Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1775 ATGAGGATACTTTGTGATTCTTGTGAAAGTGCTGCAGCAACTTTGTTTTGTGCTGCAGATGAGGCTGCTCTTTGTGCAATTTGTGATACGAAGGTACACATGTGCAATAAGCTTGCGAGCCGTCATGTAAGGGTTGGGCTAGCAAATCCAAGTGAAGTTCCTCGATGTGATATATGTGAAAATGCACCAGCTTTCTTTTACTGTGAGATAGATGGTAGTTCCTTGTGTTTACAATGCGACGTGATTGTTCATGTGGGAGGTAAAAGAATGCACAAGAGATATCTTCGGCTGAGGCAGACAGTTGAGTTTCCAGGGGATAAATTACAAAATGATGTGAAGGACCTAAATGCAAAACCAATGGAACAGGTTGAGAAAGTGAGAAGCCAAAATGAAGAAAGGGGTGAGATTGAGAAGCACGAAGAGTTGAGGGTTTCAGTTATTAAAAAAGATTATTCAAATGGAGATGGGCATTCCAAGCGACCTAATAAAGTGATTGACTTGAACATGTAA 510 40.78 MRILCDSCESAAATLFCAADEAALCAICDTKVHMCNKLASRHVRVGLANPSEVPRCDICENAPAFFYCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQTVEFPGDKLQNDVKDLNAKPMEQVEKVRSQNEERGEIEKHEELRVSVIKKDYSNGDGHSKRPNKVIDLNM 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32691770 32692814 - CcPI632755_04g017750.1 Cco04g1775 177000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1775 169 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Cco04g1775 169 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Cco04g1775 169 SMART bboxneu5 51 96 IPR000315 GO:0008270(InterPro)
Cco04g1775 169 Gene3D Classic Zinc Finger 1 95 - -
Cco04g1775 169 MobiDBLite consensus disorder prediction 148 162 - -
Cco04g1775 169 MobiDBLite consensus disorder prediction 148 169 - -
Cco04g1775 169 ProSiteProfiles Zinc finger B-box type profile. 51 97 IPR000315 GO:0008270(InterPro)
Cco04g1775 169 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270(InterPro)
Cco04g1775 169 Pfam B-box zinc finger 52 85 IPR000315 GO:0008270(InterPro)
Cco04g1775 169 FunFam B-box zinc finger protein 19 2 92 - -
Cco04g1775 169 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 132 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Cco04g1775 169 CDD Bbox1_BBX-like 4 47 IPR049808 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1775 Cco-Chr4:32691770 Cco07g1085 Cco-Chr7:24391664 6.40E-20 dispersed
Cco07g0890 Cco-Chr7:20775766 Cco04g1775 Cco-Chr4:32691770 6.70E-55 transposed
Cco04g1775 Cco-Chr4:32691770 Cco08g1639 Cco-Chr8:27887923 4.60E-18 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59117 PF00643 zf-B_box 2.80E-06 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1775 - - - 0.0