Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1803 ATGGAGATAGGGAGCAGTTGGAAATGGAGATGGAGAATGATTTTCATCTTCTCGCAGTTGATAATCACCACAATTTGTCAGCCACCCTTTGTCCAGCACAAGTGTTCCGACGACGTAGGCAACTATACAAACAGCAGCCCTTTCAAGAAAAATCTTGACGCCGTTCTTAACTCTATCTCCACCAATTCTCAGACCGACAAAGGTTTCTATGCGACCGCCGGCGAAGAACCAAACAGAGCCACCGCGCTATGGCGCTTTGTCGTGGTACTAAGGAGCTTATTGGAAGAATTGCGAGTGCAGCTGGCTGAAACAGGGACTCCAACTCTAAAGTCTGGCAACGGAGTGAAAGAGCTTCCCAACAATGGAGTAAACAATAATTCCGCCAGAAGAATTGTCATAATTGTTGTTTCTTCTACGCTCTTTTTCCATACTCTTCTCCCTTATCCTCCTTATCTTTTTGAGAAAGAGGAAGCGAAACCAAAAGCCACAACCACAAATGAAATCCTGAGTATTGAGATGTTGCAATTTGATTTCGAGACTATTAAGTTAGGAACAACTGAATTCTCAAGTGAAAATAAGATTGGAGAAGGTGGATTTGGAGCCGTTTACAAGGGTAAACTTCCAAATGGACGAGAAATAGCCGTGAAAAGACTTGCAAAAGATTCACAACAGGGAGATGTAGAATTTAGAAACGAAGTATTGTTGGTAGCCAAACTTCATCATAGAAATTTGGTTAGGCTACTTGGATTTTGCTTGCAAAAGAATGAAAAGCTTCTCATATATGAGTTTGTACAGAATGCAAGCCTTGACCACTTCATATTTGATTTTCATAATCGGATCCTTTTAGATTGGGAAACACGATACAAAATTATAAATGGTATTGCACGAAGACTTCTTTATCTTCATGAAGAATCTCGTCTCTTAATCATCCATCGTGATCTCAAATCTAACAATATTTTGTTGGATGAGAAGATGAATCCAAAAATTACGGATTTTGGTACAGCAAGAATGTTTGAAGTAGATGAAACTCATGGCAATACAAATAGAATTGTGGGAACTTATGGATATATGGCTCCAGAGTATGCATTGGATGGACAATTTTCAATAAAATCGGATGCATGGAAAAATTGGGGGGCAGGAACACCAATGAATGTGATAGATCCAAAACTAAAAGATGGTTCTACTTTTGAAATGAGTAATATTGAAGAATCTAACACTGGCAAAACCAAATCCTTGGTTGTGAATGGCTCAATCTTTTCATTTCAAAAGCACACCTCTTGA 1281 39.11 MEIGSSWKWRWRMIFIFSQLIITTICQPPFVQHKCSDDVGNYTNSSPFKKNLDAVLNSISTNSQTDKGFYATAGEEPNRATALWRFVVVLRSLLEELRVQLAETGTPTLKSGNGVKELPNNGVNNNSARRIVIIVVSSTLFFHTLLPYPPYLFEKEEAKPKATTTNEILSIEMLQFDFETIKLGTTEFSSENKIGEGGFGAVYKGKLPNGREIAVKRLAKDSQQGDVEFRNEVLLVAKLHHRNLVRLLGFCLQKNEKLLIYEFVQNASLDHFIFDFHNRILLDWETRYKIINGIARRLLYLHEESRLLIIHRDLKSNNILLDEKMNPKITDFGTARMFEVDETHGNTNRIVGTYGYMAPEYALDGQFSIKSDAWKNWGAGTPMNVIDPKLKDGSTFEMSNIEESNTGKTKSLVVNGSIFSFQKHTS 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32919644 32923296 - CcPI632755_04g018030.1 Cco04g1803 177028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1803 426 SUPERFAMILY Protein kinase-like (PK-like) 176 374 IPR011009 -
Cco04g1803 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 309 321 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g1803 426 FunFam Cysteine-rich receptor-like protein kinase 10 153 263 - -
Cco04g1803 426 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 91 373 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cco04g1803 426 ProSiteProfiles Protein kinase domain profile. 188 426 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g1803 426 Gene3D Phosphorylase Kinase; domain 1 152 263 - -
Cco04g1803 426 SMART serkin_6 188 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g1803 426 Gene3D Transferase(Phosphotransferase) domain 1 264 376 - -
Cco04g1803 426 Pfam Protein kinase domain 189 374 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g1803 426 FunFam Os07g0541700 protein 264 353 - -
Cco04g1803 426 ProSitePatterns Protein kinases ATP-binding region signature. 194 216 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1803 Cco-Chr4:32919644 Cco04g2006 Cco-Chr4:34204500 3.60E-96 dispersed
Cco04g1803 Cco-Chr4:32919644 Cco04g2009 Cco-Chr4:34225039 4.40E-94 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86772 PF00069 Pkinase 2.10E-40 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1803 - - - 0.0