Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1727 ATGATTGATCCCATGCGGAAGGAAAACAGAGTTCATGTCTCTCGGGAAGGTGGAGGAAGAAGAACAAGGGTGAATATGGAAAACAGTGCTGGAGGAGGAAATTCTGCAAATATCGGATTCCCTAGGATTAGGCTCAATGAAAGAATTCTTTCTTCCATGTCTCGAAGATCTGTCGCCGCTCACCCTTGGCACGATTTGGAGATTGGACCTGGTGCACCGTCAGTTTTCAATTGTGTTGTTGAAATTGGCAAAGGCAGCAAGGTTAAATACGAGCTGGACAAGGCCAGTGGCCTTATCAAAGTCGACCGCGTACTTTACTCATCAGTTGTTTACCCACACAATTATGGTTTCATCCCACGTACAATTTGTGAAGACAGTGATCCTATGGATGTTTTGGTACTGATGCAGGAGCCTGTGCTACCTGGATCTTTCCTCCGAGCTCGTGCTATTGGATTGATGCCTATGATTGATCAAGGAGAAAGGGATGACAAAATCATAGCAGTATGTGCTGATGACCCTGAATTCCGCCACTATACGGACATCAAGGAGATTCCCCCACACCGGCTAGCCGAAATCCGCCGATTCTTCGAGGACTACAAGAAGAACGAAAACAAGAAAGTCGATGTGGAAGACTTCCTGCCAGCGGAGGCTGCCACTGATGCCATCAAGTACTCCATGGATTTGTATGCTGCCTACATAGTTGAAAGCTTGAGGCAAAAGATTCCGTTTGACACTCACCGGTTACCCGCTCCCCCTGTTTCCGTTCTCTCTCTCTCTGTTCATTCCCTTTCCTCTTCTCTGCCTCCCGGACCAGCCGGTCTCCGTTCGTCGTCGTCTCGTCTTGCATCTGACCCTGTTGCAGAGTGGCTATGGTTTTCTCAGCAGACTGAAGAAAAAAAAGAGAGAGAAAGAGAACTTCTGTACTACGAGGAGGGTTCTACCTCGCTTTCTAAGAAAATCTGTAATGGCAGTAATGGCGGTGGTCCTTTTGTAGCTCAAACTATCTACGACGGCGTTTATGGCGGTCCTCCCAAGTTTGGAGTCTCTGCTTTGTCTCCTCGTTTCGAAGACTACGGTGAGATTTTCGGGAGCTTCCACGCCCTTCGTGCTTCCTCGATTCCGATTCTTGATCTTCCTGCTGTCGATGAATCTGAGGTTTTCTTCGACGCTCGGAGCTCTGCATTTGACTATTCGGAAGTTTTTGGCGGGTTTGATGGTCTGGATTTTGCGATTTCTTATGACGAACTGGTTGGCCCATCCAAGGCCGTTGATGATGGCTCTTCCGACGAAGCTTGGACTCCAGCAGGAACTGAATCTTTGTCAGACTGTTCGGATCATTCTGGAAATTCTCATTGTATGTCAAATGGAGACTCTAATCAGTCATTTGGAGGAAGCACTGAGTTTTGCATATCGTATAACAAGGTTAACCGAGAAAGCAATGGAAATATATCAAATGGGAAGATACACGTAACCCAGTTGGAGATGCGTCCTGGATTCTCATATCTGGTTGATGAAGCAAGCCCCTCGCCGAAGGCAACAGATGATGATCCATCACTGCAGACCAATGATGATAACTATCTCAATATAGATTTTGATACAGGAAAGGTGAAGGGCAAACATCCAAGGAACACAATGCCACCCCTAGTGGACAGTAATGACTCTGGACCGTTATTCGAGGATAACCTTATTTCTCAAAATGGATGTGGTAGAGGTGTTTGTCATTCTCACGAGGATTTCATAACCGTATCTGAAATAAGCCTTAGAACTGAGCCCTCTCAAGTGCCACCGCCTTCTCGACCTCCTCCCAAGTTTGCTACCAAAAAGGGGGACTACTCTAAAAGGACTTTGAGTTGTGGGGAAGCTGCTTCTTTTGAAATTTCGGACGACCATTCTCTTCCTTTATTTGATGTGGTGGTAGATGCTAGCTCATCTGCAGCGGCCTCTGCTGCAGCGATGAAAGAAGCAATGGATAAAGCTCAAGCACAGTTACAAAATGCAAAAGATTTGTGGGGGAGGAAGAAGGAAGGGGTCCATGGACGGATGAGACTGGATTCAAAAAATGATATGAGAGAAAAGGAAGGAAATTTGACTAAGATTCCAAATCGATTTAAGAGTTGGGCCAATGAAAGTGCGCAGGGTATTGGGGAAATTCATGGCAATGAAATGAATTTGCCTGCTAGAGAGGAGAGGCACAAGGATGTGAGAGCAACTGAAGTTTGTTCAACACACTATGGAGAAGAGGAACTTTTAACAGCTGCTGAAAAGACCGTACCAGTTAGAAGTGGGAGTAGATTTCTTGTGTCCGAGAACTATGATTGTTGCAGTGAATGGAAAGATGCCACAGAGTTTTTTGAATTGGCAAGAGCAGATATATCAGAAAAGGAATTCGAGTCTCTGAGTAATGATGCAATTTCCAACTTTGTGACTGGACAAATGGAAATAGAGACCAATGCATGGGAGAACGATAAAGACCAAGACAAGAAAGCAAAACCATTCCATACAGCTCATGTTCTGAATGAGGAGGTGAAGCATTTGGAGAATCTGGTCCAGGGAAAGGAGGAAGATAAGATAAAACGAAAGCCAAACAAAAACGAGACTAGGCAAGAAGAGCAGGTGAAATTAAAATTTCACCAAGGTGTTTGTGACCTTGAAGCAAATGATAGAAAATTTGAAGTTGCTCAAGAGTTTGTGGAAGTAAAAAAGCAAATGTTTTATGCTAGTGAACCAGAGAAACGTGAAAAGCCTATTGAGTTTAGACAACTGGACAGTGAGCTAAAAGTTGAGCAACCTGTTTCACCAAGGGATATTGAACAAGAAAAGAAAAAGGTTGAAAGAAAGGAAAATGGAAATATCCTCAAGGAGTCTCATAGAAAAGAAAACAATGCAAATAAAATGGAAGCCACTGAGAATGAGAAAAGAGAGATGCCCACAGAGGCTTCTGAAAGGGAAAAACTTGAGCCAAAAATGAGGGTGTTCCTTGAGCAACCAGATGATAAGAAAAGACTGAATTTGGTTCTTGAGGATGACAACTTTAAGGGACAGATGGATCATGAAAGACAACTGGAAGGAGTTCAAGGGATGGAAGATCATGGGAAAAGGGGAAAGGAGGCTGCCAAAGTTGGAGTGAGTGAGACACCTGAATTAGCTCATGAGAGAGAAGATGGCAACAAATGGCCACAAGATTTTCAGTACAGAGAAGTATGTGAAAAAGGAGTTGATGATTCATTTCAGCATTTGAACATTGAAGGCATGCCAAGAGATGTGGGTAAGTGTAAAGTGACTCCGATGTTGGTTAAAGATTCACAAGATAGCGCAGATCTCAAGGGTACAAGTTTGGAGTATGATGAATTAGAGAGATTGGAGGACAGACACAAAGTAAATTCAACAATAGGATCTCAAGTATATGTGGAAGTGAGTGATTTGGGGACATTTGCTGCTGCATGTCAAATGAACAATGACAAAGACCATTTACCTATGGGACTAGCATGTCCAACGGGAATGTCTGAAGAATTCTCTGTTGTAGATGAAAGTGGAGAGAGGAAGACCATAGTTACAGTTAATGAAAATCTTCAATTTAACAAAAATCCTTGTGCGCCGAGTGTATGCCAGGCAGAGGTAGAACACCGTAAACTTCCAGTTGAAATGGAAGATGCAGATATTCAACTTTCTTTTGATGAATTGACTAAAAGAGCAGCCAAAGAAACAGGCTTTCAGCCCGGACCTGGACATACACAATCAGAACCAACTAATTCGGAAGATGCACTTTCATCTGAAAACTCAACAAGCATGGATGCGGGAGAGAACGTAGTTAAGATTGAAGATATGAAAACATCACTTCCTCTGGACAGAAGCAATGAGAAAGCAGGACAGGCTGATGAATGCATGGAAGAGTTTGTAGGGAGAAAGAAGTCTGTTACCAGAATGGGTTCTGATCCTGAACATCCAGGAAGCAACTTGTTCTGTCGTATGGAAGATAAAGCGAAGCCCTCTGACCAGGTTGAAGATAAGGGACAGAAAGTGTCCGTTCAGGGGGTCAATGTAAGGGCTGAAAAAGGAAGTGGATTGAAGTCAACTTGGCCAAATATTTCAGAAAGGACGCAAAAGAGTGGGGAATTCTCCCGTGAGGTCAATGCAAATCAGGCCCCAGAAAGAAAGGAAAAGATTGTAAACCAGAGCCATATATCTAAAGGAAAAGAGAGTGAGAGAGTGAGGAGTGAAGCAGAATTTGAGAACGACATTCTTCGAAAATTGGAAGAAGAGAGGGAGAGGGAAAGAGAGAGAGAAAAGGATAGAATGCCTATTGACAGAATTTCTCTTGAACCACGAGATAGAGTAGGTACCGAAGCTCGTGAAAGGGCAGAAAGGGCTGCTCTGGAGAGGATGACTGCTGAAGCCCGACAAAGAGCATTGGCTGAGGCACGTGAAAGATTGGAAAAGGCATGTGCAGAGGCGAGAGAAAATTCATTGGCTGGGAAGGCGGCAACTATGGAGGCAAGGGTAAAGGCAGAGCGTGCCGCTGTAGAAAGAGCAACTGCAGAGGCCAGGGAGCGAGCTGCGGAGAAAGCCATGTCTGACAAGACTTCCTTTGGGGCAAGAGAGAGAATGGAAAGATCTGTTTCTGACAAATTCTCTGCTTCTTCCAGAAATAATGAAATGAGACAGAAGTCTTCAACCTCCGGTCAGCCCAGCCTACAATCTCTGAGCTTTGGCTCTGCTGCAGCTTCAAGATATGCCTACTACTCGGCTTATGATGAGAGGAATGAGGGTGTTGATGGTGAATCGCCTCAAAGGTGTAAAGCCAGATTAGAGAGGCATCAAAGAACAGCAGAACGTGCAGCAAAAGCTCTGGCAGAAAAAAATATGCGTGATCTTCTGGCACAAAGAGAGCAAGCTGAGAGAAATAGATTAGCTGAGACATTGGATGCTGATGTTAGGAGATGGTCAAGTGGGAAGGAAGGAAACTTGCGTGCCTTGCTTTCTACATTGCAATATATCCTTGCACCTGATAGTGGTTGGCAGCCAATTCCCTTAACAGAAGTTATAACCGCCGCTGCTGTAAAGAAAGCGTACAGGAAAGCCACTCTGTGTGTTCATCCAGACAAATTGCAACAACGGGGTGCAAAAGGAACTGATGCTTCAGTTGCAGCCTCCATCATTGTTTGTTCACCTGTGGATGAGCATTGTGGTGGAGTAAACTGCCCCTCCTATATATACATATTTTCTTTTTCTGGAAAAGGAACACTGCCTCTAATATTCTGGGTTGTGATTCTCAGGAAGCTTGGAACAAATTCAACTCAGAGGAGCGGTAGCCTGAGGAGATGTCCTCACAGGTACGAGCGCCTCGGGGAGGATCCTACCGTTAGCTTGTTGGAAGGAAGGCTGAAGAGGGCAACCAGTTTGCCAACTCGAGTACTCGGTTCTGGCTCGAGGAAACTGACATCTGAGATTATATTTCCCGAGTTTGCTCAACCGAAACAGAAGCAGTCGAAGAAAGCTAACAAAGAAGGACACCCTCTTTTCAGTTTCTTTGATTTTCGCCGCAAGAGGAAGTCAACAGCCAGGCCTGAATTTGCAAGGTATCTTGAGTATTTGAAGGAAGGAGGACTGTGGGATTTGAAAGCGAATGCTCCTGTAATCTACTTTAAATGA 5649 44.49 MIDPMRKENRVHVSREGGGRRTRVNMENSAGGGNSANIGFPRIRLNERILSSMSRRSVAAHPWHDLEIGPGAPSVFNCVVEIGKGSKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRARAIGLMPMIDQGERDDKIIAVCADDPEFRHYTDIKEIPPHRLAEIRRFFEDYKKNENKKVDVEDFLPAEAATDAIKYSMDLYAAYIVESLRQKIPFDTHRLPAPPVSVLSLSVHSLSSSLPPGPAGLRSSSSRLASDPVAEWLWFSQQTEEKKERERELLYYEEGSTSLSKKICNGSNGGGPFVAQTIYDGVYGGPPKFGVSALSPRFEDYGEIFGSFHALRASSIPILDLPAVDESEVFFDARSSAFDYSEVFGGFDGLDFAISYDELVGPSKAVDDGSSDEAWTPAGTESLSDCSDHSGNSHCMSNGDSNQSFGGSTEFCISYNKVNRESNGNISNGKIHVTQLEMRPGFSYLVDEASPSPKATDDDPSLQTNDDNYLNIDFDTGKVKGKHPRNTMPPLVDSNDSGPLFEDNLISQNGCGRGVCHSHEDFITVSEISLRTEPSQVPPPSRPPPKFATKKGDYSKRTLSCGEAASFEISDDHSLPLFDVVVDASSSAAASAAAMKEAMDKAQAQLQNAKDLWGRKKEGVHGRMRLDSKNDMREKEGNLTKIPNRFKSWANESAQGIGEIHGNEMNLPAREERHKDVRATEVCSTHYGEEELLTAAEKTVPVRSGSRFLVSENYDCCSEWKDATEFFELARADISEKEFESLSNDAISNFVTGQMEIETNAWENDKDQDKKAKPFHTAHVLNEEVKHLENLVQGKEEDKIKRKPNKNETRQEEQVKLKFHQGVCDLEANDRKFEVAQEFVEVKKQMFYASEPEKREKPIEFRQLDSELKVEQPVSPRDIEQEKKKVERKENGNILKESHRKENNANKMEATENEKREMPTEASEREKLEPKMRVFLEQPDDKKRLNLVLEDDNFKGQMDHERQLEGVQGMEDHGKRGKEAAKVGVSETPELAHEREDGNKWPQDFQYREVCEKGVDDSFQHLNIEGMPRDVGKCKVTPMLVKDSQDSADLKGTSLEYDELERLEDRHKVNSTIGSQVYVEVSDLGTFAAACQMNNDKDHLPMGLACPTGMSEEFSVVDESGERKTIVTVNENLQFNKNPCAPSVCQAEVEHRKLPVEMEDADIQLSFDELTKRAAKETGFQPGPGHTQSEPTNSEDALSSENSTSMDAGENVVKIEDMKTSLPLDRSNEKAGQADECMEEFVGRKKSVTRMGSDPEHPGSNLFCRMEDKAKPSDQVEDKGQKVSVQGVNVRAEKGSGLKSTWPNISERTQKSGEFSREVNANQAPERKEKIVNQSHISKGKESERVRSEAEFENDILRKLEEEREREREREKDRMPIDRISLEPRDRVGTEARERAERAALERMTAEARQRALAEARERLEKACAEARENSLAGKAATMEARVKAERAAVERATAEARERAAEKAMSDKTSFGARERMERSVSDKFSASSRNNEMRQKSSTSGQPSLQSLSFGSAAASRYAYYSAYDERNEGVDGESPQRCKARLERHQRTAERAAKALAEKNMRDLLAQREQAERNRLAETLDADVRRWSSGKEGNLRALLSTLQYILAPDSGWQPIPLTEVITAAAVKKAYRKATLCVHPDKLQQRGAKGTDASVAASIIVCSPVDEHCGGVNCPSYIYIFSFSGKGTLPLIFWVVILRKLGTNSTQRSGSLRRCPHRYERLGEDPTVSLLEGRLKRATSLPTRVLGSGSRKLTSEIIFPEFAQPKQKQSKKANKEGHPLFSFFDFRRKRKSTARPEFARYLEYLKEGGLWDLKANAPVIYFK 1882
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32342844 32361306 + CcPI632755_04g017270.1 Cco04g1727 176952

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1727 1882 Coils Coil 649 669 - -
Cco04g1727 1882 MobiDBLite consensus disorder prediction 1239 1266 - -
Cco04g1727 1882 MobiDBLite consensus disorder prediction 502 553 - -
Cco04g1727 1882 Coils Coil 1599 1634 - -
Cco04g1727 1882 MobiDBLite consensus disorder prediction 423 448 - -
Cco04g1727 1882 MobiDBLite consensus disorder prediction 929 988 - -
Cco04g1727 1882 Hamap Inorganic pyrophosphatase [ppa]. 74 230 IPR008162 GO:0000287(InterPro)|GO:0004427(InterPro)|GO:0005737(InterPro)|GO:0006796(InterPro)
Cco04g1727 1882 Coils Coil 835 855 - -
Cco04g1727 1882 SUPERFAMILY Inorganic pyrophosphatase 55 237 IPR036649 GO:0000287(InterPro)|GO:0004427(InterPro)|GO:0005737(InterPro)|GO:0006796(InterPro)
Cco04g1727 1882 MobiDBLite consensus disorder prediction 513 528 - -
Cco04g1727 1882 MobiDBLite consensus disorder prediction 1542 1566 - -
Cco04g1727 1882 MobiDBLite consensus disorder prediction 1367 1459 - -
Cco04g1727 1882 Coils Coil 1400 1427 - -
Cco04g1727 1882 MobiDBLite consensus disorder prediction 1378 1459 - -
Cco04g1727 1882 MobiDBLite consensus disorder prediction 1 35 - -
Cco04g1727 1882 Gene3D Inorganic pyrophosphatase 57 235 IPR036649 GO:0000287(InterPro)|GO:0004427(InterPro)|GO:0005737(InterPro)|GO:0006796(InterPro)
Cco04g1727 1882 ProSitePatterns Inorganic pyrophosphatase signature. 125 131 - -
Cco04g1727 1882 Gene3D DnaJ domain 1607 1720 IPR036869 -
Cco04g1727 1882 FunFam Soluble inorganic pyrophosphatase 4 57 235 - -
Cco04g1727 1882 MobiDBLite consensus disorder prediction 432 448 - -
Cco04g1727 1882 CDD pyrophosphatase 75 227 IPR008162 GO:0000287(InterPro)|GO:0004427(InterPro)|GO:0005737(InterPro)|GO:0006796(InterPro)
Cco04g1727 1882 Pfam Inorganic pyrophosphatase 78 229 IPR008162 GO:0000287(InterPro)|GO:0004427(InterPro)|GO:0005737(InterPro)|GO:0006796(InterPro)
Cco04g1727 1882 MobiDBLite consensus disorder prediction 1234 1267 - -
Cco04g1727 1882 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 312 1707 - GO:0005737(PANTHER)|GO:0030276(PANTHER)|GO:0031982(PANTHER)|GO:0043231(PANTHER)|GO:0072318(PANTHER)|GO:0072583(PANTHER)
Cco04g1727 1882 MobiDBLite consensus disorder prediction 1 22 - -
Cco04g1727 1882 Coils Coil 1460 1487 - -
Cco04g1727 1882 MobiDBLite consensus disorder prediction 588 611 - -
Cco04g1727 1882 Coils Coil 1493 1513 - -
Cco04g1727 1882 MobiDBLite consensus disorder prediction 1517 1541 - -
Cco04g1727 1882 SUPERFAMILY Chaperone J-domain 1591 1707 IPR036869 -
Cco04g1727 1882 MobiDBLite consensus disorder prediction 1517 1566 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1727 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1727 Cco-Chr4:32342844 Cco08g0735 Cco-Chr8:18953585 4.40E-37 dispersed
Cco04g1038 Cco-Chr4:25917534 Cco04g1727 Cco-Chr4:32342844 6.80E-99 transposed
Cco06g0233 Cco-Chr6:2476424 Cco04g1727 Cco-Chr4:32342844 6.30E-98 transposed
Cco04g1727 Cco-Chr4:32342844 Cco05g2125 Cco-Chr5:30216994 1.40E-62 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1001 . Blo16g00054 . . . Bpe13g00436 . . . . . Cma07g00476 Car03g00672 Car07g00419 Sed14g1133 . . Bhi03g01325 Tan03g2000 Cmetu08g1336 . Hepe04g1527 . . Cla01g01921 Cam01g2007 Cec04g1666 Cco04g1727 Clacu01g2028 Cmu01g1903 Cre04g1578 . . . . . . . Cme08g00861 . . . . . . . . . Cmo03g00766 Cmo07g00476 . . . . . . . . . . . . . . . . . . . . . . Chy02g00632 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004571 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 41