Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1802 ATGGCGGAGATCAAGCTAATCTTGGCTCGGCCGATTCAATTGGCCGACCAAGTCACCAAGGCAGCCGATGAGGCCACCAGCTGCAAGCAGGAGTGCGCCGACCTCAAGAGCAAGACGGAAAAGCTCGCTACTCTTCTCCGTCAGGCGGCTCGAGCGAGTTCCGATCTCTACGAGCGACCGGCCACTCGGATCATCAACGAAACTGCTCAGTCTTTGGATAAAGCTCTGTCGCTGGTGCTCAAATGCAGTGGCAATGGCCTTATGAAGCGTGTTTTTACAATCATCCCTGCGGCCGCCTTCCGAAAATCCTGCTCCCAACTCGAGAATTCCATTGGTGATGTCTCGTGGTTGCTTCGAGTTTCCGCCTCCGCTGAGGATCGTGGCGACGAGTATTTGGGTCTTCCCCCAATTGCCGCTAACGAACCCATTCTTGGTCTCATCTGGGAACAGATTGCTATTCTCTCAACTGGGTCGCCGGAAGATCGAGCTGACGCGGCGGCGTCGCTGGTTTCTTTGGCGAAAGACAGCGAGAGGTATGGGAAACGGATCATCGAAGAAGGCGGCGTTGGAGCGCTGCTGAAATTGCTGAAAGAAGGTAAGGTTGAAGGTCAAGAACACGCTGCAACTGCAATTGGGCTTTTAGGGCGTGACCCTGAGAATGTTGAGGCCATGATTCAGGCTGGTGTCTGCCAGGTGTTTGCGAAAATTCTCAAAGAAGGTCCGATGAAAGTTCAGGCTGTGGTTGCTTGGGCTATATCAGAACTCGTTTCTAGTTACCCAAAATGCCAAGATCTCTTTGAACAACACTATATTATCCGCTCCCTTGTTAGCCATCTTGCGTTTGAGACTGTTCAAGAACATAGCAAATACAATATCACTGCCAATAAAGCCACCTCGATCCATGCTCTGGTAATGGCTAGCAACCCCAAAACGAATAATGTGTATAAAGCTGTGGATGATGATGATCGACAGCTCCATAGTCGGATTCTTCATCCGATGGGAAATCGAACCCCAAATCAGATGCACGCTGTGGTTACCAACACTATGAACGCGCTCTCTGGTGGGTCGTTTCCGGCTACAACAGCAACTCCTCAGGCAGGCCATAGCGAAGGCCACAGCCTTAGCAGCAATGGAAAGCATCTTCTTCCACATCCATCCCCTTACCTTCACCATGCTCATTCCGGCCCCAGCACGAAGGGCAGGGAACTCGAGGACCCAGCGACAAAAACCAAGATGAAAGCCATGGCAGCTAGAGCCCTTTGGCAGCTTGCCAAAGGGAATTTGACAATCTGCCGTAGTATTACAGAATCAAGAGCTTTGTTGTGTTTTGCTGTTCTACTCGAGAAGGGGGAACAGAATGTGCGGCATAACTCTGCAATGGCATTGATGGAGATCACTGCCATGGCGGAGCACGATCCTGACTTGAGAAGATCTGCCTTCAAGCCGACTTCGCCTGCTTGCAGAGCTGTTGTGGAACAGTTGCTGAAGATAATTGAAAAAGAAGATGCTGATCTCCTCATCCCTTGTATCAAATCCATTGGACATTTAGCGAGGACGTTCCGAGCAACCGAGAAGAGAATGATCATTCCATTGGTGCAGCTTCTCGACGAAAGAGAGACCGAGGTCTCGATGGAGGCCTGCATTGCTCTCACCAAATTTGCCTGCACAGAAAACTTCCTCCACATCAACCACTGCGAGGAAATTCTAGCTGCAGGAGGGGCAAAACACTTAGTCCAGCTAGTGTACTTTGGGGAACAAAGTGTTAAACTTGAAGCTTTAACTCTGTTGTGTTACATTGCCCTGCATTTGCCAGATAGAGAGGAGCTTGCTCGGGCCGAGACGCTTCCCGTGATCGAATGGGCGTCAAAACAATCCCATTTGACGCAGGATGAAAAACGTGAAAGACTCTTACATGAGGCTGCAAATAAGCTAGAGCTGTTTCAATCTAGAGGTCCAAGAGGATACCATTGA 1971 50.13 MAEIKLILARPIQLADQVTKAADEATSCKQECADLKSKTEKLATLLRQAARASSDLYERPATRIINETAQSLDKALSLVLKCSGNGLMKRVFTIIPAAAFRKSCSQLENSIGDVSWLLRVSASAEDRGDEYLGLPPIAANEPILGLIWEQIAILSTGSPEDRADAAASLVSLAKDSERYGKRIIEEGGVGALLKLLKEGKVEGQEHAATAIGLLGRDPENVEAMIQAGVCQVFAKILKEGPMKVQAVVAWAISELVSSYPKCQDLFEQHYIIRSLVSHLAFETVQEHSKYNITANKATSIHALVMASNPKTNNVYKAVDDDDRQLHSRILHPMGNRTPNQMHAVVTNTMNALSGGSFPATTATPQAGHSEGHSLSSNGKHLLPHPSPYLHHAHSGPSTKGRELEDPATKTKMKAMAARALWQLAKGNLTICRSITESRALLCFAVLLEKGEQNVRHNSAMALMEITAMAEHDPDLRRSAFKPTSPACRAVVEQLLKIIEKEDADLLIPCIKSIGHLARTFRATEKRMIIPLVQLLDERETEVSMEACIALTKFACTENFLHINHCEEILAAGGAKHLVQLVYFGEQSVKLEALTLLCYIALHLPDREELARAETLPVIEWASKQSHLTQDEKRERLLHEAANKLELFQSRGPRGYH 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32911484 32913454 + CcPI632755_04g018020.1 Cco04g1802 177027

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1802 656 SMART arm_5 561 601 IPR000225 GO:0005515(InterPro)
Cco04g1802 656 SMART arm_5 175 216 IPR000225 GO:0005515(InterPro)
Cco04g1802 656 SMART arm_5 427 467 IPR000225 GO:0005515(InterPro)
Cco04g1802 656 SMART arm_5 217 257 IPR000225 GO:0005515(InterPro)
Cco04g1802 656 MobiDBLite consensus disorder prediction 355 407 - -
Cco04g1802 656 MobiDBLite consensus disorder prediction 355 380 - -
Cco04g1802 656 PANTHER ARMADILLO REPEAT ONLY 4 3 653 - -
Cco04g1802 656 Gene3D - 145 325 IPR011989 -
Cco04g1802 656 SUPERFAMILY ARM repeat 151 628 IPR016024 -
Cco04g1802 656 Gene3D - 397 642 IPR011989 -
Cco04g1802 656 Coils Coil 35 55 - -
Cco04g1802 656 Pfam Armadillo/beta-catenin-like repeat 217 256 IPR000225 GO:0005515(InterPro)
Cco04g1802 656 Pfam Armadillo/beta-catenin-like repeat 183 213 IPR000225 GO:0005515(InterPro)
Cco04g1802 656 Gene3D - 3 120 IPR036537 GO:0007166(InterPro)
Cco04g1802 656 FunFam Armadillo repeat only 2 149 317 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1802 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1802 Cco-Chr4:32911484 Cco08g1945 Cco-Chr8:30316258 9.80E-93 dispersed
Cco02g1275 Cco-Chr2:24290491 Cco04g1802 Cco-Chr4:32911484 1.90E-237 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1117 . . . . . . . Bma15g00941 . . Cma03g00681 Cma07g00424 Car03g00628 Car07g00371 Sed14g1200 Cpe19g00863 Cpe10g00667 Bhi03g00862 Tan03g2088 Cmetu04g1901 . Hepe04g1596 . . Cla01g01984 Cam01g2077 Cec04g1736 Cco04g1802 Clacu01g2099 Cmu01g1974 Cre04g1650 . . Cone6ag1684 Cone9ag1606 Lsi01g00597 . . Cme08g00933 Blo05g00710 Blo06g00299 . . Bpe10g00158 Bpe06g00129 . . Sed01g0209 Cmo03g00706 Cmo07g00421 . . . . . . Bhi10g01872 Tan05g1164 Cmetu11g2261 . Hepe08g0276 . . . . . . . . . . Csa06g03331 Chy02g00569 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006048 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 39