Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1761 ATGGCAGCAGCAGCAGCAGAGGGACGAGTCATCCGCTGTACCACCATTGATTCTTGGAACCACCAAATTCAGAAAGGCAATGCCTCTCAAGAACTGATAGTTGTGGATTTCACTGCATCATGGTGTGGTCCATGTCGGTTCATTGCACCTTTCCTAGACGAGCTTGCTCAAAAATTTCCCAGTGTCACATTTCTCAAGGTTGATGTGGATGATCTTGAGACGGTAGCTAAAGATTGGGGAGTGGAGGCAATGCCTACTTTTATGTTCTTGAAAGAAGGAAGAATTGTGGATAAGGTGGTTGGAGCTAAAAAGGAAGAACTGCACCAGACTGTATTCAAGCACATGGCTGCCACTGCTTCTGCCTGA 366 46.45 MAAAAAEGRVIRCTTIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKFPSVTFLKVDVDDLETVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELHQTVFKHMAATASA 121
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32586825 32587917 - CcPI632755_04g017610.1 Cco04g1761 176986

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1761 121 ProSitePatterns Thioredoxin family active site. 34 52 IPR017937 -
Cco04g1761 121 CDD TRX_family 28 111 - -
Cco04g1761 121 Gene3D Glutaredoxin 1 120 - -
Cco04g1761 121 SUPERFAMILY Thioredoxin-like 7 116 IPR036249 -
Cco04g1761 121 FunFam Thioredoxin 9 116 - -
Cco04g1761 121 PRINTS Thioredoxin family signature 33 41 - -
Cco04g1761 121 PRINTS Thioredoxin family signature 41 50 - -
Cco04g1761 121 PRINTS Thioredoxin family signature 80 91 - -
Cco04g1761 121 ProSiteProfiles Thioredoxin domain profile. 1 117 IPR013766 -
Cco04g1761 121 Pfam Thioredoxin 13 111 IPR013766 -
Cco04g1761 121 PANTHER THIOREDOXIN 7 114 IPR050620 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1761 K03671 - - csv:101203181 204.912
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0511 Cco-Chr3:5260093 Cco04g1761 Cco-Chr4:32586825 8.60E-21 dispersed
Cco04g0806 Cco-Chr4:23388808 Cco04g1761 Cco-Chr4:32586825 6.40E-26 dispersed
Cco04g1761 Cco-Chr4:32586825 Cco07g0373 Cco-Chr7:4066994 1.80E-29 dispersed
Cco02g0652 Cco-Chr2:6518282 Cco04g1761 Cco-Chr4:32586825 1.10E-11 transposed
Cco04g1761 Cco-Chr4:32586825 Cco05g2107 Cco-Chr5:30054712 5.00E-35 wgd
Cco04g1761 Cco-Chr4:32586825 Cco08g1653 Cco-Chr8:28009245 6.10E-25 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1058 . . . . . . . . . . Cma03g00711 Cma07g00455 Car03g00652 Car07g00403 Sed14g1166 Cpe19g00834 Cpe10g00643 Bhi03g00902 Tan03g2039 Cmetu08g0881 . Hepe04g1561 . . Cla01g01949 Cam01g2038 Cec04g1696 Cco04g1761 Clacu01g2060 Cmu01g1937 Cre04g1611 . . Cone6ag1656 Cone9ag1580 Lsi01g00634 . . Cme08g00895 . . . . . Bpe06g00034 . . . Cmo03g00737 Cmo07g00452 . . . . . . . . . . . . . . . . . . . . . Csa06g03291 Chy02g00605 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009315 0 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 34