cco04g1722 | 244 | Coils | Coil | 83 | 103 | - | - | |
Cco04g1722 | 244 | SUPERFAMILY | t-snare proteins | 10 | 205 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
Cco04g1722 | 244 | FunFam | Syntaxin 132 | 143 | 243 | - | - | |
Cco04g1722 | 244 | CDD | SynN | 1 | 137 | IPR006011 | GO:0016020(InterPro) | |
Cco04g1722 | 244 | Pfam | SNARE domain | 187 | 236 | IPR000727 | - | |
Cco04g1722 | 244 | CDD | SNARE_syntaxin1-like | 156 | 209 | - | - | |
Cco04g1722 | 244 | SMART | SynN_4 | 1 | 109 | IPR006011 | GO:0016020(InterPro) | |
Cco04g1722 | 244 | PANTHER | SYNTAXIN | 4 | 233 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
Cco04g1722 | 244 | Gene3D | - | 1 | 115 | - | - | |
Cco04g1722 | 244 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 156 | 212 | IPR000727 | - | |
Cco04g1722 | 244 | SMART | tSNARE_6 | 145 | 212 | IPR000727 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g1261 | Cco-Chr4:27965463 | Cco04g1722 | Cco-Chr4:32322285 | 2.90E-39 | dispersed | |
Cco04g1722 | Cco-Chr4:32322285 | Cco10g1337 | Cco-Chr10:26334438 | 3.60E-32 | dispersed | |
Cco04g1722 | Cco-Chr4:32322285 | Cco10g1812 | Cco-Chr10:31699964 | 5.30E-44 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g1722 | K08486 | - | csv:101217836 | 441.81 |