Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g1764 | ATGTCTGGCTTTTTCACTTTAGGAGGCGGCGGAGGAGGAGGAGGAGGAAGAGGAAGAGAAGAGCACCAAGAAAACCAACAAAACAACCGCCCCAACGAAATTGTTCCCCCGGATAGCAGCTTGTTTTGGTATAAGGGCAACGTGGAGGTATGGCAGCAGCAGCAGCAGCATCATCATCATCATCATCATCATCATCATCAAGAACAAGCTCTCTTCCAAACCCAATCCCGGACTACTCCTTACTCCGCTCCTCTAGGCGTCCGGAGCTCCGATGAATCCTCCTCCAGATCGGGTAATTTCATGATGATAAGCTCAGGATCCGGTGGAGGTGGAATCAGCTGCCAAGACTGCGGCAACCAAGCGAAGAAAGATTGCAGCCATATGCGGTGCAGAACTTGTTGCAAGAGCCGAGGATTCCATTGTGAAACCCATGTGAAAAGCACTTGGGTCCCTGCCGCCAAGCGTCGCGAGCGCCAAGACAAACTCGCTGCCTTACAAAGCCATCATCAACATCAACTTCATCTCCATGGCGACAATAATCCCAAACGCCACAGAGATTATAACCCCACTTCTTCCTCTTCTCTTGCCTGCACTCTCATCCCCACCAACAACAATACTTCTGGGTTGGAAATTGGGAATTTCCCAGCCGAGTTAAACTCTCCGGCTGTTTTCCGTTGCGTTCGCGTCAGCTCTACCGACGATACTGACGACCAATACGCGTATCAAACGGCGGTAAATATCGGAGGACATGTTTTCAAAGGAATTCTATACGATCAAGGACCGGAAAATAATTATATTCCACCGGCTGAGACTTCATCCGGTGGTGGTGGGAGTAGTAGTGGAGTGCAACCACTGAATTTCATCGCTGGTGCCGCTGATGCCACCGCAAGCGGTGGTTCCACCGCCGCATTACCCTTGATGGATCCTTCTTCTTTGTATTCAACGCCACTCAATAGCTTCATGGCGGGTACGCAATTCTTCCTACCACCAAGATCTTAA | 999 | 50.25 | MSGFFTLGGGGGGGGGRGREEHQENQQNNRPNEIVPPDSSLFWYKGNVEVWQQQQQHHHHHHHHHHQEQALFQTQSRTTPYSAPLGVRSSDESSSRSGNFMMISSGSGGGGISCQDCGNQAKKDCSHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQDKLAALQSHHQHQLHLHGDNNPKRHRDYNPTSSSSLACTLIPTNNNTSGLEIGNFPAELNSPAVFRCVRVSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYIPPAETSSGGGGSSSGVQPLNFIAGAADATASGGSTAALPLMDPSSLYSTPLNSFMAGTQFFLPPRS | 332 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 32614116 | 32615336 | - | CcPI632755_04g017640.1 | Cco04g1764 | 176989 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g1764 | 332 | Pfam | Domain of unknown function (DUF702) | 111 | 262 | - | - | |
Cco04g1764 | 332 | NCBIfam | LRP1 C-terminal domain | 214 | 261 | IPR006511 | - | |
Cco04g1764 | 332 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 1 | 326 | IPR007818 | GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER) | |
Cco04g1764 | 332 | MobiDBLite | consensus disorder prediction | 170 | 191 | - | - | |
Cco04g1764 | 332 | NCBIfam | putative zinc finger domain, LRP1 type | 113 | 155 | IPR006510 | - | |
Cco04g1764 | 332 | MobiDBLite | consensus disorder prediction | 53 | 73 | - | - | |
Cco04g1764 | 332 | MobiDBLite | consensus disorder prediction | 170 | 185 | - | - | |
Cco04g1764 | 332 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g2444 | Cco-Chr2:36795588 | Cco04g1764 | Cco-Chr4:32614116 | 1.50E-34 | dispersed | |
Cco04g1764 | Cco-Chr4:32614116 | Cco09g1462 | Cco-Chr9:19842313 | 1.80E-50 | dispersed | |
Cco04g1764 | Cco-Chr4:32614116 | Cco05g2102 | Cco-Chr5:29998011 | 4.30E-52 | wgd | |
Cco04g1764 | Cco-Chr4:32614116 | Cco07g0951 | Cco-Chr7:21776844 | 8.60E-53 | wgd | |
Cco04g1764 | Cco-Chr4:32614116 | Cco08g1643 | Cco-Chr8:27910397 | 2.60E-57 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59114 | PF05142 | DUF702 | 1.10E-66 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g1764 | K27807 | - | csv:101207689 | 496.508 |