Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1780 ATGTCGTCAACCGGAGAGGCTGAAGTTAAAGTTCCGGCGGAGGATGTTCCTCCTGTGGAGGTTCCGGCTGCAGAGGAGCCGAAGGAGGCTGAGAAGCCGCCGGTGAAGGAGAAGAAACCTAGGGCTCCGAGGGAGAAGAAGCCTAGGCAGTCTAAAGTTGCTTCACATCCACCGTACTTTCAGATGATTAATGAAGCAATCTCGTCGCTCAACGAGAAGAATGGATCGAGTCCGTACGCTATAGCCAAATACATGGAGGAGAAACACAAGGCGGTTCTTCCTGCGAATTTCAGGAAAATCTTGGCTCTTCAATTGAAGAATTCCACCGCTAAAGGAAAATTAACGAAGATCAAGGCATCGTATAAGCTGTCCGAAACGGGGAAGAAAAAGGACAAGAACGTAACGAAGGTCGCAAAAGCGAACGCAGAGAAGAAAACTAAACAAGCAAGAACGACGAGAACTACCGGAAGGAAGAGGAAGGCGGTGAAGAAGGACGAGGCGGCGAAGGCGGCGAAGAAGGTTGTTGCAAAGAAACCGAAAAGATCAACTCCGGCGAAGCCAAAACAGCCGAAATCAATTAAGGCCCCTGCTGCGAAGAGGGCTAAGAAAGCGGTTGCGGGAATGTAG 627 50.08 MSSTGEAEVKVPAEDVPPVEVPAAEEPKEAEKPPVKEKKPRAPREKKPRQSKVASHPPYFQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKASYKLSETGKKKDKNVTKVAKANAEKKTKQARTTRTTGRKRKAVKKDEAAKAAKKVVAKKPKRSTPAKPKQPKSIKAPAAKRAKKAVAGM 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32735905 32736614 - CcPI632755_04g017800.1 Cco04g1780 177005

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1780 208 Gene3D - 51 135 IPR036388 -
Cco04g1780 208 MobiDBLite consensus disorder prediction 128 208 - -
Cco04g1780 208 MobiDBLite consensus disorder prediction 21 41 - -
Cco04g1780 208 CDD H15 54 132 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cco04g1780 208 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 55 125 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cco04g1780 208 PRINTS Histone H5 signature 179 196 IPR005819 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)|GO:0030527(InterPro)
Cco04g1780 208 PRINTS Histone H5 signature 147 161 IPR005819 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)|GO:0030527(InterPro)
Cco04g1780 208 PRINTS Histone H5 signature 42 63 IPR005819 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)|GO:0030527(InterPro)
Cco04g1780 208 PRINTS Histone H5 signature 69 86 IPR005819 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)|GO:0030527(InterPro)
Cco04g1780 208 MobiDBLite consensus disorder prediction 174 198 - -
Cco04g1780 208 SMART h15plus2 53 120 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cco04g1780 208 SUPERFAMILY Winged helix DNA-binding domain 54 135 IPR036390 -
Cco04g1780 208 MobiDBLite consensus disorder prediction 1 59 - -
Cco04g1780 208 Pfam linker histone H1 and H5 family 56 122 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cco04g1780 208 MobiDBLite consensus disorder prediction 128 150 - -
Cco04g1780 208 PANTHER HISTONE H1 28 199 - GO:0003690(PANTHER)|GO:0005634(PANTHER)|GO:0030261(PANTHER)|GO:0031492(PANTHER)|GO:0045910(PANTHER)
Cco04g1780 208 MobiDBLite consensus disorder prediction 159 173 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1780 K11275 - - csv:101205007 215.698
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1780 Cco-Chr4:32735905 Cco07g0070 Cco-Chr7:680363 1.70E-14 dispersed
Cco04g1780 Cco-Chr4:32735905 Cco02g1801 Cco-Chr2:30847146 3.10E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1091 Blo04g00891 . . . . . . . . . Cma03g00698 . Car03g00642 . Sed08g1603 . Cpe10g00652 Bhi03g00883 Tan03g2056 Cmetu04g0515 . Hepe04g1578 . . Cla01g01965 Cam01g2057 Cec04g1715 Cco04g1780 Clacu01g2078 Cmu01g1955 Cre04g1629 Cone8ag0839 Cone12ag0726 . . Lsi01g00617 . . Cme08g00912 . . . . . . Bma03g00967 . . Cmo03g00725 . . . . . . . . . . . . . . . . . . . . . . Csa06g03310 Chy02g00587 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012514 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 29