Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1764 ATGTCTGGCTTTTTCACTTTAGGAGGCGGCGGAGGAGGAGGAGGAGGAAGAGGAAGAGAAGAGCACCAAGAAAACCAACAAAACAACCGCCCCAACGAAATTGTTCCCCCGGATAGCAGCTTGTTTTGGTATAAGGGCAACGTGGAGGTATGGCAGCAGCAGCAGCAGCATCATCATCATCATCATCATCATCATCATCAAGAACAAGCTCTCTTCCAAACCCAATCCCGGACTACTCCTTACTCCGCTCCTCTAGGCGTCCGGAGCTCCGATGAATCCTCCTCCAGATCGGGTAATTTCATGATGATAAGCTCAGGATCCGGTGGAGGTGGAATCAGCTGCCAAGACTGCGGCAACCAAGCGAAGAAAGATTGCAGCCATATGCGGTGCAGAACTTGTTGCAAGAGCCGAGGATTCCATTGTGAAACCCATGTGAAAAGCACTTGGGTCCCTGCCGCCAAGCGTCGCGAGCGCCAAGACAAACTCGCTGCCTTACAAAGCCATCATCAACATCAACTTCATCTCCATGGCGACAATAATCCCAAACGCCACAGAGATTATAACCCCACTTCTTCCTCTTCTCTTGCCTGCACTCTCATCCCCACCAACAACAATACTTCTGGGTTGGAAATTGGGAATTTCCCAGCCGAGTTAAACTCTCCGGCTGTTTTCCGTTGCGTTCGCGTCAGCTCTACCGACGATACTGACGACCAATACGCGTATCAAACGGCGGTAAATATCGGAGGACATGTTTTCAAAGGAATTCTATACGATCAAGGACCGGAAAATAATTATATTCCACCGGCTGAGACTTCATCCGGTGGTGGTGGGAGTAGTAGTGGAGTGCAACCACTGAATTTCATCGCTGGTGCCGCTGATGCCACCGCAAGCGGTGGTTCCACCGCCGCATTACCCTTGATGGATCCTTCTTCTTTGTATTCAACGCCACTCAATAGCTTCATGGCGGGTACGCAATTCTTCCTACCACCAAGATCTTAA 999 50.25 MSGFFTLGGGGGGGGGRGREEHQENQQNNRPNEIVPPDSSLFWYKGNVEVWQQQQQHHHHHHHHHHQEQALFQTQSRTTPYSAPLGVRSSDESSSRSGNFMMISSGSGGGGISCQDCGNQAKKDCSHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQDKLAALQSHHQHQLHLHGDNNPKRHRDYNPTSSSSLACTLIPTNNNTSGLEIGNFPAELNSPAVFRCVRVSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYIPPAETSSGGGGSSSGVQPLNFIAGAADATASGGSTAALPLMDPSSLYSTPLNSFMAGTQFFLPPRS 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32614116 32615336 - CcPI632755_04g017640.1 Cco04g1764 176989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1764 332 Pfam Domain of unknown function (DUF702) 111 262 - -
Cco04g1764 332 NCBIfam LRP1 C-terminal domain 214 261 IPR006511 -
Cco04g1764 332 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 326 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
Cco04g1764 332 MobiDBLite consensus disorder prediction 170 191 - -
Cco04g1764 332 NCBIfam putative zinc finger domain, LRP1 type 113 155 IPR006510 -
Cco04g1764 332 MobiDBLite consensus disorder prediction 53 73 - -
Cco04g1764 332 MobiDBLite consensus disorder prediction 170 185 - -
Cco04g1764 332 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2444 Cco-Chr2:36795588 Cco04g1764 Cco-Chr4:32614116 1.50E-34 dispersed
Cco04g1764 Cco-Chr4:32614116 Cco09g1462 Cco-Chr9:19842313 1.80E-50 dispersed
Cco04g1764 Cco-Chr4:32614116 Cco05g2102 Cco-Chr5:29998011 4.30E-52 wgd
Cco04g1764 Cco-Chr4:32614116 Cco07g0951 Cco-Chr7:21776844 8.60E-53 wgd
Cco04g1764 Cco-Chr4:32614116 Cco08g1643 Cco-Chr8:27910397 2.60E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59114 PF05142 DUF702 1.10E-66 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1764 K27807 - csv:101207689 496.508