Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1747 ATGATCAATTTCAAGCAAATGGCCGTTCCCCAGTCCGTCTCCGCCGTATTCTCCGCCTACGCCTCCTTTGCCACCACCGTGATGCTCATCCGTTCTCTCACCAACCAACTCCTCCTTCCAAAATTCATTTCCTTCCTCTCTTCTATTTTTGTCTACTTCTTCGGCTCTGTTTCTTCTGACACCAAGTTTGTCATCGACGAGAGTTCTAGGGTCACTTCCAACGAGGTCCTCCAGGCCGTCGAGATTTATCTCCGTACCAGAATCACTCCTTCTATAGACATTCTCAAGTGGCGATTGGTCTGTTCCACAGATCAACACAAGGGTAACACACAGAAGCGCCACTTCCAGCTTTCTTTCCCTAGAAAATTCAGGGACAGAGTAGTCGATTTCTATTTGCCTTATGTGTTGACGAGAGCCAAGGAGTTTGAAGAGGACAACAAATCTGTGAAGATCTTTAGCCAGGAATGTTATGATGACTACACCAGCTACGGAGATTGGGGCTCTGTAAATTTGGACCATCCAGCGACGTTTGATACACTGGCCATGGACCATGAGTTGAAGCAATGGATAATCAACGATTTGGATAGGTTTGTTAGAAGGAAAAATTTGTATAAAAAGGTGGGGCAGGCTTGGAAGATGGGATATCTGTTGTATGGTCCTCCTGGTACGGGAAAATCAAGCTTAATTGCCGCCATTGCTAACTACCTTAAGTTTGATATTTTCGATTTGGATCTCTCCAACATTCACACCAATAGCAATCTCAGGAGGCTTCTTTTAGCCACCAAAAATCGATCGATCTTGGTGATTGAGGATATAGATTGCAGTGTAGAAATACAGAATCGCGAGAGTGGGGAACATTTTGATCGATCCAACAGCAAGTTTACCTTGTCGGGGATGCTTAATTTCATCGACAGCTTATGGTCAAGTATTGGAGACGAAAGAATCGTAATATTTACAACGAACCACAAGGAGCGATTGGATCCTGCTCTACCGCGGCCGGGTCGGATGGATGTCCACATAAACATGTCGTATTGTAGCTCTCAAGGGTTCAAAGTGTTGGCGTCGAATTACCTGGGCGGGGAAGTGAGTGAGCACCGTGTGTACAGAGAAATAGAAGAGTTGATCGGAGACATGGAAGTATCACCAGCAGAGATTGCGGAAGAGCTAATGAAGGGGGAGGATGTTGAGACCGTTCTTGGAGGTGTGGTGGGTTTTCTGAAACGTAAAAGGGAAGAACAGAGGAAGGAGAGAGGAGAAGAGTGA 1263 45.76 MINFKQMAVPQSVSAVFSAYASFATTVMLIRSLTNQLLLPKFISFLSSIFVYFFGSVSSDTKFVIDESSRVTSNEVLQAVEIYLRTRITPSIDILKWRLVCSTDQHKGNTQKRHFQLSFPRKFRDRVVDFYLPYVLTRAKEFEEDNKSVKIFSQECYDDYTSYGDWGSVNLDHPATFDTLAMDHELKQWIINDLDRFVRRKNLYKKVGQAWKMGYLLYGPPGTGKSSLIAAIANYLKFDIFDLDLSNIHTNSNLRRLLLATKNRSILVIEDIDCSVEIQNRESGEHFDRSNSKFTLSGMLNFIDSLWSSIGDERIVIFTTNHKERLDPALPRPGRMDVHINMSYCSSQGFKVLASNYLGGEVSEHRVYREIEELIGDMEVSPAEIAEELMKGEDVETVLGGVVGFLKRKREEQRKERGEE 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32486538 32487995 + CcPI632755_04g017470.1 Cco04g1747 176972

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1747 420 SMART AAA_5 211 346 IPR003593 GO:0016887(InterPro)
Cco04g1747 420 Pfam ATPase family associated with various cellular activities (AAA) 215 343 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco04g1747 420 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 391 IPR027417 -
Cco04g1747 420 PANTHER BCS1 AAA-TYPE ATPASE 105 410 IPR050747 -
Cco04g1747 420 ProSitePatterns AAA-protein family signature. 314 332 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco04g1747 420 Gene3D - 167 340 IPR027417 -
Cco04g1747 420 Pfam Domain associated at C-terminal with AAA 41 98 IPR025753 -
Cco04g1747 420 Gene3D - 341 412 - -
Cco04g1747 420 CDD RecA-like_BCS1 190 342 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1747 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1745 Cco-Chr4:32476333 Cco04g1747 Cco-Chr4:32486538 1.90E-202 dispersed
Cco04g1747 Cco-Chr4:32486538 Cco04g1750 Cco-Chr4:32496834 6.20E-133 dispersed
Cco04g1746 Cco-Chr4:32481257 Cco04g1747 Cco-Chr4:32486538 4.20E-202 tandem
Cco04g1747 Cco-Chr4:32486538 Cco04g1748 Cco-Chr4:32489896 9.70E-102 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1027 . . . Bda10g00144 . . . Bma15g00992 . . Cma03g00724 Cma07g00469 Car03g00663 . Sed14g1153 . Cpe10g00633 Bhi03g00924 Tan03g2018 Cmetu08g1706 . Hepe04g1547 . . Cla01g01938 Cam01g2025 Cec04g1683 Cco04g1747 Clacu01g2046 Cmu01g1922 Cre04g1599 Cone8ag0825 . Cone6ag1646 . Lsi01g00648 . Chy07g01254 Cme08g00882 . Blo06g00140 . . . . . . . Cmo03g00750 Cmo07g00466 . . . . . . . . . . . . . Cla07g00824 Cam07g0890 Cec07g0942 Cco07g0933 Clacu07g0864 Cmu07g0867 Cre07g1228 Lsi07g00245 Csa06g03274 Chy02g00617 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000531 0 2 1 2 1 4 1 7 5 4 3 5 2 3 7 3 5 0 1 5 5 2 3 6 7 7 5 5 5 5 111