Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco04g1773 | ATGGATTCTCAATCTCTTCTTCAACCTCTCAATATGGCATTCTTTTTCACAGTCACTCTTCTGTTTCTGCTGGGACGGCTGTTCCGACGTTTCCGGCGAAAGCTGCCGTTTCCACCCGGCCCAAAAGGCCTCCCCTTCATCGGCAATATGCTGATGATGGACCAGCTCACCCACCGTGGACTCGCCAATCTCGCCACCCGCTACGGCGGAATTTTCCATATGCGCATGGGCTTCCTTCATACAGTCACTGTCTCCAACCCCGACATCGCCCGCCAAGTTCTTCAGGTCCACGATGGTATTTGTTCTAATCGTCCGGCCACCATTGCCATAACATACTTAACGTACAACCGCGCCGACATGGCTTTCGCTCACTATGGCCCATTCTGGCGGCAGATGCGTAAGCTCTGCGTCATGAAATTATTCAGTCGAAAGCGAGCTGAGTCATGGCAGTCTGTTCGTGATGAGGTGGACACCACCATTAGAAAGGTCGCCGTTCAGACGGGAACCACCGTGAACATCGGGGAGCTAGTGTTTGAACTAACGAGAGATATTATTTATAGAGCCGCATTTGGGTCAAGCGCAATGCAAGGTCAGGACGAGTTTATAAGTATCTTACAAGAATTCTCTAAACTTTTTGGAGCTTTCAATATTGCCGATTTTATTCCGAGTCTGGGTTGGATTGACCCTCAAGGCTTAAACAACAGACTCGTTAAGGCTCGTCAATCACTCGATAAATTCATTGACTCTATAATCGACGATCACATAAGTAAAAAAAGGAAGGAAGCAAAGTTACCAAATTATAACCATGAAATTGACAGCGATATGGTGGATGAATTGCTAGCTTTTTACAATGAAGACTCAACCATAATAAATGCATCGGATGATCTACAAAACAACATCAAACTCAGTCGTGACAACATCAAAGCCATCATCATGGATGTTATGTTTGGTGGGACGGAGACGGTAGCGTCGGCGATAGAGTGGGCCATGTCGGAGCTAATGAGAAGCCCAGAAGATTTAAAGAAAGCCCAACAAGAACTCGACCAAGTCGTCGGTCTCGAACGACGTGTCGAAGAAACCGACTTCGAAAATTTGACCTTTTTGAGATGCTGCCTCAAGGAGACTCTTCGGCTGCACCCACCAATCCCGCTCCTCCTCCACGAGACGGCGGAGGACGCGGTGGTCGCCGGCTACTTCATTCCGGCGAAATCTCGAGTCATGGTGAACGCGTGGGCCATTGGGAGGGATCCGGCGTCGTGGGACGACCCCGAAACATTCCGGCCGGCGAGGTTTCTAGAACAGGGGGTCCCGGATTTTAAAGGGAACAACTTCGAGTTCATTCCGTTCGGGTCTGGTCGGCGGTCTTGCCCCGGAATGCAACTGGGTTTGTATGGGCTTGAAATGGCGGTGGCTCACTTGTTGCACTGTTTCAATTGGGAATTGCCCGACGGGATGAGGCCGAGCGAAATGGACATGAGCGATATTTTCGGACTGACCGCTCCGAGAGCGAACCGGCTTGTGGCTGTGCCCACGAAACGGGTTCTATGTCCACTCCTGTGA | 1560 | 50.26 | MDSQSLLQPLNMAFFFTVTLLFLLGRLFRRFRRKLPFPPGPKGLPFIGNMLMMDQLTHRGLANLATRYGGIFHMRMGFLHTVTVSNPDIARQVLQVHDGICSNRPATIAITYLTYNRADMAFAHYGPFWRQMRKLCVMKLFSRKRAESWQSVRDEVDTTIRKVAVQTGTTVNIGELVFELTRDIIYRAAFGSSAMQGQDEFISILQEFSKLFGAFNIADFIPSLGWIDPQGLNNRLVKARQSLDKFIDSIIDDHISKKRKEAKLPNYNHEIDSDMVDELLAFYNEDSTIINASDDLQNNIKLSRDNIKAIIMDVMFGGTETVASAIEWAMSELMRSPEDLKKAQQELDQVVGLERRVEETDFENLTFLRCCLKETLRLHPPIPLLLHETAEDAVVAGYFIPAKSRVMVNAWAIGRDPASWDDPETFRPARFLEQGVPDFKGNNFEFIPFGSGRRSCPGMQLGLYGLEMAVAHLLHCFNWELPDGMRPSEMDMSDIFGLTAPRANRLVAVPTKRVLCPLL | 519 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 32677857 | 32681377 | + | CcPI632755_04g017730.1 | Cco04g1773 | 176998 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco04g1773 | 519 | PRINTS | E-class P450 group I signature | 456 | 479 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1773 | 519 | PRINTS | E-class P450 group I signature | 369 | 387 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1773 | 519 | PRINTS | E-class P450 group I signature | 65 | 84 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1773 | 519 | PRINTS | E-class P450 group I signature | 409 | 433 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1773 | 519 | PRINTS | E-class P450 group I signature | 446 | 456 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1773 | 519 | PRINTS | E-class P450 group I signature | 306 | 323 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1773 | 519 | PRINTS | E-class P450 group I signature | 326 | 352 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1773 | 519 | SUPERFAMILY | Cytochrome P450 | 28 | 513 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1773 | 519 | Coils | Coil | 340 | 360 | - | - | |
| Cco04g1773 | 519 | PRINTS | P450 superfamily signature | 370 | 381 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1773 | 519 | PRINTS | P450 superfamily signature | 317 | 334 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1773 | 519 | PRINTS | P450 superfamily signature | 447 | 456 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1773 | 519 | PANTHER | CYTOCHROME P450 84A1-RELATED | 12 | 518 | IPR053062 | GO:0004497(PANTHER) | |
| Cco04g1773 | 519 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 449 | 458 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cco04g1773 | 519 | Pfam | Cytochrome P450 | 38 | 501 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g1773 | 519 | CDD | CYP71-like | 67 | 506 | - | - | |
| Cco04g1773 | 519 | FunFam | Cytochrome P450 84A1 | 30 | 512 | - | - | |
| Cco04g1773 | 519 | Gene3D | Cytochrome P450 | 24 | 513 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco02g0505 | Cco-Chr2:4692184 | Cco04g1773 | Cco-Chr4:32677857 | 6.40E-88 | dispersed | |
| Cco04g1773 | Cco-Chr4:32677857 | Cco07g0958 | Cco-Chr7:22075655 | 4.60E-154 | dispersed | |
| Cco04g1773 | Cco-Chr4:32677857 | Cco06g1946 | Cco-Chr6:29687952 | 7.50E-96 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco04g1773 | K09755 | - | csv:101205783 | 867.07 |