Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco04g1757 | ATGCTGCAGAAAATACCAAGCTTTTATGGCAATTTTCAAGTCAGAGCAGCTGTTGAAGATATATTTCATTTGGGATGGATGAGGACATGGGATTGTTTGGTTTCCTTCAAAACATATGGAGCATTCTTTATCAGAACTTTCCATATTTTTTGCCTCGACCTGGAATTGTATTGGTGGATGGATATTTCTTCGTACTTACCTTTGCCGGATATGTGGCAGTGGGAGAATGCCACGGCCGGTGCCCTCGCCGGATTTGCCACCGTCGCCGCCATGCATCCTCTAGATGTCGTCCGCACCCGGTTTCAAGTTTATGATGGCAGAGGATCAAATCTCCCGACTTACAAGAATACGGCTAATGCAATCTTCACTATTACTCGGATGGAGGGCTTGAGAGGGCTATATGCAGGCTTCTATCCTGCAGTTCTCGGGTCATCTGTTTCTTGGGGTTTATATTTCTTTTTCTATGGTAGAGCCAAAGAAAGATATTCTGACAATGGAAAGAAGGACCTGAGTCCTAGTCTTCATCTTGCTTCTGCAGCGGAAGCAGGAGCTTTGGTTTGTTTTTGCACGAATCCAGTTTGGCTTGTGAAAACAAGAATGCAGCTTCAGAGTCCTCTTCATCAAGCTCAACCTTATTCTGGGCTATATGATGCCTTCAGAACCATTTTGAGAGAGGAAGGTTTTGCTGCTCTTTATAAAGGGATTGTTCCTGGCCTTATGCTTCAGGTTTCTCATGGTGCCATTCAATTTACAGTTTATGAAGAACTCCGTAAAGTTATTGCCAACTCGAGGTCTAAAGGGACCAAAGTGGATGCTCAAAGTTCTGGGGAATTACTGAATTCGGGTGATTATGCTGTTCTTGGAGGATCTTCTAAAATTGCTGCCATGCTTCTGACATACCCATTTCAAGTTATTCGAGCTCGATTGCAGCAAAGACCAGGGAATGATGGGATCCCAAGATACATGGATAGCTTCCACGTTCTTAAGGAAACTGCACGGTTTGAGGGCATTCGTGGGTTTTACAGGGGAATTACACCAAACCTTCTAAAGAATGTCCCCGCGGCTTCAATCACATTTATTGTGTACGAAAACCTGATTTCTCAAAGTTGTCGGCGTTTACTTGGAGCTCGTCAGTTATCCATGGTATTGGTGGCAGAAGGAGCTGAGATGGATTCTTTGTGTTTACTAGCAGCCATTTGTTCAACACCATCACAAACAAGTCCAGAGGAGTTATTGTTTTGGGTTCTCTGGTGTTGGTTTTGGTTGAAGAAGAAGCATATTGGAAACAAAGATGGGATTCCTAAAGGGAATTTGGGTTGGCCTTTCTTTGGTGAAACTCTTCAATTCATTTCGTCTGGCTATTCTTCTTGTCCTGTCACCTTCATGGACAAACGCAAATCTCTGTATGGGAATGTGTTTAAAACCAACATTTTGGGGACACCCATTATAGTATCAACTGATTCAGAGGTGAATAAGGTTGTTTTACAAAACCATGGGAATATATTTATCCCAGCTTACCCAAAATCAATAACAGAATTACTTGGTACATTTTCAATTCTAAGAATGAATGGAAATGTTCAAAAAAGAGTTCATACAATAATTGGAGCCTTCCTAAGATCCCCTCAACTCAAAGCCCAAATCACACAAGATATTCAAAACACTGTTAAACTTCGACTTGCCAATTGGAATTCCTCTCAATTGGTTTATCTCCAAACTGAAACCAAACAGATCACATTTGAAGTATTGGTGAAGGTGTTGATGAGTGTGGGACCTGGCGAAGAATTGAAGATTTTGAAAAGGGAATTTGAAGAGTTTATCAAAGCTTTGATTTGTATACCCATTAAATTACCCGGAACTAGGCTATATAAATCTTTGAAGGCCAGAGAGAAGCTGTTGAAAATTGTGAGTAAGATTGTGGAAGATCGAAAGTCGAGGGTGGAGGAGAAGGTTGCACCGAGAGATGCGGTGGACGTGCTCTTACAGGATCACGATGAGATTCAAGGGCTACCGTTGGATTTCATCAGCAGTCACATCATAGAGTTGATGATTCCCGGCGAGGAGACGGTGCCGATGGCCATGACCCTCGCCGTCAAGTTTCTCAGTGATTGCCCCCGCGCTCTTGCCCAATTAATGGAAGAGAATATGAAACTGAAGAAGCAGAAGGATGGCTCTGGGGAGGAGTATACGTGGACAGATTACATGTCTCTGCTATTTACTCAAAATGTGATCAGTGAAACATTAAGAATGGCCAATATCATCAATGGGGTTTGGAGAAAAGCTCAAAAAGATGTGCAAATCAAAGGCTATTTAATACCACAAGGATGGTGTGTCTTGGCGTCTTTTATTTCAGTTCATATGGACGACAAGAACTACGCAAACCCACATCAGTTTGATCCATGGAGATGGGAGGAAAATTTGTCTGCAACAAACAACCATAACTTTACACCTTTTGGAGGGGGACAGAGGCTATGTCCTGGCATCGAACTCGCCAGGCTCGAAATCTCAATTTTCCTTCATCATCTCGTCACTACCTACAATGAGGATGAGAAGGAAGCTGCCTATCACAATCACAACGTTAAGCTCTTGATTGGATTCAATCGTCTCAACAACTTCAATACCGAGCTGTCGAGGAAATAA | 2637 | 42.55 | MLQKIPSFYGNFQVRAAVEDIFHLGWMRTWDCLVSFKTYGAFFIRTFHIFCLDLELYWWMDISSYLPLPDMWQWENATAGALAGFATVAAMHPLDVVRTRFQVYDGRGSNLPTYKNTANAIFTITRMEGLRGLYAGFYPAVLGSSVSWGLYFFFYGRAKERYSDNGKKDLSPSLHLASAAEAGALVCFCTNPVWLVKTRMQLQSPLHQAQPYSGLYDAFRTILREEGFAALYKGIVPGLMLQVSHGAIQFTVYEELRKVIANSRSKGTKVDAQSSGELLNSGDYAVLGGSSKIAAMLLTYPFQVIRARLQQRPGNDGIPRYMDSFHVLKETARFEGIRGFYRGITPNLLKNVPAASITFIVYENLISQSCRRLLGARQLSMVLVAEGAEMDSLCLLAAICSTPSQTSPEELLFWVLWCWFWLKKKHIGNKDGIPKGNLGWPFFGETLQFISSGYSSCPVTFMDKRKSLYGNVFKTNILGTPIIVSTDSEVNKVVLQNHGNIFIPAYPKSITELLGTFSILRMNGNVQKRVHTIIGAFLRSPQLKAQITQDIQNTVKLRLANWNSSQLVYLQTETKQITFEVLVKVLMSVGPGEELKILKREFEEFIKALICIPIKLPGTRLYKSLKAREKLLKIVSKIVEDRKSRVEEKVAPRDAVDVLLQDHDEIQGLPLDFISSHIIELMIPGEETVPMAMTLAVKFLSDCPRALAQLMEENMKLKKQKDGSGEEYTWTDYMSLLFTQNVISETLRMANIINGVWRKAQKDVQIKGYLIPQGWCVLASFISVHMDDKNYANPHQFDPWRWEENLSATNNHNFTPFGGGQRLCPGIELARLEISIFLHHLVTTYNEDEKEAAYHNHNVKLLIGFNRLNNFNTELSRK | 878 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 32550764 | 32566047 | + | CcPI632755_04g017570.1 | Cco04g1757 | 176982 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco04g1757 | 878 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 71 | 161 | IPR018108 | - | |
| Cco04g1757 | 878 | SUPERFAMILY | Mitochondrial carrier | 73 | 365 | IPR023395 | - | |
| Cco04g1757 | 878 | FunFam | folate transporter 1, chloroplastic isoform X1 | 63 | 166 | - | - | |
| Cco04g1757 | 878 | SUPERFAMILY | Cytochrome P450 | 433 | 846 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1757 | 878 | CDD | CYP90-like | 465 | 850 | - | - | |
| Cco04g1757 | 878 | Gene3D | Cytochrome P450 | 423 | 861 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1757 | 878 | PANTHER | MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED | 73 | 366 | IPR044712 | GO:0006862(InterPro)|GO:0008517(PANTHER)|GO:0009941(PANTHER)|GO:0015230(PANTHER)|GO:0022857(PANTHER)|GO:0055085(InterPro)|GO:0055085(PANTHER)|GO:1904947(PANTHER) | |
| Cco04g1757 | 878 | PRINTS | E-class P450 group I signature | 780 | 804 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1757 | 878 | PRINTS | E-class P450 group I signature | 814 | 824 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1757 | 878 | PRINTS | E-class P450 group I signature | 673 | 690 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1757 | 878 | PRINTS | E-class P450 group I signature | 824 | 847 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1757 | 878 | PRINTS | E-class P450 group I signature | 466 | 485 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1757 | 878 | Coils | Coil | 707 | 727 | - | - | |
| Cco04g1757 | 878 | FunFam | Folate transporter 1, chloroplastic | 167 | 372 | - | - | |
| Cco04g1757 | 878 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 282 | 368 | IPR018108 | - | |
| Cco04g1757 | 878 | FunFam | 3-epi-6-deoxocathasterone 23-monooxygenase CYP90D1 | 423 | 862 | - | - | |
| Cco04g1757 | 878 | Pfam | Cytochrome P450 | 434 | 846 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1757 | 878 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 817 | 826 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cco04g1757 | 878 | Gene3D | Mitochondrial carrier domain | 158 | 373 | IPR023395 | - | |
| Cco04g1757 | 878 | PRINTS | P450 superfamily signature | 741 | 752 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1757 | 878 | PRINTS | P450 superfamily signature | 824 | 835 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1757 | 878 | PRINTS | P450 superfamily signature | 539 | 552 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1757 | 878 | PRINTS | P450 superfamily signature | 815 | 824 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1757 | 878 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 170 | 259 | IPR018108 | - | |
| Cco04g1757 | 878 | Pfam | Mitochondrial carrier protein | 170 | 262 | IPR018108 | - | |
| Cco04g1757 | 878 | Pfam | Mitochondrial carrier protein | 282 | 365 | IPR018108 | - | |
| Cco04g1757 | 878 | Pfam | Mitochondrial carrier protein | 74 | 164 | IPR018108 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco04g1757 | Cco-Chr4:32550764 | Cco07g1443 | Cco-Chr7:28529488 | 7.10E-131 | dispersed | |
| Cco04g1757 | Cco-Chr4:32550764 | Cco09g0055 | Cco-Chr9:478274 | 3.90E-137 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco04g1757 | K12637 | - | csv:101203911 | 789.26 |