Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1798 ATGATCAAGATTGGTTGGGGAGCGGGGCATCCTCGTGGTCGTGGCTCGTGGAGTGCACGATCTGGTGTTGGATTTTGTGGTATCGTTTCATATTATAGTGGAGATTTCCCTCTCTCTTTTGGAAGGGATCAGAGGAATTCAACTCTGAGATTTACTCGCCGTTTTGCTCTGTTTAAATACCCTTTTGGGATCCTTATGGAACAGTGGAAGACGGGAGATTTCACTCAATCTATCGTACCAGCTGATTTAGTTCCTTCTTCGTCTCTTCAACCTCAGCCTGTCGCTGTGTCGTCCACTCGCCACCATAACAACCAGCTAACTGAATCCAGGTTAAGAGCAGATGCAGAAGTAAAAGATCCAATAGCAGTGAGAAAAATTCAAAAGGCAGATCGTGAAAAATTGAGGAGAGACAGACTGAATGAACACTTTCTTGAGCTAGGAAACACATTAGATCCAGATAGGCCTAAAAATGACAAGGCTACCATCCTTACAGACACTATCCAAATGCTGAAGGATTTAACTGCCGAAGTCAATAGATTAAAGGCTGACTATGAAACTCTTTCTGAAGAATCACGTGAGCTAACTCAGGAAAAGAATGAGCTTAGAGAAGAGAAGGCTTCATTAAAGTCAGATATTGAAAATCTAAATGCTCAGTATCAGCAAAGATTGAGGGTCGTGTTTCCCTGGGCCACAATGGATCCTTCAGTTGTCATGGGGCCCCCATATTCCTACCCCGTTCCCGTTCCCATTCCCCCTGGACCGATTCCCATGCATCCGTCATTGCAGCCCTTCACCTTCTTTGGAAATCAGAATCCTGGTGCCATTCCCAACCCCTGTTCCACATTTGTCCCATATACTGCTGCTGCCAATCATCCGATCGATCAGCCCTCTGCCCATTATGCTTCCAATTCACATATATCTAGCAAACAAGATTCCAGAAGTAAATCATCAGATCAGCACAGGCGTAGTAATGCTGAAAGATGCGACGAGTCCAACGATGTAGCAACGGACCTTGAACTTAAGATGCCTGGATCTTCTACACAGCAGGATGCATCCTCTGGAAGTAAGAAAGGTAAGCAGTCACAAAGTAAAGAAAAAAGTGTTACAGATTGCAGTTCTTCGAGTAGGTTTTCTTCATCCCAAGTTCTTCAAGATAGCTCCTCTAACAGTGTTGGCGACATCCCGAAACAGAACAACTGA 1200 44.58 MIKIGWGAGHPRGRGSWSARSGVGFCGIVSYYSGDFPLSFGRDQRNSTLRFTRRFALFKYPFGILMEQWKTGDFTQSIVPADLVPSSSLQPQPVAVSSTRHHNNQLTESRLRADAEVKDPIAVRKIQKADREKLRRDRLNEHFLELGNTLDPDRPKNDKATILTDTIQMLKDLTAEVNRLKADYETLSEESRELTQEKNELREEKASLKSDIENLNAQYQQRLRVVFPWATMDPSVVMGPPYSYPVPVPIPPGPIPMHPSLQPFTFFGNQNPGAIPNPCSTFVPYTAAANHPIDQPSAHYASNSHISSKQDSRSKSSDQHRRSNAERCDESNDVATDLELKMPGSSTQQDASSGSKKGKQSQSKEKSVTDCSSSSRFSSSQVLQDSSSNSVGDIPKQNN 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32875983 32878737 - CcPI632755_04g017980.1 Cco04g1798 177023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1798 399 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 123 173 IPR011598 GO:0046983(InterPro)
Cco04g1798 399 MobiDBLite consensus disorder prediction 311 336 - -
Cco04g1798 399 Pfam Helix-loop-helix DNA-binding domain 124 174 IPR011598 GO:0046983(InterPro)
Cco04g1798 399 Gene3D - 122 225 IPR036638 GO:0046983(InterPro)
Cco04g1798 399 SMART finulus 129 179 IPR011598 GO:0046983(InterPro)
Cco04g1798 399 CDD bHLH_AtILR3_like 128 202 - -
Cco04g1798 399 MobiDBLite consensus disorder prediction 341 358 - -
Cco04g1798 399 MobiDBLite consensus disorder prediction 296 310 - -
Cco04g1798 399 Coils Coil 163 218 - -
Cco04g1798 399 MobiDBLite consensus disorder prediction 365 399 - -
Cco04g1798 399 PANTHER TRANSCRIPTION FACTOR BHLH121 87 397 IPR044579 GO:0003700(InterPro)|GO:0006879(InterPro)
Cco04g1798 399 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 193 IPR036638 GO:0046983(InterPro)
Cco04g1798 399 MobiDBLite consensus disorder prediction 294 399 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1798 Cco-Chr4:32875983 Cco05g1689 Cco-Chr5:24706954 1.10E-09 dispersed
Cco06g1830 Cco-Chr6:28600497 Cco04g1798 Cco-Chr4:32875983 2.60E-08 transposed
Cco02g1250 Cco-Chr2:23721953 Cco04g1798 Cco-Chr4:32875983 1.60E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59121 PF00010 HLH 8.30E-09 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1798 - - - 0.0