Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1736 ATGGAGGTTTCCAAAATACTCCATATGAATTCAGGAGTTGGAGACAAAAGCTATGCCAAAAACTCCTTACTTCAGCAAAAGGCAATATCTATGGCGTGGCCAATCATAAAGGAAGCCATTGAAGACTTCTGCAATGAAAACATTCCAACCACTTTAACCATAGTAGATTTGGGTTGTTCTTCAGGACCAAACACTCTTATGATTGTCTCCAAATTAATCAAACAATTTCATAAAAACCTTCACAATAAACCACTCCAATTTCAAATCTTCTTCAATGATCTCCCTGCAAACGATTTCAATGCCATTTTTAGATCGTTGCCAAATTTCTTGGAAGATTTGAAGAACCAAATTGGAACTGATTTTGGAAACTGTTTCTTCAATGGAGTGCCGGGTTCTTTTTATGGAAGGCTCTTTCCCAACAGAAGTTTGCATTTTGTTCATTCTTCTTATACTCTCCATTGGCTCTCTCAGGTACCTGAAGGGATGGAGATAATAAACAAAGGCAACATATTCATAGACAGTACAAGTCCAGAGAATGTGGTTGAAGGCTTTTACAGTCAATTTCAAAAGGACTTTTCACTGTTTTTAAAGTGTCGTGGAGAAGAAATAGTAGGTGGTGGTCGAATGGTTCTTACCATATTAGGAAGAACAGATGAATATCCAACAAACAAAGATTTTTGTTACGCTCTTGCACTTCTCAATTTAGCTTTCAAGAACATGGTTGCAGAGGGGATTCTGAAAGAGGAGAAAGTTGATAGATTCAATATTCCAAATTTCATGCCAAGTCCAGAGGAAGTAAAAGCAGAGGTTTTAAAAGAAGGAAGTTTCATACTAAATGAACTTGGAGTCTCAAGAATTGATTGGAACTTCTACAATACTGAATTTGATGGATCAAATGTGTTAGTTGATAGCAGTTCCAATATTGCAAAATGCATTAGATCTGTTACTGAACCACTTTTGATTCCTCACTTTGGAGAAGCCATTGTTGAAGATTTATTTAAGAGGTATAAAAATATTGTCAAATATGAGATGTCCAGGAAAAGGATTGAGTTTACAAACCTCACTATTTCCCTTACTAAAATATAA 1086 35.73 MEVSKILHMNSGVGDKSYAKNSLLQQKAISMAWPIIKEAIEDFCNENIPTTLTIVDLGCSSGPNTLMIVSKLIKQFHKNLHNKPLQFQIFFNDLPANDFNAIFRSLPNFLEDLKNQIGTDFGNCFFNGVPGSFYGRLFPNRSLHFVHSSYTLHWLSQVPEGMEIINKGNIFIDSTSPENVVEGFYSQFQKDFSLFLKCRGEEIVGGGRMVLTILGRTDEYPTNKDFCYALALLNLAFKNMVAEGILKEEKVDRFNIPNFMPSPEEVKAEVLKEGSFILNELGVSRIDWNFYNTEFDGSNVLVDSSSNIAKCIRSVTEPLLIPHFGEAIVEDLFKRYKNIVKYEMSRKRIEFTNLTISLTKI 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32394027 32396418 - CcPI632755_04g017360.1 Cco04g1736 176961

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1736 361 Gene3D - 6 347 IPR042086 -
Cco04g1736 361 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 6 359 IPR005299 GO:0008168(InterPro)|GO:0008757(PANTHER)|GO:0032259(PANTHER)
Cco04g1736 361 Gene3D Vaccinia Virus protein VP39 21 287 IPR029063 -
Cco04g1736 361 Pfam SAM dependent carboxyl methyltransferase 39 360 IPR005299 GO:0008168(InterPro)
Cco04g1736 361 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1 360 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1736 K21483 - - csv:101209890 561.607
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1736 Cco-Chr4:32394027 Cco04g1738 Cco-Chr4:32424916 4.70E-113 dispersed
Cco04g1735 Cco-Chr4:32391140 Cco04g1736 Cco-Chr4:32394027 1.10E-39 tandem
Cco04g1736 Cco-Chr4:32394027 Cco04g1737 Cco-Chr4:32401128 1.30E-174 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1013 . . . . . . Bma09g00087 . . . . . . . . . . . . . . . . . Cla01g01929 Cam01g2014 Cec04g1672 Cco04g1736 Clacu01g2035 Cmu01g1910 Cre04g1587 . Cone12ag0775 . . . . . . Blo05g00805 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g03263 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000124 5 1 6 7 2 6 0 6 4 6 7 6 5 9 9 7 6 2 4 7 8 15 10 11 14 4 9 21 9 12 218