Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g1775 | ATGAGGATACTTTGTGATTCTTGTGAAAGTGCTGCAGCAACTTTGTTTTGTGCTGCAGATGAGGCTGCTCTTTGTGCAATTTGTGATACGAAGGTACACATGTGCAATAAGCTTGCGAGCCGTCATGTAAGGGTTGGGCTAGCAAATCCAAGTGAAGTTCCTCGATGTGATATATGTGAAAATGCACCAGCTTTCTTTTACTGTGAGATAGATGGTAGTTCCTTGTGTTTACAATGCGACGTGATTGTTCATGTGGGAGGTAAAAGAATGCACAAGAGATATCTTCGGCTGAGGCAGACAGTTGAGTTTCCAGGGGATAAATTACAAAATGATGTGAAGGACCTAAATGCAAAACCAATGGAACAGGTTGAGAAAGTGAGAAGCCAAAATGAAGAAAGGGGTGAGATTGAGAAGCACGAAGAGTTGAGGGTTTCAGTTATTAAAAAAGATTATTCAAATGGAGATGGGCATTCCAAGCGACCTAATAAAGTGATTGACTTGAACATGTAA | 510 | 40.78 | MRILCDSCESAAATLFCAADEAALCAICDTKVHMCNKLASRHVRVGLANPSEVPRCDICENAPAFFYCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQTVEFPGDKLQNDVKDLNAKPMEQVEKVRSQNEERGEIEKHEELRVSVIKKDYSNGDGHSKRPNKVIDLNM | 169 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 32691770 | 32692814 | - | CcPI632755_04g017750.1 | Cco04g1775 | 177000 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g1775 | 169 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270(InterPro) | |
Cco04g1775 | 169 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270(InterPro) | |
Cco04g1775 | 169 | SMART | bboxneu5 | 51 | 96 | IPR000315 | GO:0008270(InterPro) | |
Cco04g1775 | 169 | Gene3D | Classic Zinc Finger | 1 | 95 | - | - | |
Cco04g1775 | 169 | MobiDBLite | consensus disorder prediction | 148 | 162 | - | - | |
Cco04g1775 | 169 | MobiDBLite | consensus disorder prediction | 148 | 169 | - | - | |
Cco04g1775 | 169 | ProSiteProfiles | Zinc finger B-box type profile. | 51 | 97 | IPR000315 | GO:0008270(InterPro) | |
Cco04g1775 | 169 | Pfam | B-box zinc finger | 4 | 42 | IPR000315 | GO:0008270(InterPro) | |
Cco04g1775 | 169 | Pfam | B-box zinc finger | 52 | 85 | IPR000315 | GO:0008270(InterPro) | |
Cco04g1775 | 169 | FunFam | B-box zinc finger protein 19 | 2 | 92 | - | - | |
Cco04g1775 | 169 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 132 | IPR051979 | GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER) | |
Cco04g1775 | 169 | CDD | Bbox1_BBX-like | 4 | 47 | IPR049808 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g1775 | Cco-Chr4:32691770 | Cco07g1085 | Cco-Chr7:24391664 | 6.40E-20 | dispersed | |
Cco07g0890 | Cco-Chr7:20775766 | Cco04g1775 | Cco-Chr4:32691770 | 6.70E-55 | transposed | |
Cco04g1775 | Cco-Chr4:32691770 | Cco08g1639 | Cco-Chr8:27887923 | 4.60E-18 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59117 | PF00643 | zf-B_box | 2.80E-06 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g1775 | - | - | - | 0.0 |