Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1751 ATGGAGAAGCAGACAGAGGATCCATTTGCCGGGAAAGAGCAAAGAGACGTTAGGCAAACCCGAATACACGCCATCATGTCCGGACCGTTCTTTTCCATACCAGCTCTTGAAGGGTCTGATCTTGAGAATTCCGAGGATGAAAAGAATACATCCATTGGGTCCTTCAAGCAGAAGGCAGCCAGTGCCTCCTCCAAGTTCAGACATTCTATGACAAGAAGGGGCAGGAGAAGTAGTAAAGTCGCATCTGCGGAAATTGAAGATGTGCGTGACACAGAGGAGATGCAGGCCGTTGATGCCTTTCGCCAAGCGTTAATATTAGAGGAGTTGCTACCCGCGAAGCATGATGACTATCACATGATGCTCAGATTCATGAAGGCCAGGAAGTTTGATATTGAGAAAACAAAGCAAATGTGGTCGGACATGCTCCAATGGCGTAAAGACTTTGGCGCTGACACCATAATGGAGGATTTTGTATTTGAGGAGCTCGATCAAGTCTTAGATTATTATCCTCAAGGGCATCATGGTGTAGATAAGGAAGGACGGCCTGTATATATTGAGAAGTTGGGAAAGGTGGATCCCACAAAGTTAATGCAAGTCACTGATATTGACCGCTATCTAAAATACCATGTACGGGAGTTTGAGAGGACATTCTTAGTAAAATTTCCTGCCTGTTCAATAGCTTCCAAGAGGCACATTGATCAGAGTACAACAATCTTGGATGTCCAAGGAGTGGGACTTAAGAACTTCAATAAGACTGCTCGGGAACTCATTTCCCGCCTTCAGAAAATTGATGGCGAGAACTATCCAGAGACCTTGAATCGTATGTTCATCATTAATGCCGGTTCTGGATTTAGAATGCTGTGGAACACTGTAAAAACTTTTCTAGATCCTAAAACCACTGCAAAGATCCATGTTCTTGGAAATAAATACCAAAGCAAGTTGCTGGAAATTATCGATTCCAGTGAGTTGCCAGAGTTTCTCGGAGGCACCTGTACCTGCACTGATCAAGGAGGATGCATGCGCTCTGATAAAGGTCCATGGAAGGACCCAAATATATTAAAGATGGTCAACAATGGAAACCATAAATGTTCAAGGAATAATGGGGACGAGGGCCATCACTTACCTGATGTTAAGGATGTCTGCACCATCTCCCCCAAACATCCTTTTAATCACGTTGAGCATCGATCACTCTCTCCTCTCCATGAGGTTCCAATTACCAAGAATATTCAAGTGCCTTACAATGAGGATTGTGTCCCGGTGGTCGATAAAAGTGTGGATTTTGCATGGAAAACGGAGCCAGAAAAGAAAATGCTGGCCTCTTCCATTGCTATAGATTATGCTTTAGCTGGTTCAGGAGTGGCCTCTGGGGGTCTTAAATCTAAGGTTCTCGCTAGCATTGTGGCCTTCCTAATGGGAATTTCTGCTACGGTGAGACTGGCTCGCACCATGCCTAAGAAGCTCACTAATGCCTCCATTTACTCCAAACCAGTTTACTGTGTCGACAACTCCATGTTCAAGGGTCAGAGTCAGCCACCTTTATTACAACCCTTGCCTGATTACATGTCGACCGTAAAACGCATGGCTGAATTGGAAGAGAGGGTCAATAACTTGTGCACTAAACCTGCTGACATGCCTCGAGAGAAAGAGGACCTACTGAATGCTACAATCAGCCGCGTTGAAGTTCTCGAGCAGGAGCTTACACTATCCAAAAAGGTTTTGGAGGAAACAATGGCTAGGCAAGCAGATATCTTTGCTTATATTGAGAAAAGGAAGAAAAAGAGGAAACTGATATCATTCCGCTGGTTGAAGGGGTGA 1815 44.63 MEKQTEDPFAGKEQRDVRQTRIHAIMSGPFFSIPALEGSDLENSEDEKNTSIGSFKQKAASASSKFRHSMTRRGRRSSKVASAEIEDVRDTEEMQAVDAFRQALILEELLPAKHDDYHMMLRFMKARKFDIEKTKQMWSDMLQWRKDFGADTIMEDFVFEELDQVLDYYPQGHHGVDKEGRPVYIEKLGKVDPTKLMQVTDIDRYLKYHVREFERTFLVKFPACSIASKRHIDQSTTILDVQGVGLKNFNKTARELISRLQKIDGENYPETLNRMFIINAGSGFRMLWNTVKTFLDPKTTAKIHVLGNKYQSKLLEIIDSSELPEFLGGTCTCTDQGGCMRSDKGPWKDPNILKMVNNGNHKCSRNNGDEGHHLPDVKDVCTISPKHPFNHVEHRSLSPLHEVPITKNIQVPYNEDCVPVVDKSVDFAWKTEPEKKMLASSIAIDYALAGSGVASGGLKSKVLASIVAFLMGISATVRLARTMPKKLTNASIYSKPVYCVDNSMFKGQSQPPLLQPLPDYMSTVKRMAELEERVNNLCTKPADMPREKEDLLNATISRVEVLEQELTLSKKVLEETMARQADIFAYIEKRKKKRKLISFRWLKG 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32504875 32510737 + CcPI632755_04g017510.1 Cco04g1751 176976

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1751 604 Pfam CRAL/TRIO, N-terminal domain 113 139 IPR011074 -
Cco04g1751 604 FunFam SEC14 cytosolic factor 149 361 - -
Cco04g1751 604 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 161 335 IPR001251 -
Cco04g1751 604 Gene3D - 60 148 - -
Cco04g1751 604 Coils Coil 246 266 - -
Cco04g1751 604 CDD SEC14 164 330 IPR001251 -
Cco04g1751 604 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 39 591 IPR051026 -
Cco04g1751 604 SMART sec14_4 161 332 IPR001251 -
Cco04g1751 604 Pfam CRAL/TRIO domain 168 329 IPR001251 -
Cco04g1751 604 MobiDBLite consensus disorder prediction 53 67 - -
Cco04g1751 604 Gene3D - 149 361 IPR036865 -
Cco04g1751 604 SUPERFAMILY CRAL/TRIO domain 160 357 IPR036865 -
Cco04g1751 604 PRINTS Cellular retinaldehyde-binding protein signature 288 307 - -
Cco04g1751 604 PRINTS Cellular retinaldehyde-binding protein signature 321 330 - -
Cco04g1751 604 PRINTS Cellular retinaldehyde-binding protein signature 119 141 - -
Cco04g1751 604 MobiDBLite consensus disorder prediction 34 86 - -
Cco04g1751 604 SUPERFAMILY CRAL/TRIO N-terminal domain 90 157 IPR036273 -
Cco04g1751 604 SMART CRAL_TRIO_N_2 116 141 IPR011074 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1751 K26544 - - csv:101208423 1014.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1751 Cco-Chr4:32504875 Cco11g0431 Cco-Chr11:4521758 7.40E-196 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1029 . . . . . . . . . . Cma03g00721 Cma07g00466 Car03g00661 Car07g00413 . Cpe19g00824 Cpe10g00635 Bhi03g00922 . . . . . . Cla01g01939 Cam01g2027 Cec04g1687 Cco04g1751 Clacu01g2050 Cmu01g1926 Cre04g1600 . . . . Lsi01g00646 . . Cme08g00885 . . . . . . . . Sed01g0289 Cmo03g00748 Cmo07g00464 . Cma20g00834 . . . . Bhi10g01982 Tan05g1281 Cmetu11g0971 . Hepe08g1000 . . . . . . . . . . Csa06g03279 Chy02g00615 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009311 0 2 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 0 34