Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1769 ATGGAAGCTGCGTTGAAGATGGGTCTCATGAAGGAGATGACTTTCAAATCTAGCCCCAAACTTCATTTCGACGAATTTTGGTCCTCCAATCCGCCAAACGCTGCATCACCCTCTTCCGATTACATTTTTGTAGACCAGCTTCTCAACTTTTCGAACGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGCAGAGGGTGAAGAAAAAAACAACCACTCCTCTGTTTCTGCTCCTCTGCAACTTCAACAACACCACGACAGCGACCAGATTTCCAACCACAGCTCCACCAATTCCTCCGAAGATGACTTTTGGTCTATTTCTTCAAGAGATTTTGAAGACCTTGAATGGCTCTCCCATCTCGTCGCCGACTCCACCCAAGAAGAATACTCTGCCGCACACCCGCCCTGCTCTGTTTTTTTGACACAGAAGCCCATTAATTACCAGAAGGAAACAACCCACCACCGGAAAGCCCAGAATTTCGAATTTAATCTCAATACCCCATTTCCTTCAAAGCCCAGAAGCAAGCGAGCGAAAATCTCCGGCCGAGTCTGGTCCTTAACGAATTCAATTCCTTCCCCATCATTATATTCGCCGCCGGCGAAGAAACCAAAGAAGAATCCGGCTGAGGAGAGCTCCAGCAGGGTCCAGGCGCCGCGGCGGTGCAGTCATTGCGGCGTTCAAAAAACCCCCCAATGGCGAGCCGGTCCACTTGGAGCAAAGAGTCTATGTAATGCGTGCGGTGTCCGGTTCAAATCCGGGCGGCTTTTTCCCGAATACAGACCGGCTTGTAGCCCGACGTTTTCGTGCGAGCTTCACTCGAACCACCACCGGAAAGTACTGGAGATGCGACGTAAAAAGGAAACGGAGAAACCCCACTCCGGTCTGGACCCGGCCCTGTAG 897 50.5 MEAALKMGLMKEMTFKSSPKLHFDEFWSSNPPNAASPSSDYIFVDQLLNFSNEEEEEEEEEEAEGEEKNNHSSVSAPLQLQQHHDSDQISNHSSTNSSEDDFWSISSRDFEDLEWLSHLVADSTQEEYSAAHPPCSVFLTQKPINYQKETTHHRKAQNFEFNLNTPFPSKPRSKRAKISGRVWSLTNSIPSPSLYSPPAKKPKKNPAEESSSRVQAPRRCSHCGVQKTPQWRAGPLGAKSLCNACGVRFKSGRLFPEYRPACSPTFSCELHSNHHRKVLEMRRKKETEKPHSGLDPAL 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32647129 32648025 + CcPI632755_04g017690.1 Cco04g1769 176994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1769 298 PIRSF Txn_fac_GATA_plant 10 295 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Cco04g1769 298 FunFam GATA transcription factor 209 293 - -
Cco04g1769 298 MobiDBLite consensus disorder prediction 70 101 - -
Cco04g1769 298 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 213 276 - -
Cco04g1769 298 MobiDBLite consensus disorder prediction 47 101 - -
Cco04g1769 298 ProSitePatterns GATA-type zinc finger domain. 220 245 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco04g1769 298 CDD ZnF_GATA 219 268 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco04g1769 298 ProSiteProfiles GATA-type zinc finger domain profile. 214 250 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco04g1769 298 MobiDBLite consensus disorder prediction 150 181 - -
Cco04g1769 298 MobiDBLite consensus disorder prediction 193 221 - -
Cco04g1769 298 MobiDBLite consensus disorder prediction 50 65 - -
Cco04g1769 298 PANTHER GATA TRANSCRIPTION FACTOR 43 286 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Cco04g1769 298 SMART GATA_3 214 264 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco04g1769 298 Coils Coil 44 71 - -
Cco04g1769 298 Gene3D - 211 291 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cco04g1769 298 Pfam GATA zinc finger 220 253 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1769 Cco-Chr4:32647129 Cco11g0404 Cco-Chr11:4171039 2.80E-34 dispersed
Cco04g1769 Cco-Chr4:32647129 Cco07g0961 Cco-Chr7:22170119 1.60E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59115 PF00320 GATA 1.20E-16 CL0167 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1769 - - - 0.0