Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1777 ATGAAGCCTCTTCTGTTGTTTTTTGCTCTGCTCTGCGGCGGTTTCTTTTCCTCCTCCGCCGACACCAGCGCCCAAACCCTACTGGAGATTCAGGCATTGATGTCCTTTAAACTTAATCTTCATGATCCTCTTGGTGCATTGACTGCTTGGGATTCTTCCACCCCATTGGCGCCATGTGACTGGCGGGGTGTTCTTTGTGCTAATAATCGAGTTACTGAGCTCCGTTTGCCTCGCCTTCAACTCTCCGGCCGATTGACCGATCAGTTGGCTAATTTGCGGATGCTGCGGAAGTTCAGTATCCGCTCTAATTTCTTCAATGGTACGATTCCCTCTTCTTTGTCCAAATGTGCGTTGCTGCGTTCTGTTTTCTTGCAGTACAATTTGTTTTCTGGTGGCCTTCCGGCGGAGTTTGGCAACTTGACTAATCTACATGTACTAAACGTGGCGGAGAATCGCCTCTCCGGTGTGATCTCCAGCGACCTTCCGGGTAGTCTGAAATATCTCGATCTTTCGTCGAATGCATTCTCCGGTCGGATTCCGAGGAGTATTGTGAACATGACGAACCTTCAGGTCGTTAATCTCTCTTTCAATAGGTTCGGCGGGGAGATTCCGGCGAGCTTTGGTGAGCTTCAAGAGCTTCAACATCTCTGGCTCGACCATAATGTGTTGGAAGGGACGTTGCCGTCGGCTCTCGCGAATTGTTCTTCGCTTGTTCATTTGAGCGTTGAGGGAAATGCGCTTCAAGGCGTAATCCCGGCCGCCATTGGAGCTCTTCCGAATCTTCAAGTCATTTCCCTCTCGCAGAATGGTCTCTCTGGTTCAGTTCCTTACTCCATGTTTTGCAATGTTTCGTCGCATGCGCCGTCGCTTCGGATCGTTCAACTTGGATTTAATGCGTTCACGGACATTGTCAAACCTCAGACAGCGACGTGTTTTAGTGCTTTACAGGTCCTCGATATCCAACACAATCAGATAAGGGGAGAGTTCCCCTTGTGGTTAACGGGCGTTTCCACTCTGACGGTCTTGGATTTTTCTGTCAATCATTTCTCCGGCCAGATTCCGCCTGGGATTGGGAATCTTTCAGGATTACAAGAGCTCAGAATGTCGAATAATTCGTTTCAGGGCGCGATTCCTTTAGAAATCAAGAACTGCGCCTCGATTTCGGTTATTGATTTTGAAGGGAATCGCTTAACCGGGGAGATTCCGTCGTTTTTGGGTTATATGAGAGGTTTGAAACGGTTGTCTCTCGGTGGAAATAGTTTTTCCGGCACTGTTCCGGCCAGTTTGGGAAATCTTTTGCAGCTGGAAATCTTGAATTTAGAGGACAATGGCTTGAACGGAACCCTTCCGCTGGAGCTAATGGGTCTTGGGAATTTAACAGTAATGGAACTCGGTGGGAATGAACTTTCCGGTGAGGTTCCGACTGGTATTGGCAACCTCAGTCGTCTTGAGATTTTGAATCTCAGTGCTAACAGTCTTTCTGGGACGATTCCGTCTAGTCTTGGCAATCTCTTCAAGCTAACCACTCTGGACTTGAGCAAACAAAATCTTTCCGGGGAGTTGCCATTTGAGCTCTCTGGTTTGCCTAATTTGCAGGTAATTGCTCTACAGGAAAACAAGCTATCTGGGAGTGTTCCTGAAGGATTCAGTAGTTTGGTGGGTTTGCGCTATTTGAATCTAAGTTCAAACGGATTTTCCGGTCAAATCCCTTCAAATTATGGGTTTCTTCGATCGCTTGTATCTCTGTCATTATCAGACAATCACATTTCGGGGTCAATCCCTTCAGAGCTTGGTAACTGCTCTGATCTAGGAAGGTTGGAGGTCCGTTCAAATGCTCTTTCAGGCCAGATTCCGGCGGATCTTTCTCGTTTATCTCATCTACAAGAGCTGGATTTGGGTAGGAATAATTTAACCGGCGAAATCCCAGAAGAGCTCTCAAGTTGTTCGTCTTTAGAATCGCTCCGTCTGAACTCGAATCATCTTTCCGGTCCCATACCGGAGTCATTGTCGGAACTCTTAAACTTAACCACACTGGACCTCTCATCCAACAATTTGAGTGGTGTTATCCCTGCTAATCTTAGCTCCATTACTGGATTGGTGAGCTTAAACGTCTCAAATAATAATCTAGAAGGCGAAATTCCATCCTCTTTAGGCTCAAGATTCAACAGCTCATCTGTGTTTGCTAATAATTCTAATTTATGTGGGAAACCACTGGCTCAGAATTGTAAGGATACAGAGAAAAAGGATAAAATGAAGAGATTGATTCTATTCATTGCAGTGGCTGCTAGTGGAGCTTGCCTCTTGACTTTGTGTTGCTGCTTCTACATTTTCAGCCTGTTGAGATGGCGGAAGAGGCTCAAAGAGAGGGCATCTGGAGAGAAGAAAACAAGCCCAGCAAGGGTTAGCTCTGCAGCAAGTGGTGGCCGTGGAAGCTCAGAAAATGGAGGGCCAAAGCTTGTGATGTTCAACAACAAGATCACTCTAGCGGAAACAATCGAGGCGACAAGACAATTCGATGAAGAGAATGTTCTAAGCAGAACCCGTTATGGGTTGGTTTTCAAAGCTTGTTACAATGATGGCATGGTCCTCTCAATCCGCCGCCTCTCAAATGGTTCATTAGATGAAAACATGTTCAGAAAAGAAGCTGAATCATTGGGAAAAGTTAGGCACCGCAATCTAACTGTTCTTCGTGGCTATTATGCTGGCCCTCCTGATATGCGGCTGTTAGTATACGATTACATGCCTAATGGGAACCTTGCCACTCTCCTTCAGGAAGCATCTCATCAAGATGGTCATGTTCTAAATTGGCCAATGCGGCATCTCATTGCTCTTGGAATCGCCCGTGGCTTAGCCTTTCTCCATTCATCTTCCATTATCCATGGAGATGTGAAGCCACAAAGTGTTCTCTTCGACGCTGATTTCGAAGCTCATTTGTCGGATTTCGGCCTAGACCGACTAACCGTTGCAGCCTCAGCCGAAGCATCCACGTCTACTTTGGTGGGCACATTAGGCTACATTGCCCCTGAAGCAGTGTTGACAGGGGAAGCCACAAAGGAATCTGATGTCTACAGCTTTGGCATTGTGTTGCTCGAGATTCTAACAGGGAAGAAACCAGTAATGTTCACAGAAGATGAAGACATTGTCAAGTGGGTGAAAAAGCAATTGCAAAGAGGCCAAATTACTGAGCTCTTAGAACCAGGTTTACTTGAGCTGGATCCTGAATCATCAGAATGGGAAGAGTTCTTGCTGGGTGTGAAAGTTGGATTGCTTTGCACTGCACCGGATCCTCGTGATCGGCCGACTATGTCTGATATCGTTTTCATGCTCGAAGGTTGCCGTGTCGGACCAGACATCCCTTCCTCGGCAGATCCCACTTCCCAACCGTCGCCCGCATAA 3396 46.82 MKPLLLFFALLCGGFFSSSADTSAQTLLEIQALMSFKLNLHDPLGALTAWDSSTPLAPCDWRGVLCANNRVTELRLPRLQLSGRLTDQLANLRMLRKFSIRSNFFNGTIPSSLSKCALLRSVFLQYNLFSGGLPAEFGNLTNLHVLNVAENRLSGVISSDLPGSLKYLDLSSNAFSGRIPRSIVNMTNLQVVNLSFNRFGGEIPASFGELQELQHLWLDHNVLEGTLPSALANCSSLVHLSVEGNALQGVIPAAIGALPNLQVISLSQNGLSGSVPYSMFCNVSSHAPSLRIVQLGFNAFTDIVKPQTATCFSALQVLDIQHNQIRGEFPLWLTGVSTLTVLDFSVNHFSGQIPPGIGNLSGLQELRMSNNSFQGAIPLEIKNCASISVIDFEGNRLTGEIPSFLGYMRGLKRLSLGGNSFSGTVPASLGNLLQLEILNLEDNGLNGTLPLELMGLGNLTVMELGGNELSGEVPTGIGNLSRLEILNLSANSLSGTIPSSLGNLFKLTTLDLSKQNLSGELPFELSGLPNLQVIALQENKLSGSVPEGFSSLVGLRYLNLSSNGFSGQIPSNYGFLRSLVSLSLSDNHISGSIPSELGNCSDLGRLEVRSNALSGQIPADLSRLSHLQELDLGRNNLTGEIPEELSSCSSLESLRLNSNHLSGPIPESLSELLNLTTLDLSSNNLSGVIPANLSSITGLVSLNVSNNNLEGEIPSSLGSRFNSSSVFANNSNLCGKPLAQNCKDTEKKDKMKRLILFIAVAASGACLLTLCCCFYIFSLLRWRKRLKERASGEKKTSPARVSSAASGGRGSSENGGPKLVMFNNKITLAETIEATRQFDEENVLSRTRYGLVFKACYNDGMVLSIRRLSNGSLDENMFRKEAESLGKVRHRNLTVLRGYYAGPPDMRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLAFLHSSSIIHGDVKPQSVLFDADFEAHLSDFGLDRLTVAASAEASTSTLVGTLGYIAPEAVLTGEATKESDVYSFGIVLLEILTGKKPVMFTEDEDIVKWVKKQLQRGQITELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPRDRPTMSDIVFMLEGCRVGPDIPSSADPTSQPSPA 1131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32703059 32706454 + CcPI632755_04g017770.1 Cco04g1777 177002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1777 1131 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 312 404 - -
Cco04g1777 1131 SUPERFAMILY L domain-like 488 738 - -
Cco04g1777 1131 Gene3D Phosphorylase Kinase; domain 1 811 913 - -
Cco04g1777 1131 Gene3D Transferase(Phosphotransferase) domain 1 914 1117 - -
Cco04g1777 1131 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 914 1117 - -
Cco04g1777 1131 Gene3D Ribonuclease Inhibitor 353 453 IPR032675 -
Cco04g1777 1131 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 477 746 - -
Cco04g1777 1131 MobiDBLite consensus disorder prediction 791 818 - -
Cco04g1777 1131 Pfam Leucine Rich Repeat 339 360 IPR001611 GO:0005515(InterPro)
Cco04g1777 1131 Pfam Leucine Rich Repeat 164 186 IPR001611 GO:0005515(InterPro)
Cco04g1777 1131 Pfam Leucine Rich Repeat 578 600 IPR001611 GO:0005515(InterPro)
Cco04g1777 1131 Pfam Leucine Rich Repeat 674 695 IPR001611 GO:0005515(InterPro)
Cco04g1777 1131 Pfam Leucine Rich Repeat 363 384 IPR001611 GO:0005515(InterPro)
Cco04g1777 1131 Pfam Leucine Rich Repeat 699 718 IPR001611 GO:0005515(InterPro)
Cco04g1777 1131 Pfam Leucine Rich Repeat 411 432 IPR001611 GO:0005515(InterPro)
Cco04g1777 1131 Pfam Leucine Rich Repeat 188 210 IPR001611 GO:0005515(InterPro)
Cco04g1777 1131 Pfam Leucine Rich Repeat 315 334 IPR001611 GO:0005515(InterPro)
Cco04g1777 1131 Pfam Leucine Rich Repeat 626 648 IPR001611 GO:0005515(InterPro)
Cco04g1777 1131 Pfam Leucine Rich Repeat 650 672 IPR001611 GO:0005515(InterPro)
Cco04g1777 1131 Pfam Leucine Rich Repeat 482 504 IPR001611 GO:0005515(InterPro)
Cco04g1777 1131 SUPERFAMILY Protein kinase-like (PK-like) 817 1119 IPR011009 -
Cco04g1777 1131 FunFam Leucine-rich repeat receptor protein kinase EMS1 203 307 - -
Cco04g1777 1131 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 27 185 - -
Cco04g1777 1131 ProSiteProfiles Protein kinase domain profile. 838 1118 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g1777 1131 Pfam Leucine rich repeat N-terminal domain 29 66 IPR013210 -
Cco04g1777 1131 FunFam Putative LRR receptor-like serine/threonine-protein kinase 802 913 - -
Cco04g1777 1131 Gene3D Ribonuclease Inhibitor 163 250 IPR032675 -
Cco04g1777 1131 Gene3D Ribonuclease Inhibitor 251 352 IPR032675 -
Cco04g1777 1131 Pfam Protein kinase domain 848 1106 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g1777 1131 Pfam Leucine rich repeat 212 271 IPR001611 GO:0005515(InterPro)
Cco04g1777 1131 Pfam Leucine rich repeat 506 564 IPR001611 GO:0005515(InterPro)
Cco04g1777 1131 FunFam Piriformospora indica-insensitive protein 2 353 451 - -
Cco04g1777 1131 SMART LRR_typ_2 140 163 IPR003591 -
Cco04g1777 1131 SMART LRR_typ_2 480 504 IPR003591 -
Cco04g1777 1131 SMART LRR_typ_2 360 384 IPR003591 -
Cco04g1777 1131 SMART LRR_typ_2 696 720 IPR003591 -
Cco04g1777 1131 SMART LRR_typ_2 408 431 IPR003591 -
Cco04g1777 1131 SMART LRR_typ_2 210 233 IPR003591 -
Cco04g1777 1131 SMART LRR_typ_2 528 551 IPR003591 -
Cco04g1777 1131 SMART LRR_typ_2 624 648 IPR003591 -
Cco04g1777 1131 SMART LRR_typ_2 258 282 IPR003591 -
Cco04g1777 1131 SMART LRR_typ_2 576 600 IPR003591 -
Cco04g1777 1131 SMART LRR_typ_2 672 695 IPR003591 -
Cco04g1777 1131 SMART LRR_typ_2 186 209 IPR003591 -
Cco04g1777 1131 Gene3D Ribonuclease Inhibitor 454 751 IPR032675 -
Cco04g1777 1131 SUPERFAMILY RNI-like 310 567 - -
Cco04g1777 1131 Gene3D Ribonuclease Inhibitor 28 162 IPR032675 -
Cco04g1777 1131 SUPERFAMILY L domain-like 28 303 - -
Cco04g1777 1131 MobiDBLite consensus disorder prediction 796 810 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1777 Cco-Chr4:32703059 Cco11g1766 Cco-Chr11:30386896 1.00E-49 dispersed
Cco02g1231 Cco-Chr2:23265474 Cco04g1777 Cco-Chr4:32703059 8.00E-50 wgd
Cco04g1777 Cco-Chr4:32703059 Cco07g0981 Cco-Chr7:22619000 5.70E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86770 PF00069 Pkinase 4.50E-35 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1777 - - - 0.0