Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g1798 | ATGATCAAGATTGGTTGGGGAGCGGGGCATCCTCGTGGTCGTGGCTCGTGGAGTGCACGATCTGGTGTTGGATTTTGTGGTATCGTTTCATATTATAGTGGAGATTTCCCTCTCTCTTTTGGAAGGGATCAGAGGAATTCAACTCTGAGATTTACTCGCCGTTTTGCTCTGTTTAAATACCCTTTTGGGATCCTTATGGAACAGTGGAAGACGGGAGATTTCACTCAATCTATCGTACCAGCTGATTTAGTTCCTTCTTCGTCTCTTCAACCTCAGCCTGTCGCTGTGTCGTCCACTCGCCACCATAACAACCAGCTAACTGAATCCAGGTTAAGAGCAGATGCAGAAGTAAAAGATCCAATAGCAGTGAGAAAAATTCAAAAGGCAGATCGTGAAAAATTGAGGAGAGACAGACTGAATGAACACTTTCTTGAGCTAGGAAACACATTAGATCCAGATAGGCCTAAAAATGACAAGGCTACCATCCTTACAGACACTATCCAAATGCTGAAGGATTTAACTGCCGAAGTCAATAGATTAAAGGCTGACTATGAAACTCTTTCTGAAGAATCACGTGAGCTAACTCAGGAAAAGAATGAGCTTAGAGAAGAGAAGGCTTCATTAAAGTCAGATATTGAAAATCTAAATGCTCAGTATCAGCAAAGATTGAGGGTCGTGTTTCCCTGGGCCACAATGGATCCTTCAGTTGTCATGGGGCCCCCATATTCCTACCCCGTTCCCGTTCCCATTCCCCCTGGACCGATTCCCATGCATCCGTCATTGCAGCCCTTCACCTTCTTTGGAAATCAGAATCCTGGTGCCATTCCCAACCCCTGTTCCACATTTGTCCCATATACTGCTGCTGCCAATCATCCGATCGATCAGCCCTCTGCCCATTATGCTTCCAATTCACATATATCTAGCAAACAAGATTCCAGAAGTAAATCATCAGATCAGCACAGGCGTAGTAATGCTGAAAGATGCGACGAGTCCAACGATGTAGCAACGGACCTTGAACTTAAGATGCCTGGATCTTCTACACAGCAGGATGCATCCTCTGGAAGTAAGAAAGGTAAGCAGTCACAAAGTAAAGAAAAAAGTGTTACAGATTGCAGTTCTTCGAGTAGGTTTTCTTCATCCCAAGTTCTTCAAGATAGCTCCTCTAACAGTGTTGGCGACATCCCGAAACAGAACAACTGA | 1200 | 44.58 | MIKIGWGAGHPRGRGSWSARSGVGFCGIVSYYSGDFPLSFGRDQRNSTLRFTRRFALFKYPFGILMEQWKTGDFTQSIVPADLVPSSSLQPQPVAVSSTRHHNNQLTESRLRADAEVKDPIAVRKIQKADREKLRRDRLNEHFLELGNTLDPDRPKNDKATILTDTIQMLKDLTAEVNRLKADYETLSEESRELTQEKNELREEKASLKSDIENLNAQYQQRLRVVFPWATMDPSVVMGPPYSYPVPVPIPPGPIPMHPSLQPFTFFGNQNPGAIPNPCSTFVPYTAAANHPIDQPSAHYASNSHISSKQDSRSKSSDQHRRSNAERCDESNDVATDLELKMPGSSTQQDASSGSKKGKQSQSKEKSVTDCSSSSRFSSSQVLQDSSSNSVGDIPKQNN | 399 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 32875983 | 32878737 | - | CcPI632755_04g017980.1 | Cco04g1798 | 177023 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g1798 | 399 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 123 | 173 | IPR011598 | GO:0046983(InterPro) | |
Cco04g1798 | 399 | MobiDBLite | consensus disorder prediction | 311 | 336 | - | - | |
Cco04g1798 | 399 | Pfam | Helix-loop-helix DNA-binding domain | 124 | 174 | IPR011598 | GO:0046983(InterPro) | |
Cco04g1798 | 399 | Gene3D | - | 122 | 225 | IPR036638 | GO:0046983(InterPro) | |
Cco04g1798 | 399 | SMART | finulus | 129 | 179 | IPR011598 | GO:0046983(InterPro) | |
Cco04g1798 | 399 | CDD | bHLH_AtILR3_like | 128 | 202 | - | - | |
Cco04g1798 | 399 | MobiDBLite | consensus disorder prediction | 341 | 358 | - | - | |
Cco04g1798 | 399 | MobiDBLite | consensus disorder prediction | 296 | 310 | - | - | |
Cco04g1798 | 399 | Coils | Coil | 163 | 218 | - | - | |
Cco04g1798 | 399 | MobiDBLite | consensus disorder prediction | 365 | 399 | - | - | |
Cco04g1798 | 399 | PANTHER | TRANSCRIPTION FACTOR BHLH121 | 87 | 397 | IPR044579 | GO:0003700(InterPro)|GO:0006879(InterPro) | |
Cco04g1798 | 399 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 124 | 193 | IPR036638 | GO:0046983(InterPro) | |
Cco04g1798 | 399 | MobiDBLite | consensus disorder prediction | 294 | 399 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g1798 | Cco-Chr4:32875983 | Cco05g1689 | Cco-Chr5:24706954 | 1.10E-09 | dispersed | |
Cco06g1830 | Cco-Chr6:28600497 | Cco04g1798 | Cco-Chr4:32875983 | 2.60E-08 | transposed | |
Cco02g1250 | Cco-Chr2:23721953 | Cco04g1798 | Cco-Chr4:32875983 | 1.60E-54 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59121 | PF00010 | HLH | 8.30E-09 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g1798 | - | - | - | 0.0 |